Experiment: cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11335 and BBR_RS11340 are separated by 358 nucleotides BBR_RS11340 and BBR_RS11345 overlap by 52 nucleotides
BBR_RS11335: BBR_RS11335 - ATPase AAA, at 293,575 to 294,360
_RS11335
BBR_RS11340: BBR_RS11340 - TetR/AcrR family transcriptional regulator, at 294,719 to 295,354
_RS11340
BBR_RS11345: BBR_RS11345 - 4'-phosphopantetheinyl transferase, at 295,303 to 295,950
_RS11345
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.430 kb on + strand at 294.430 kb on + strand at 294.430 kb on + strand at 294.430 kb on + strand at 294.515 kb on + strand at 294.515 kb on + strand at 294.523 kb on - strand at 294.549 kb on + strand at 294.557 kb on - strand at 294.557 kb on - strand at 294.609 kb on + strand at 294.609 kb on + strand at 294.609 kb on + strand at 294.609 kb on + strand at 294.615 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.617 kb on - strand at 294.628 kb on - strand at 294.644 kb on + strand at 294.644 kb on + strand at 294.652 kb on - strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.671 kb on - strand at 294.707 kb on + strand at 294.827 kb on - strand, within BBR_RS11340 at 294.835 kb on - strand, within BBR_RS11340 at 294.836 kb on + strand, within BBR_RS11340 at 294.865 kb on - strand, within BBR_RS11340 at 294.868 kb on - strand, within BBR_RS11340 at 294.928 kb on - strand, within BBR_RS11340 at 294.933 kb on - strand, within BBR_RS11340 at 294.935 kb on + strand, within BBR_RS11340 at 294.942 kb on + strand, within BBR_RS11340 at 294.992 kb on + strand, within BBR_RS11340 at 294.993 kb on - strand, within BBR_RS11340 at 295.007 kb on + strand, within BBR_RS11340 at 295.015 kb on - strand, within BBR_RS11340 at 295.015 kb on - strand, within BBR_RS11340 at 295.015 kb on - strand, within BBR_RS11340 at 295.015 kb on - strand, within BBR_RS11340 at 295.015 kb on - strand, within BBR_RS11340 at 295.024 kb on + strand, within BBR_RS11340 at 295.032 kb on - strand, within BBR_RS11340 at 295.043 kb on + strand, within BBR_RS11340 at 295.052 kb on + strand, within BBR_RS11340 at 295.052 kb on + strand, within BBR_RS11340 at 295.062 kb on - strand, within BBR_RS11340 at 295.087 kb on - strand, within BBR_RS11340 at 295.155 kb on + strand, within BBR_RS11340 at 295.195 kb on - strand, within BBR_RS11340 at 295.195 kb on - strand, within BBR_RS11340 at 295.200 kb on - strand, within BBR_RS11340 at 295.200 kb on - strand, within BBR_RS11340 at 295.228 kb on + strand, within BBR_RS11340 at 295.249 kb on + strand, within BBR_RS11340 at 295.256 kb on + strand, within BBR_RS11340 at 295.256 kb on + strand, within BBR_RS11340 at 295.268 kb on - strand, within BBR_RS11340 at 295.278 kb on - strand, within BBR_RS11340 at 295.282 kb on + strand, within BBR_RS11340 at 295.284 kb on + strand, within BBR_RS11340 at 295.290 kb on - strand, within BBR_RS11340 at 295.290 kb on - strand, within BBR_RS11340 at 295.292 kb on - strand at 295.292 kb on - strand at 295.299 kb on - strand at 295.299 kb on - strand at 295.301 kb on + strand at 295.301 kb on + strand at 295.301 kb on + strand at 295.308 kb on - strand at 295.309 kb on - strand at 295.310 kb on + strand at 295.310 kb on + strand at 295.312 kb on + strand at 295.318 kb on - strand at 295.347 kb on - strand at 295.384 kb on + strand, within BBR_RS11345 at 295.402 kb on + strand, within BBR_RS11345 at 295.413 kb on + strand, within BBR_RS11345 at 295.419 kb on + strand, within BBR_RS11345 at 295.423 kb on + strand, within BBR_RS11345 at 295.443 kb on + strand, within BBR_RS11345 at 295.443 kb on + strand, within BBR_RS11345 at 295.448 kb on + strand, within BBR_RS11345 at 295.456 kb on - strand, within BBR_RS11345 at 295.456 kb on - strand, within BBR_RS11345 at 295.478 kb on - strand, within BBR_RS11345 at 295.480 kb on + strand, within BBR_RS11345 at 295.503 kb on + strand, within BBR_RS11345 at 295.503 kb on + strand, within BBR_RS11345 at 295.515 kb on - strand, within BBR_RS11345 at 295.520 kb on - strand, within BBR_RS11345 at 295.520 kb on - strand, within BBR_RS11345 at 295.525 kb on - strand, within BBR_RS11345 at 295.530 kb on - strand, within BBR_RS11345 at 295.535 kb on + strand, within BBR_RS11345 at 295.545 kb on + strand, within BBR_RS11345 at 295.545 kb on + strand, within BBR_RS11345 at 295.547 kb on + strand, within BBR_RS11345 at 295.553 kb on - strand, within BBR_RS11345 at 295.579 kb on + strand, within BBR_RS11345 at 295.587 kb on - strand, within BBR_RS11345 at 295.597 kb on + strand, within BBR_RS11345 at 295.597 kb on + strand, within BBR_RS11345 at 295.610 kb on - strand, within BBR_RS11345 at 295.636 kb on + strand, within BBR_RS11345 at 295.664 kb on + strand, within BBR_RS11345 at 295.664 kb on - strand, within BBR_RS11345 at 295.694 kb on + strand, within BBR_RS11345 at 295.694 kb on - strand, within BBR_RS11345 at 295.697 kb on - strand, within BBR_RS11345 at 295.702 kb on - strand, within BBR_RS11345 at 295.718 kb on + strand, within BBR_RS11345 at 295.719 kb on - strand, within BBR_RS11345 at 295.733 kb on - strand, within BBR_RS11345 at 295.733 kb on - strand, within BBR_RS11345 at 295.742 kb on - strand, within BBR_RS11345 at 295.750 kb on + strand, within BBR_RS11345 at 295.750 kb on + strand, within BBR_RS11345 at 295.758 kb on - strand, within BBR_RS11345 at 295.764 kb on - strand, within BBR_RS11345 at 295.825 kb on + strand, within BBR_RS11345 at 295.881 kb on - strand, within BBR_RS11345 at 295.881 kb on - strand, within BBR_RS11345 at 295.889 kb on - strand at 295.889 kb on - strand at 295.889 kb on - strand at 295.904 kb on + strand at 295.904 kb on + strand at 295.909 kb on + strand at 295.914 kb on + strand at 295.928 kb on + strand at 295.935 