Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00771 and SMc00772 are separated by 4 nucleotides SMc00772 and SMc00773 are separated by 3 nucleotides SMc00773 and SMc00838 are separated by 293 nucleotides
SMc00771: SMc00771 - putrescine ABC transporter ATP-binding protein, at 784,466 to 785,611
SMc00771
SMc00772: SMc00772 - putrescine ABC transporter permease, at 785,616 to 786,527
SMc00772
SMc00773: SMc00773 - putrescine ABC transporter permease, at 786,531 to 787,352
SMc00773
SMc00838: SMc00838 - hypothetical protein, at 787,646 to 789,460
SMc00838
Position (kb) 786
787
788 Strain fitness (log2 ratio) -2
-1
0
1
2 at 785.598 kb on + strand at 785.598 kb on + strand at 785.656 kb on + strand at 785.656 kb on + strand at 785.656 kb on + strand at 785.657 kb on - strand at 785.668 kb on - strand at 785.668 kb on - strand at 785.668 kb on - strand at 785.754 kb on + strand, within SMc00772 at 785.754 kb on + strand, within SMc00772 at 785.754 kb on + strand, within SMc00772 at 785.754 kb on + strand, within SMc00772 at 785.754 kb on + strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.755 kb on - strand, within SMc00772 at 785.756 kb on + strand, within SMc00772 at 785.756 kb on + strand, within SMc00772 at 785.756 kb on + strand, within SMc00772 at 785.756 kb on + strand, within SMc00772 at 785.756 kb on + strand, within SMc00772 at 785.756 kb on + strand, within SMc00772 at 785.756 kb on + strand, within SMc00772 at 785.757 kb on - strand, within SMc00772 at 785.757 kb on - strand, within SMc00772 at 785.757 kb on - strand, within SMc00772 at 785.757 kb on - strand, within SMc00772 at 785.757 kb on - strand, within SMc00772 at 785.829 kb on + strand, within SMc00772 at 785.829 kb on + strand, within SMc00772 at 785.829 kb on + strand, within SMc00772 at 785.829 kb on + strand, within SMc00772 at 785.829 kb on + strand, within SMc00772 at 785.830 kb on - strand, within SMc00772 at 785.857 kb on - strand, within SMc00772 at 785.857 kb on - strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.868 kb on + strand, within SMc00772 at 785.869 kb on - strand, within SMc00772 at 785.869 kb on - strand, within SMc00772 at 785.938 kb on - strand, within SMc00772 at 786.027 kb on + strand, within SMc00772 at 786.028 kb on - strand, within SMc00772 at 786.135 kb on + strand, within SMc00772 at 786.135 kb on + strand, within SMc00772 at 786.135 kb on + strand, within SMc00772 at 786.135 kb on + strand, within SMc00772 at 786.135 kb on + strand, within SMc00772 at 786.135 kb on + strand, within SMc00772 at 786.136 kb on - strand, within SMc00772 at 786.156 kb on + strand, within SMc00772 at 786.157 kb on - strand, within SMc00772 at 786.157 kb on - strand, within SMc00772 at 786.157 kb on - strand, within SMc00772 at 786.157 kb on - strand, within SMc00772 at 786.473 kb on - strand at 786.483 kb on + strand at 786.530 kb on + strand at 786.530 kb on + strand at 786.530 kb on + strand at 786.530 kb on + strand at 786.531 kb on - strand at 786.588 kb on + strand at 786.588 kb on + strand at 786.589 kb on - strand at 786.796 kb on - strand, within SMc00773 at 786.837 kb on + strand, within SMc00773 at 786.837 