Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20830

Experiment: cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14405 and BBR_RS20830 are separated by 37 nucleotidesBBR_RS20830 and BBR_RS14410 are separated by 173 nucleotides BBR_RS14405: BBR_RS14405 - glutamine-hydrolyzing GMP synthase, at 1,005,796 to 1,007,358 _RS14405 BBR_RS20830: BBR_RS20830 - hypothetical protein, at 1,007,396 to 1,007,632 _RS20830 BBR_RS14410: BBR_RS14410 - phosphoketolase, at 1,007,806 to 1,010,283 _RS14410 Position (kb) 1007 1008Strain fitness (log2 ratio) -1 0 1at 1007.401 kb on - strandat 1007.433 kb on + strand, within BBR_RS20830at 1007.532 kb on + strand, within BBR_RS20830at 1007.576 kb on + strand, within BBR_RS20830

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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1,007,401 - +0.2
1,007,433 + BBR_RS20830 0.16 -0.1
1,007,532 + BBR_RS20830 0.57 -0.8
1,007,576 + BBR_RS20830 0.76 +0.6

Or see this region's nucleotide sequence