kb on + strand at 295.935 kb on + strand at 295.943 kb on - strand at 295.948 kb on - strand at 295.958 kb on - strand at 295.965 kb on - strand at 295.995 kb on - strand at 296.018 kb on + strand at 296.025 kb on + strand at 296.026 kb on - strand at 296.026 kb on - strand at 296.026 kb on - strand at 296.037 kb on + strand at 296.076 kb on + strand at 296.086 kb on + strand at 296.094 kb on - strand at 296.094 kb on - strand at 296.121 kb on - strand at 296.168 kb on - strand at 296.168 kb on - strand at 296.168 kb on - strand at 296.172 kb on + strand at 296.172 kb on + strand at 296.179 kb on + strand at 296.180 kb on - strand at 296.187 kb on - strand at 296.187 kb on - strand at 296.192 kb on + strand at 296.192 kb on + strand at 296.192 kb on + strand at 296.200 kb on - strand at 296.200 kb on - strand at 296.218 kb on + strand at 296.218 kb on + strand at 296.226 kb on + strand at 296.242 kb on + strand at 296.242 kb on + strand at 296.251 kb on - strand at 296.300 kb on + strand at 296.300 kb on + strand at 296.326 kb on + strand at 296.334 kb on + strand at 296.335 kb on - strand at 296.335 kb on - strand at 296.337 kb on + strand at 296.342 kb on + strand at 296.342 kb on + strand at 296.350 kb on - strand at 296.350 kb on - strand at 296.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 294,430 + +0.3 294,430 + -0.8 294,430 + -0.2 294,430 + -0.6 294,515 + -1.7 294,515 + +0.4 294,523 - -0.6 294,549 + -0.5 294,557 - -0.4 294,557 - -0.1 294,609 + -0.3 294,609 + +0.8 294,609 + +1.2 294,609 + +0.4 294,615 - -1.6 294,617 - -2.2 294,617 - +0.7 294,617 - +1.6 294,617 - -1.5 294,617 - -0.6 294,617 - +1.5 294,617 - +0.3 294,617 - +0.5 294,617 - -1.2 294,617 - +1.3 294,628 - +0.8 294,644 + +0.3 294,644 + -0.0 294,652 - -0.8 294,654 + +0.2 294,654 + +0.5 294,671 - -1.3 294,707 + +1.0 294,827 - BBR_RS11340 0.17 -0.3 294,835 - BBR_RS11340 0.18 -0.3 294,836 + BBR_RS11340 0.18 -1.3 294,865 - BBR_RS11340 0.23 +0.2 294,868 - BBR_RS11340 0.23 -0.8 294,928 - BBR_RS11340 0.33 -1.7 294,933 - BBR_RS11340 0.34 -0.2 294,935 + BBR_RS11340 0.34 -1.0 294,942 + BBR_RS11340 0.35 -0.1 294,992 + BBR_RS11340 0.43 -1.5 294,993 - BBR_RS11340 0.43 -0.6 295,007 + BBR_RS11340 0.45 -0.6 295,015 - BBR_RS11340 0.47 -0.8 295,015 - BBR_RS11340 0.47 +1.1 295,015 - BBR_RS11340 0.47 -0.5 295,015 - BBR_RS11340 0.47 -0.8 295,015 - BBR_RS11340 0.47 -0.4 295,024 + BBR_RS11340 0.48 -0.1 295,032 - BBR_RS11340 0.49 -0.7 295,043 + BBR_RS11340 0.51 -0.8 295,052 + BBR_RS11340 0.52 -0.5 295,052 + BBR_RS11340 0.52 -1.1 295,062 - BBR_RS11340 0.54 -0.7 295,087 - BBR_RS11340 0.58 +0.2 295,155 + BBR_RS11340 0.69 +0.2 295,195 - BBR_RS11340 0.75 +0.5 295,195 - BBR_RS11340 0.75 -0.5 295,200 - BBR_RS11340 0.76 +0.4 295,200 - BBR_RS11340 0.76 -1.0 295,228 + BBR_RS11340 0.80 +1.1 295,249 + BBR_RS11340 0.83 -0.5 295,256 + BBR_RS11340 0.84 +0.3 295,256 + BBR_RS11340 