Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20827 and SM_b20828 are separated by 222 nucleotides SM_b20828 and SM_b21663 overlap by 4 nucleotides SM_b21663 and SM_b21664 are separated by 99 nucleotides SM_b21664 and SM_b21665 are separated by 57 nucleotides SM_b21665 and SM_b20829 are separated by 46 nucleotides
SM_b20827: SM_b20827 - transposase, at 617,618 to 618,205
_b20827
SM_b20828: SM_b20828 - hypothetical protein, at 618,428 to 618,703
_b20828
SM_b21663: SM_b21663 - hypothetical protein, at 618,700 to 619,116
_b21663
SM_b21664: SM_b21664 - hypothetical protein, at 619,216 to 619,485
_b21664
SM_b21665: SM_b21665 - hypothetical protein, at 619,543 to 619,899
_b21665
SM_b20829: SM_b20829 - secreted calcium-binding protein, at 619,946 to 621,625
_b20829
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1 at 617.949 kb on - strand, within SM_b20827 at 617.949 kb on - strand at 617.963 kb on + strand, within SM_b20827 at 617.964 kb on - strand, within SM_b20827 at 618.128 kb on + strand, within SM_b20827 at 618.129 kb on - strand, within SM_b20827 at 618.196 kb on - strand at 618.198 kb on + strand at 618.198 kb on + strand at 618.198 kb on + strand at 618.199 kb on - strand at 618.204 kb on - strand at 618.204 kb on - strand at 618.354 kb on + strand at 618.355 kb on - strand at 618.394 kb on - strand at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.491 kb on + strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.537 kb on - strand, within SM_b20828 at 618.789 kb on + strand, within SM_b21663 at 618.941 kb on + strand, within SM_b21663 at 618.954 kb on - strand, within SM_b21663 at 619.084 kb on + strand at 619.085 kb on - strand at 619.231 kb on + strand at 619.293 kb on - strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.755 kb on + strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.892 kb on + strand at 619.893 kb on - strand at 619.935 kb on - strand at 619.978 kb on + strand at 619.978 kb on + strand at 619.979 kb on - strand at 620.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 617,949 - SM_b20827 0.56 +0.3 617,949 - +1.0 617,963 + SM_b20827 0.59 +1.5 617,964 - SM_b20827 0.59 -1.3 618,128 + SM_b20827 0.87 -1.4 618,129 - SM_b20827 0.87 +0.5 618,196 - +0.9 618,198 + +0.4 618,198 + -0.7 618,198 + -0.8 618,199 - -0.4 618,204 - -0.1 618,204 - +0.1 618,354 + -0.2 618,355 - -0.4 618,394 - +0.2 618,479 + SM_b20828 0.18 -0.4 618,479 + SM_b20828 0.18 -0.1 618,479 + SM_b20828 0.18 +0.0 618,491 + SM_b20828 0.23 +0.1 618,492 - SM_b20828 0.23 +0.4 618,492 - SM_b20828 0.23 +0.5 618,492 - SM_b20828 0.23 +0.4 618,492 - SM_b20828 0.23 +0.5 618,537 - SM_b20828 0.39 +0.2 618,789 + SM_b21663 0.21 -0.7 618,941 + SM_b21663 0.58 -0.3 618,954 - SM_b21663 0.61 -1.0 619,084 + +1.7 619,085 - -2.1 619,231 + -0.1 619,293 - SM_b21664 0.29 +0.0 619,402 + SM_b21664 0.69 -0.7 619,402 + SM_b21664 0.69 -1.0 619,402 + SM_b21664 0.69 +0.6 619,402 + SM_b21664 0.69 +0.1 619,403 - SM_b21664 0.69 +1.5 619,403 - SM_b21664 0.69 +0.2 619,435 + SM_b21664 0.81 -0.5 619,435 + SM_b21664 0.81 -0.1 619,435 + SM_b21664 0.81 +1.2 619,436 - SM_b21664 0.81 +0.2 619,436 - SM_b21664 0.81 +0.3 619,436 - SM_b21664 0.81 +0.5 619,436 - SM_b21664 0.81 +0.2 619,755 + SM_b21665 0.59 -0.1 619,756 - SM_b21665 0.60 +0.0 619,756 - SM_b21665 0.60 +0.2 619,892 + +0.4 619,893 - +0.3 619,935 - -0.3 619,978 + -0.4 619,978 + -1.3 619,979 - +0.4 620,067 + +0.8
Or see this region's nucleotide sequence