Strain Fitness in Sinorhizobium meliloti 1021 around SMa1910

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1910 and SMa1913 are separated by 342 nucleotides SMa1910: SMa1910 - hypothetical protein, at 1,087,264 to 1,087,539 SMa1910 SMa1913: SMa1913 - Na+/H+ antiporter, at 1,087,882 to 1,089,270 SMa1913 Position (kb) 1087 1088Strain fitness (log2 ratio) -2 -1 0 1 2at 1086.678 kb on + strandat 1086.685 kb on + strandat 1086.685 kb on + strandat 1086.685 kb on + strandat 1086.686 kb on - strandat 1086.687 kb on + strandat 1086.688 kb on - strandat 1086.688 kb on - strandat 1086.688 kb on - strandat 1086.688 kb on - strandat 1086.989 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.011 kb on + strandat 1087.011 kb on + strandat 1087.012 kb on - strandat 1087.012 kb on - strandat 1087.013 kb on + strandat 1087.013 kb on + strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.064 kb on + strandat 1087.065 kb on - strandat 1087.065 kb on - strandat 1087.078 kb on - strandat 1087.136 kb on - strandat 1087.136 kb on - strandat 1087.139 kb on + strandat 1087.175 kb on - strandat 1087.185 kb on + strandat 1087.214 kb on + strandat 1087.275 kb on - strandat 1087.341 kb on + strand, within SMa1910at 1087.465 kb on + strand, within SMa1910at 1087.466 kb on - strand, within SMa1910at 1087.487 kb on - strand, within SMa1910at 1087.511 kb on - strand, within SMa1910at 1087.511 kb on - strand, within SMa1910at 1087.568 kb on + strandat 1087.651 kb on + strandat 1087.651 kb on + strandat 1087.654 kb on + strandat 1087.689 kb on + strandat 1087.689 kb on + strandat 1087.712 kb on + strandat 1087.713 kb on - strandat 1087.880 kb on + strandat 1087.881 kb on - strandat 1087.881 kb on - strandat 1087.903 kb on - strandat 1088.053 kb on - strand, within SMa1913at 1088.168 kb on - strand, within SMa1913at 1088.168 kb on - strand, within SMa1913at 1088.385 kb on + strand, within SMa1913at 1088.386 kb on - strand, within SMa1913at 1088.502 kb on - strand, within SMa1913

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,086,678 + -0.1
1,086,685 + -0.1
1,086,685 + -1.4
1,086,685 + +1.5
1,086,686 - -0.1
1,086,687 + -0.9
1,086,688 - -0.2
1,086,688 - +0.3
1,086,688 - -0.2
1,086,688 - +0.2
1,086,989 + +0.6
1,087,009 + +0.5
1,087,009 + +0.1
1,087,009 + +0.0
1,087,009 + -0.7
1,087,009 + -0.3
1,087,009 + -0.0
1,087,009 + +0.2
1,087,010 - -0.3
1,087,010 - -0.1
1,087,010 - -0.6
1,087,010 - +1.8
1,087,011 + +0.1
1,087,011 + +0.6
1,087,012 - -1.5
1,087,012 - -0.5
1,087,013 + -0.2
1,087,013 + -0.1
1,087,014 - +0.5
1,087,014 - -0.2
1,087,014 - -0.2
1,087,014 - +0.1
1,087,064 + +0.7
1,087,065 - -0.1
1,087,065 - -1.0
1,087,078 - -1.8
1,087,136 - -1.1
1,087,136 - -0.2
1,087,139 + -0.6
1,087,175 - +0.2
1,087,185 + +0.1
1,087,214 + -0.8
1,087,275 - +0.1
1,087,341 + SMa1910 0.28 -0.1
1,087,465 + SMa1910 0.73 -0.2
1,087,466 - SMa1910 0.73 -0.2
1,087,487 - SMa1910 0.81 -0.1
1,087,511 - SMa1910 0.89 -0.2
1,087,511 - SMa1910 0.89 +0.5
1,087,568 + -1.0
1,087,651 + +0.5
1,087,651 + +0.3
1,087,654 + +0.7
1,087,689 + +0.3
1,087,689 + -0.7
1,087,712 + -0.4
1,087,713 - -0.9
1,087,880 + -1.1
1,087,881 - -0.1
1,087,881 - -1.6
1,087,903 - -1.9
1,088,053 - SMa1913 0.12 -0.7
1,088,168 - SMa1913 0.21 +0.2
1,088,168 - SMa1913 0.21 +1.0
1,088,385 + SMa1913 0.36 -1.7
1,088,386 - SMa1913 0.36 +0.5
1,088,502 - SMa1913 0.45 -0.2

Or see this region's nucleotide sequence