Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0306 and SMa0307 are separated by 340 nucleotides SMa0307 and SMa0308 are separated by 60 nucleotides
SMa0306: SMa0306 - histidine ammonia-lyase, at 170,035 to 171,675
SMa0306
SMa0307: SMa0307 - LysR family transcriptional regulator, at 172,016 to 173,002
SMa0307
SMa0308: SMa0308 - hypothetical protein, at 173,063 to 174,022
SMa0308
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.096 kb on - strand, within SMa0306 at 171.096 kb on - strand, within SMa0306 at 171.151 kb on - strand, within SMa0306 at 171.203 kb on + strand, within SMa0306 at 171.390 kb on + strand, within SMa0306 at 171.391 kb on - strand, within SMa0306 at 171.456 kb on - strand, within SMa0306 at 171.497 kb on + strand, within SMa0306 at 171.497 kb on + strand, within SMa0306 at 171.498 kb on - strand, within SMa0306 at 171.631 kb on + strand at 171.667 kb on + strand at 171.783 kb on + strand at 171.787 kb on + strand at 171.788 kb on - strand at 172.008 kb on - strand at 172.184 kb on + strand, within SMa0307 at 172.378 kb on + strand, within SMa0307 at 172.379 kb on - strand, within SMa0307 at 172.379 kb on - strand, within SMa0307 at 172.380 kb on + strand, within SMa0307 at 172.380 kb on + strand, within SMa0307 at 172.380 kb on + strand, within SMa0307 at 172.380 kb on + strand, within SMa0307 at 172.380 kb on + strand, within SMa0307 at 172.380 kb on + strand, within SMa0307 at 172.380 kb on + strand, within SMa0307 at 172.381 kb on - strand, within SMa0307 at 172.381 kb on - strand, within SMa0307 at 172.381 kb on - strand, within SMa0307 at 172.436 kb on + strand, within SMa0307 at 172.437 kb on - strand, within SMa0307 at 172.437 kb on - strand, within SMa0307 at 172.437 kb on - strand, within SMa0307 at 172.437 kb on - strand, within SMa0307 at 172.439 kb on + strand, within SMa0307 at 172.440 kb on - strand, within SMa0307 at 172.488 kb on + strand, within SMa0307 at 172.489 kb on - strand, within SMa0307 at 172.489 kb on - strand, within SMa0307 at 172.686 kb on - strand, within SMa0307 at 172.686 kb on - strand, within SMa0307 at 172.697 kb on + strand, within SMa0307 at 172.698 kb on - strand, within SMa0307 at 172.829 kb on + strand, within SMa0307 at 172.829 kb on + strand, within SMa0307 at 172.830 kb on - strand, within SMa0307 at 172.831 kb on + strand, within SMa0307 at 173.006 kb on + strand at 173.006 kb on + strand at 173.006 kb on + strand at 173.007 kb on - strand at 173.007 kb on - strand at 173.007 kb on - strand at 173.045 kb on + strand at 173.046 kb on - strand at 173.235 kb on + strand, within SMa0308 at 173.235 kb on + strand, within SMa0308 at 173.236 kb on - strand, within SMa0308 at 173.236 kb on - strand, within SMa0308 at 173.258 kb on + strand, within SMa0308 at 173.258 kb on + strand, within SMa0308 at 173.400 kb on + strand, within SMa0308 at 173.401 kb on - strand, within SMa0308 at 173.485 kb on + strand, within SMa0308 at 173.485 kb on + strand, within SMa0308 