Strain Fitness in Sinorhizobium meliloti 1021 around SMa1501

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1500 and SMa1501 are separated by 24 nucleotidesSMa1501 and SMa1503 are separated by 30 nucleotides SMa1500: SMa1500 - oxidoreductase/oxygenase, at 826,564 to 828,330 SMa1500 SMa1501: SMa1501 - hypothetical protein, at 828,355 to 829,269 SMa1501 SMa1503: SMa1503 - hypothetical protein, at 829,300 to 830,166 SMa1503 Position (kb) 828 829 830Strain fitness (log2 ratio) -1 0 1at 827.360 kb on + strand, within SMa1500at 827.360 kb on + strand, within SMa1500at 827.637 kb on - strand, within SMa1500at 827.823 kb on + strand, within SMa1500at 827.956 kb on - strand, within SMa1500at 828.006 kb on - strand, within SMa1500at 828.006 kb on - strand, within SMa1500at 828.028 kb on - strand, within SMa1500at 828.028 kb on - strand, within SMa1500at 828.076 kb on - strand, within SMa1500at 828.077 kb on + strand, within SMa1500at 828.077 kb on + strand, within SMa1500at 828.077 kb on + strandat 828.078 kb on - strand, within SMa1500at 828.078 kb on - strand, within SMa1500at 828.078 kb on - strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.082 kb on - strand, within SMa1500at 828.082 kb on - strand, within SMa1500at 828.104 kb on + strand, within SMa1500at 828.104 kb on + strand, within SMa1500at 828.105 kb on - strand, within SMa1500at 828.119 kb on + strand, within SMa1500at 828.199 kb on - strandat 828.207 kb on - strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.380 kb on + strandat 828.413 kb on + strandat 828.582 kb on + strand, within SMa1501at 828.582 kb on + strand, within SMa1501at 828.583 kb on - strand, within SMa1501at 828.583 kb on - strand, within SMa1501at 828.583 kb on - strand, within SMa1501at 828.669 kb on - strand, within SMa1501at 828.684 kb on - strand, within SMa1501at 828.701 kb on + strand, within SMa1501at 828.701 kb on + strand, within SMa1501at 828.701 kb on + strand, within SMa1501at 828.702 kb on - strand, within SMa1501at 828.702 kb on - strand, within SMa1501at 828.702 kb on - strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.813 kb on - strand, within SMa1501at 828.813 kb on - strand, within SMa1501at 828.863 kb on + strand, within SMa1501at 828.965 kb on + strand, within SMa1501at 829.018 kb on - strand, within SMa1501at 829.018 kb on - strand, within SMa1501at 829.060 kb on - strand, within SMa1501at 829.060 kb on - strand, within SMa1501at 829.060 kb on - strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.140 kb on - strand, within SMa1501at 829.140 kb on - strand, within SMa1501at 829.140 kb on - strand, within SMa1501at 829.292 kb on + strandat 829.293 kb on - strandat 829.359 kb on - strandat 829.514 kb on + strand, within SMa1503at 829.576 kb on + strand, within SMa1503at 829.576 kb on + strand, within SMa1503at 829.593 kb on + strand, within SMa1503at 829.613 kb on + strand, within SMa1503at 829.613 kb on + strand, within SMa1503at 829.646 kb on + strand, within SMa1503at 829.646 kb on + strand, within SMa1503at 829.647 kb on - strand, within SMa1503at 829.652 kb on + strand, within SMa1503at 829.652 kb on + strand, within SMa1503at 829.653 kb on - strand, within SMa1503at 829.653 kb on - strand, within SMa1503at 829.751 kb on + strand, within SMa1503at 829.826 kb on - strand, within SMa1503at 829.869 kb on + strand, within SMa1503at 829.870 kb on - strand, within SMa1503at 829.870 kb on - strand, within SMa1503at 829.889 kb on + strand, within SMa1503at 829.890 kb on - strand, within SMa1503

