Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15530

Experiment: cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS15525 and BBR_RS15530 are separated by 156 nucleotidesBBR_RS15530 and BBR_RS15535 are separated by 158 nucleotides BBR_RS15525: BBR_RS15525 - RNase adapter RapZ, at 1,257,151 to 1,258,116 _RS15525 BBR_RS15530: BBR_RS15530 - DNA-binding protein WhiA, at 1,258,273 to 1,259,223 _RS15530 BBR_RS15535: BBR_RS15535 - phosphoglycerate kinase, at 1,259,382 to 1,260,587 _RS15535 Position (kb) 1258 1259 1260Strain fitness (log2 ratio) -2 -1 0 1 2at 1257.304 kb on - strand, within BBR_RS15525at 1257.331 kb on + strand, within BBR_RS15525at 1257.392 kb on - strand, within BBR_RS15525at 1257.616 kb on + strand, within BBR_RS15525at 1257.616 kb on + strand, within BBR_RS15525at 1257.688 kb on - strand, within BBR_RS15525at 1257.724 kb on + strand, within BBR_RS15525at 1257.739 kb on + strand, within BBR_RS15525at 1257.747 kb on - strand, within BBR_RS15525at 1257.771 kb on + strand, within BBR_RS15525at 1257.784 kb on - strand, within BBR_RS15525at 1257.803 kb on + strand, within BBR_RS15525at 1257.883 kb on + strand, within BBR_RS15525at 1257.928 kb on - strand, within BBR_RS15525at 1257.967 kb on + strand, within BBR_RS15525at 1257.996 kb on - strand, within BBR_RS15525at 1257.996 kb on - strand, within BBR_RS15525at 1257.997 kb on - strand, within BBR_RS15525at 1258.029 kb on - strandat 1258.072 kb on - strandat 1259.300 kb on + strandat 1259.323 kb on - strandat 1259.324 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
remove
1,257,304 - BBR_RS15525 0.16 +0.8
1,257,331 + BBR_RS15525 0.19 -0.3
1,257,392 - BBR_RS15525 0.25 +0.1
1,257,616 + BBR_RS15525 0.48 +1.2
1,257,616 + BBR_RS15525 0.48 +0.1
1,257,688 - BBR_RS15525 0.56 +1.0
1,257,724 + BBR_RS15525 0.59 -2.2
1,257,739 + BBR_RS15525 0.61 +0.3
1,257,747 - BBR_RS15525 0.62 -0.8
1,257,771 + BBR_RS15525 0.64 -0.7
1,257,784 - BBR_RS15525 0.66 -0.1
1,257,803 + BBR_RS15525 0.67 -0.5
1,257,883 + BBR_RS15525 0.76 -0.4
1,257,928 - BBR_RS15525 0.80 -0.1
1,257,967 + BBR_RS15525 0.84 -0.6
1,257,996 - BBR_RS15525 0.87 +2.0
1,257,996 - BBR_RS15525 0.87 +0.2
1,257,997 - BBR_RS15525 0.88 +0.3
1,258,029 - -0.4
1,258,072 - -0.2
1,259,300 + +1.1
1,259,323 - +0.2
1,259,324 + -0.6

Or see this region's nucleotide sequence