Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21493

Experiment: LB no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21491 and SM_b21492 are separated by 242 nucleotidesSM_b21492 and SM_b21493 are separated by 33 nucleotidesSM_b21493 and SM_b21494 are separated by 126 nucleotides SM_b21491: SM_b21491 - hypothetical protein, at 1,413,437 to 1,413,967 _b21491 SM_b21492: SM_b21492 - hypothetical protein, at 1,414,210 to 1,414,872 _b21492 SM_b21493: SM_b21493 - AsnC family transcriptional regulator, at 1,414,906 to 1,415,367 _b21493 SM_b21494: SM_b21494 - ornithine cyclodeaminase, at 1,415,494 to 1,416,561 _b21494 Position (kb) 1414 1415 1416Strain fitness (log2 ratio) -1 0 1at 1414.524 kb on + strand, within SM_b21492at 1414.526 kb on + strand, within SM_b21492at 1414.587 kb on - strand, within SM_b21492at 1414.676 kb on + strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.710 kb on - strand, within SM_b21492at 1414.848 kb on + strandat 1414.889 kb on + strandat 1415.009 kb on - strand, within SM_b21493at 1415.009 kb on - strand, within SM_b21493at 1415.009 kb on - strand, within SM_b21493at 1415.010 kb on + strand, within SM_b21493at 1415.150 kb on + strand, within SM_b21493at 1415.719 kb on + strand, within SM_b21494at 1415.720 kb on - strand, within SM_b21494at 1415.731 kb on + strand, within SM_b21494at 1415.731 kb on + strand, within SM_b21494at 1415.732 kb on - strand, within SM_b21494at 1415.732 kb on - strand, within SM_b21494at 1415.829 kb on + strand, within SM_b21494at 1416.002 kb on - strand, within SM_b21494at 1416.124 kb on - strand, within SM_b21494at 1416.183 kb on + strand, within SM_b21494at 1416.184 kb on - strand, within SM_b21494at 1416.184 kb on - strand, within SM_b21494at 1416.224 kb on + strand, within SM_b21494

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
remove
1,414,524 + SM_b21492 0.47 +0.8
1,414,526 + SM_b21492 0.48 -0.6
1,414,587 - SM_b21492 0.57 +0.2
1,414,676 + SM_b21492 0.70 +0.2
1,414,677 - SM_b21492 0.70 -0.0
1,414,677 - SM_b21492 0.70 -0.6
1,414,677 - SM_b21492 0.70 -0.3
1,414,677 - SM_b21492 0.70 -0.3
1,414,710 - SM_b21492 0.75 +1.1
1,414,848 + +1.0
1,414,889 + +0.6
1,415,009 - SM_b21493 0.22 -0.6
1,415,009 - SM_b21493 0.22 +0.1
1,415,009 - SM_b21493 0.22 -1.0
1,415,010 + SM_b21493 0.23 -0.6
1,415,150 + SM_b21493 0.53 -0.9
1,415,719 + SM_b21494 0.21 -0.8
1,415,720 - SM_b21494 0.21 -0.2
1,415,731 + SM_b21494 0.22 +0.0
1,415,731 + SM_b21494 0.22 +0.3
1,415,732 - SM_b21494 0.22 -1.6
1,415,732 - SM_b21494 0.22 +0.1
1,415,829 + SM_b21494 0.31 +0.8
1,416,002 - SM_b21494 0.48 +0.7
1,416,124 - SM_b21494 0.59 -0.5
1,416,183 + SM_b21494 0.65 -0.1
1,416,184 - SM_b21494 0.65 +0.3
1,416,184 - SM_b21494 0.65 -1.1
1,416,224 + SM_b21494 0.68 -0.3

Or see this region's nucleotide sequence