kb on + strand, within SMc00773 at 786.837 kb on + strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.941 kb on + strand, within SMc00773 at 787.191 kb on + strand, within SMc00773 at 787.191 kb on + strand, within SMc00773 at 787.191 kb on + strand, within SMc00773 at 787.192 kb on - strand, within SMc00773 at 787.192 kb on - strand, within SMc00773 at 787.384 kb on - strand at 787.384 kb on - strand at 787.640 kb on + strand at 787.641 kb on - strand at 787.641 kb on - strand at 788.227 kb on - strand, within SMc00838
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 785,598 + +0.1 785,598 + -0.3 785,656 + -0.2 785,656 + +1.7 785,656 + -0.6 785,657 - +0.4 785,668 - +0.4 785,668 - +0.5 785,668 - -0.2 785,754 + SMc00772 0.15 +0.1 785,754 + SMc00772 0.15 +0.2 785,754 + SMc00772 0.15 -0.6 785,754 + SMc00772 0.15 +1.0 785,754 + SMc00772 0.15 +0.9 785,755 - SMc00772 0.15 +0.1 785,755 - SMc00772 0.15 -0.3 785,755 - SMc00772 0.15 -0.3 785,755 - SMc00772 0.15 -0.8 785,755 - SMc00772 0.15 +0.4 785,755 - SMc00772 0.15 +0.1 785,755 - SMc00772 0.15 +0.1 785,755 - SMc00772 0.15 +0.1 785,755 - SMc00772 0.15 -0.6 785,755 - SMc00772 0.15 +0.4 785,756 + SMc00772 0.15 -1.1 785,756 + SMc00772 0.15 +0.3 785,756 + SMc00772 0.15 -0.5 785,756 + SMc00772 0.15 +0.1 785,756 + SMc00772 0.15 +0.4 785,756 + SMc00772 0.15 +0.9 785,756 + SMc00772 0.15 +0.3 785,757 - SMc00772 0.15 +2.1 785,757 - SMc00772 0.15 -0.4 785,757 - SMc00772 0.15 -0.1 785,757 - SMc00772 0.15 -0.1 785,757 - SMc00772 0.15 -0.2 785,829 + SMc00772 0.23 +0.5 785,829 + SMc00772 0.23 +0.5 785,829 + SMc00772 0.23 +0.1 785,829 + SMc00772 0.23 -0.0 785,829 + SMc00772 0.23 -0.6 785,830 - SMc00772 0.23 +0.7 785,857 - SMc00772 0.26 +0.6 785,857 - SMc00772 0.26 -0.4 785,868 + SMc00772 0.28 +0.7 785,868 + SMc00772 0.28 +1.7 785,868 + SMc00772 0.28 +1.3 785,868 + SMc00772 0.28 +0.2 785,868 + SMc00772 0.28 -0.0 785,868 + SMc00772 0.28 -2.2 785,868 + SMc00772 0.28 -0.6 785,868 + SMc00772 0.28 +0.4 785,869 - SMc00772 0.28 +0.4 785,869 - SMc00772 0.28 +0.5 785,938 - SMc00772 0.35 +0.5 786,027 + SMc00772 0.45 +0.3 786,028 - SMc00772 0.45 -0.3 786,135 + SMc00772 0.57 -0.1 786,135 + SMc00772 0.57 +0.2 786,135 + SMc00772 0.57 -0.1 786,135 + SMc00772 0.57 +0.0 786,135 + SMc00772 0.57 -0.1 786,135 + SMc00772 0.57 +0.2 786,136 - SMc00772 0.57 +0.1 786,156 + SMc00772 0.59 +0.1 786,157 - SMc00772 0.59 +0.2 786,157 - SMc00772 0.59 -0.7 786,157 - SMc00772 0.59 -0.1 786,157 - SMc00772 0.59 -0.1 786,473 - -1.0 786,483 + +1.1 786,530 + +0.1 786,530 + +0.1 786,530 + +0.9 786,530 + -0.3 786,531 - +0.1 786,588 + +0.4 786,588 + +0.2 786,589 - +0.4 786,796 - SMc00773 0.32 +0.6 786,837 + SMc00773 0.37 -0.0 786,837 + SMc00773 0.37 +0.0 786,837 + SMc00773 0.37 -0.1 786,838 - SMc00773 0.37 +0.6 786,838 - SMc00773 0.37 +1.5 786,838 - SMc00773 0.37 +0.0 786,838 - SMc00773 0.37 +0.2 786,941 + SMc00773 0.50 -0.3 787,191 + SMc00773 0.80 -0.3 787,191 + SMc00773 0.80 +0.2 787,191 + SMc00773 0.80 +0.2 787,192 - SMc00773 0.80 +0.7 787,192 - SMc00773 0.80 +0.2 787,384 - -0.5 787,384 - -1.6 787,640 + -0.1 787,641 - +0.0 787,641 - +0.5 788,227 - SMc00838 0.32 -0.1
Or see this region's nucleotide sequence