at 173.486 kb on - strand, within SMa0308 at 173.486 kb on - strand, within SMa0308 at 173.551 kb on - strand, within SMa0308 at 173.660 kb on + strand, within SMa0308 at 173.660 kb on + strand, within SMa0308 at 173.661 kb on - strand, within SMa0308 at 173.732 kb on + strand, within SMa0308 at 173.732 kb on + strand, within SMa0308 at 173.743 kb on + strand, within SMa0308 at 173.743 kb on + strand, within SMa0308 at 173.743 kb on + strand, within SMa0308 at 173.744 kb on - strand, within SMa0308 at 173.744 kb on - strand, within SMa0308 at 173.744 kb on - strand, within SMa0308 at 173.794 kb on - strand, within SMa0308 at 173.821 kb on + strand, within SMa0308 at 173.927 kb on + strand at 173.948 kb on - strand at 173.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 171,096 - SMa0306 0.65 -0.1 171,096 - SMa0306 0.65 -1.3 171,151 - SMa0306 0.68 -1.1 171,203 + SMa0306 0.71 -0.3 171,390 + SMa0306 0.83 +0.0 171,391 - SMa0306 0.83 -0.2 171,456 - SMa0306 0.87 +1.1 171,497 + SMa0306 0.89 -1.0 171,497 + SMa0306 0.89 -1.0 171,498 - SMa0306 0.89 +0.2 171,631 + -1.2 171,667 + -0.6 171,783 + -0.8 171,787 + -0.2 171,788 - +1.5 172,008 - +0.0 172,184 + SMa0307 0.17 -0.3 172,378 + SMa0307 0.37 -0.6 172,379 - SMa0307 0.37 +0.3 172,379 - SMa0307 0.37 +0.1 172,380 + SMa0307 0.37 +0.7 172,380 + SMa0307 0.37 -0.2 172,380 + SMa0307 0.37 -1.8 172,380 + SMa0307 0.37 -1.0 172,380 + SMa0307 0.37 -0.2 172,380 + SMa0307 0.37 +0.7 172,380 + SMa0307 0.37 +0.7 172,381 - SMa0307 0.37 -0.5 172,381 - SMa0307 0.37 +0.0 172,381 - SMa0307 0.37 -0.1 172,436 + SMa0307 0.43 +0.0 172,437 - SMa0307 0.43 +2.0 172,437 - SMa0307 0.43 +0.0 172,437 - SMa0307 0.43 +1.0 172,437 - SMa0307 0.43 -0.5 172,439 + SMa0307 0.43 -1.0 172,440 - SMa0307 0.43 +1.1 172,488 + SMa0307 0.48 -1.3 172,489 - SMa0307 0.48 -0.3 172,489 - SMa0307 0.48 -0.4 172,686 - SMa0307 0.68 +0.1 172,686 - SMa0307 0.68 -0.7 172,697 + SMa0307 0.69 -0.7 172,698 - SMa0307 0.69 -0.8 172,829 + SMa0307 0.82 +0.5 172,829 + SMa0307 0.82 +0.2 172,830 - SMa0307 0.82 -0.2 172,831 + SMa0307 0.83 -1.5 173,006 + +0.1 173,006 + +0.2 173,006 + -0.6 173,007 - +0.1 173,007 - -0.6 173,007 - -0.5 173,045 + +0.6 173,046 - -0.3 173,235 + SMa0308 0.18 +0.9 173,235 + SMa0308 0.18 +0.2 173,236 - SMa0308 0.18 -0.1 173,236 - SMa0308 0.18 +1.7 173,258 + SMa0308 0.20 -1.6 173,258 + SMa0308 0.20 -0.4 173,400 + SMa0308 0.35 +0.2 173,401 - SMa0308 0.35 -0.0 173,485 + SMa0308 0.44 +1.7 173,485 + SMa0308 0.44 -0.5 173,486 - SMa0308 0.44 +0.5 173,486 - SMa0308 0.44 -0.1 173,551 - SMa0308 0.51 -0.2 173,660 + SMa0308 0.62 -0.1 173,660 + SMa0308 0.62 -0.6 173,661 - SMa0308 0.62 -1.5 173,732 + SMa0308 0.70 -0.2 173,732 + SMa0308 0.70 -0.3 173,743 + SMa0308 0.71 -0.0 173,743 + SMa0308 0.71 +0.3 173,743 + SMa0308 0.71 -0.2 173,744 - SMa0308 0.71 +0.2 173,744 - SMa0308 0.71 +0.1 173,744 - SMa0308 0.71 +0.3 173,794 - SMa0308 0.76 -0.3 173,821 + SMa0308 0.79 -0.3 173,927 + +0.7 173,948 - +0.0 173,994 - +0.2
Or see this region's nucleotide sequence