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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827,360 + SMa1500 0.45 -0.8
827,360 + SMa1500 0.45 -0.5
827,637 - SMa1500 0.61 -0.0
827,823 + SMa1500 0.71 -1.5
827,956 - SMa1500 0.79 -0.1
828,006 - SMa1500 0.82 +0.4
828,006 - SMa1500 0.82 +0.7
828,028 - SMa1500 0.83 +0.4
828,028 - SMa1500 0.83 -0.7
828,076 - SMa1500 0.86 +0.2
828,077 + SMa1500 0.86 +1.4
828,077 + SMa1500 0.86 -1.2
828,077 + -0.2
828,078 - SMa1500 0.86 +1.0
828,078 - SMa1500 0.86 +0.4
828,078 - SMa1500 0.86 -0.0
828,081 + SMa1500 0.86 +0.2
828,081 + SMa1500 0.86 -0.3
828,081 + SMa1500 0.86 +0.5
828,081 + SMa1500 0.86 -0.5
828,082 - SMa1500 0.86 +0.1
828,082 - SMa1500 0.86 +1.0
828,104 + SMa1500 0.87 +0.1
828,104 + SMa1500 0.87 +0.1
828,105 - SMa1500 0.87 +0.4
828,119 + SMa1500 0.88 -0.0
828,199 - -1.6
828,207 - +0.6
828,284 + -0.7
828,284 + +1.2
828,284 + +0.1
828,284 + +0.4
828,285 - -0.5
828,285 - -0.0
828,285 - +0.3
828,285 - -0.1
828,380 + +0.3
828,413 + +0.1
828,582 + SMa1501 0.25 -0.6
828,582 + SMa1501 0.25 +0.7
828,583 - SMa1501 0.25 +0.6
828,583 - SMa1501 0.25 +0.8
828,583 - SMa1501 0.25 +0.2
828,669 - SMa1501 0.34 +1.5
828,684 - SMa1501 0.36 +0.1
828,701 + SMa1501 0.38 +0.2
828,701 + SMa1501 0.38 -0.6
828,701 + SMa1501 0.38 +0.1
828,702 - SMa1501 0.38 +0.0
828,702 - SMa1501 0.38 +0.2
828,702 - SMa1501 0.38 +0.4
828,707 + SMa1501 0.38 +0.1
828,707 + SMa1501 0.38 -0.3
828,707 + SMa1501 0.38 -0.0
828,707 + SMa1501 0.38 +0.1
828,813 - SMa1501 0.50 +0.3
828,813 - SMa1501 0.50 -0.2
828,863 + SMa1501 0.56 -0.5
828,965 + SMa1501 0.67 +0.1
829,018 - SMa1501 0.72 -1.0
829,018 - SMa1501 0.72 +0.4
829,060 - SMa1501 0.77 +1.1
829,060 - SMa1501 0.77 +1.0
829,060 - SMa1501 0.77 +0.2
829,139 + SMa1501 0.86 +1.3
829,139 + SMa1501 0.86 -0.1
829,139 + SMa1501 0.86 -0.1
829,139 + SMa1501 0.86 -0.3
829,139 + SMa1501 0.86 +1.3
829,139 + SMa1501 0.86 +0.2
829,140 - SMa1501 0.86 -0.0
829,140 - SMa1501 0.86 +0.4
829,140 - SMa1501 0.86 +0.1
829,292 + +0.3
829,293 - +0.1
829,359 - -0.3
829,514 + SMa1503 0.25 -0.0
829,576 + SMa1503 0.32 -0.8
829,576 + SMa1503 0.32 -0.2
829,593 + SMa1503 0.34 +0.2
829,613 + SMa1503 0.36 -0.3
829,613 + SMa1503 0.36 +1.0
829,646 + SMa1503 0.40 -0.3
829,646 + SMa1503 0.40 -0.6
829,647 - SMa1503 0.40 -0.2
829,652 + SMa1503 0.41 +0.1
829,652 + SMa1503 0.41 +1.2
829,653 - SMa1503 0.41 -0.1
829,653 - SMa1503 0.41 -0.4
829,751 + SMa1503 0.52 -0.4
829,826 - SMa1503 0.61 -0.3
829,869 + SMa1503 0.66 -1.0
829,870 - SMa1503 0.66 -0.2
829,870 - SMa1503 0.66 -0.5
829,889 + SMa1503 0.68 -0.1
829,890 - SMa1503 0.68 +0.1

Or see this region's nucleotide sequence