0.84 -0.0 295,268 - BBR_RS11340 0.86 +1.4 295,278 - BBR_RS11340 0.88 +0.0 295,282 + BBR_RS11340 0.89 -0.5 295,284 + BBR_RS11340 0.89 -0.5 295,290 - BBR_RS11340 0.90 -0.1 295,290 - BBR_RS11340 0.90 -0.0 295,292 - +1.5 295,292 - -0.8 295,299 - -1.3 295,299 - -0.7 295,301 + -0.1 295,301 + -0.2 295,301 + +0.2 295,308 - +0.2 295,309 - -1.3 295,310 + -0.2 295,310 + -1.7 295,312 + +0.4 295,318 - +0.3 295,347 - -0.2 295,384 + BBR_RS11345 0.12 +0.5 295,402 + BBR_RS11345 0.15 +0.0 295,413 + BBR_RS11345 0.17 -0.1 295,419 + BBR_RS11345 0.18 +0.2 295,423 + BBR_RS11345 0.19 -1.1 295,443 + BBR_RS11345 0.22 -0.6 295,443 + BBR_RS11345 0.22 -0.8 295,448 + BBR_RS11345 0.22 -0.6 295,456 - BBR_RS11345 0.24 +0.2 295,456 - BBR_RS11345 0.24 +0.4 295,478 - BBR_RS11345 0.27 +1.5 295,480 + BBR_RS11345 0.27 +1.1 295,503 + BBR_RS11345 0.31 +0.5 295,503 + BBR_RS11345 0.31 +0.2 295,515 - BBR_RS11345 0.33 +0.0 295,520 - BBR_RS11345 0.33 -1.9 295,520 - BBR_RS11345 0.33 +0.0 295,525 - BBR_RS11345 0.34 -0.1 295,530 - BBR_RS11345 0.35 +0.8 295,535 + BBR_RS11345 0.36 -0.6 295,545 + BBR_RS11345 0.37 +0.2 295,545 + BBR_RS11345 0.37 -0.1 295,547 + BBR_RS11345 0.38 -0.1 295,553 - BBR_RS11345 0.39 -0.2 295,579 + BBR_RS11345 0.43 -0.4 295,587 - BBR_RS11345 0.44 +0.5 295,597 + BBR_RS11345 0.45 +0.7 295,597 + BBR_RS11345 0.45 +0.2 295,610 - BBR_RS11345 0.47 +0.9 295,636 + BBR_RS11345 0.51 -0.6 295,664 + BBR_RS11345 0.56 -0.0 295,664 - BBR_RS11345 0.56 +0.2 295,694 + BBR_RS11345 0.60 +0.1 295,694 - BBR_RS11345 0.60 +0.4 295,697 - BBR_RS11345 0.61 -0.4 295,702 - BBR_RS11345 0.62 +0.5 295,718 + BBR_RS11345 0.64 +1.2 295,719 - BBR_RS11345 0.64 +0.8 295,733 - BBR_RS11345 0.66 -1.0 295,733 - BBR_RS11345 0.66 +0.1 295,742 - BBR_RS11345 0.68 +1.2 295,750 + BBR_RS11345 0.69 +0.7 295,750 + BBR_RS11345 0.69 +0.9 295,758 - BBR_RS11345 0.70 -0.5 295,764 - BBR_RS11345 0.71 -0.8 295,825 + BBR_RS11345 0.81 +0.6 295,881 - BBR_RS11345 0.89 +1.5 295,881 - BBR_RS11345 0.89 +1.0 295,889 - -0.5 295,889 - -0.1 295,889 - -0.0 295,904 + +1.1 295,904 + -0.6 295,909 + +0.2 295,914 + +0.0 295,928 + -0.5 295,935 + -0.1 295,935 + -1.0 295,943 - -0.0 295,948 - +1.0 295,958 - -1.4 295,965 - +0.1 295,995 - +0.1 296,018 + -1.0 296,025 + +0.5 296,026 - +1.8 296,026 - -0.5 296,026 - -0.3 296,037 + +0.5 296,076 + -0.2 296,086 + -1.2 296,094 - +1.4 296,094 - +0.3 296,121 - +0.4 296,168 - -0.7 296,168 - +0.4 296,168 - -1.3 296,172 + -2.1 296,172 + -1.1 296,179 + +1.2 296,180 - -1.0 296,187 - +0.2 296,187 - +0.1 296,192 + -0.8 296,192 + -0.8 296,192 + +0.5 296,200 - +0.5 296,200 - +0.1 296,218 + +0.0 296,218 + +1.0 296,226 + -0.5 296,242 + -1.2 296,242 + +1.3 296,251 - +0.1 296,300 + -1.3 296,300 + -0.8 296,326 + -0.1 296,334 + +1.1 296,335 - +0.6 296,335 - -0.7 296,337 + +0.1 296,342 + +2.5 296,342 + +2.2 296,350 - -0.8 296,350 - -1.2 296,350 - +0.8
Or see this region's nucleotide sequence