Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20627 and SM_b20628 overlap by 4 nucleotides SM_b20628 and SM_b20629 are separated by 85 nucleotides SM_b20629 and SM_b20630 are separated by 74 nucleotides SM_b20630 and SM_b20631 are separated by 12 nucleotides
SM_b20627: SM_b20627 - hypothetical protein, at 1,647,906 to 1,648,214
_b20627
SM_b20628: SM_b20628 - hypothetical protein, at 1,648,211 to 1,648,480
_b20628
SM_b20629: SM_b20629 - hypothetical protein, at 1,648,566 to 1,648,844
_b20629
SM_b20630: SM_b20630 - sugar uptake ABC transporter ATP-binding protein, at 1,648,919 to 1,650,004
_b20630
SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939
_b20631
Position (kb)
1648
1649
1650
1651 Strain fitness (log2 ratio)
-1
0
1 at 1648.001 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.040 kb on - strand, within SM_b20627 at 1648.315 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.360 kb on - strand, within SM_b20628 at 1648.368 kb on - strand, within SM_b20628 at 1648.437 kb on - strand at 1648.437 kb on - strand, within SM_b20628 at 1648.437 kb on - strand, within SM_b20628 at 1648.462 kb on + strand at 1648.462 kb on + strand at 1648.463 kb on - strand at 1648.481 kb on - strand at 1648.481 kb on - strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.600 kb on + strand, within SM_b20629 at 1648.622 kb on + strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.763 kb on + strand, within SM_b20629 at 1648.808 kb on + strand, within SM_b20629 at 1649.058 kb on + strand, within SM_b20630 at 1649.058 kb on + strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.083 kb on - strand, within SM_b20630 at 1649.154 kb on - strand, within SM_b20630 at 1649.323 kb on - strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630 at 1649.719 kb on + strand, within SM_b20630 at 1649.719 kb on + strand, within SM_b20630 at 1649.736 kb on + strand, within SM_b20630 at 1649.737 kb on - strand, within SM_b20630 at 1649.950 kb on - strand at 1649.960 kb on + strand at 1649.961 kb on - strand at 1650.019 kb on - strand at 1650.019 kb on - strand at 1650.019 kb on - strand at 1650.078 kb on + strand at 1650.078 kb on + strand at 1650.130 kb on - strand at 1650.292 kb on - strand, within SM_b20631 at 1650.292 kb on - strand, within SM_b20631 at 1650.292 kb on - strand, within SM_b20631 at 1650.355 kb on - strand, within SM_b20631 at 1650.355 kb on - strand, within SM_b20631 at 1650.467 kb on - strand, within SM_b20631 at 1650.579 kb on + strand, within SM_b20631 at 1650.580 kb on - strand, within SM_b20631 at 1650.684 kb on + strand, within SM_b20631 at 1650.684 kb on + strand, within SM_b20631 at 1650.684 kb on + strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.690 kb on + strand, within SM_b20631 at 1650.690 kb on + strand, within SM_b20631 at 1650.691 kb on - strand, within SM_b20631 at 1650.691 kb on - strand, within SM_b20631 at 1650.691 kb on - strand, within SM_b20631 at 1650.721 kb on + strand, within SM_b20631 at 1650.843 kb on + strand, within SM_b20631 at 1650.844 kb on - strand, within SM_b20631 at 1650.945 kb on + strand, within SM_b20631 at 1650.946 kb on - strand, within SM_b20631 at 1650.969 kb on + strand, within SM_b20631 at 1650.969 kb on + strand, within SM_b20631 at 1650.970 kb on - strand, within SM_b20631 at 1650.972 kb on + strand, within SM_b20631
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,648,001 - SM_b20627 0.31 +0.7 1,648,009 - SM_b20627 0.33 -0.3 1,648,009 - SM_b20627 0.33 +0.1 1,648,009 - SM_b20627 0.33 -0.3 1,648,013 - SM_b20627 0.35 -0.1 1,648,013 - SM_b20627 0.35 -0.2 1,648,040 - SM_b20627 0.43 +0.1 1,648,315 + SM_b20628 0.39 -0.8 1,648,359 + SM_b20628 0.55 +0.3 1,648,359 + SM_b20628 0.55 +0.2 1,648,359 + SM_b20628 0.55 +1.7 1,648,360 - SM_b20628 0.55 +0.5 1,648,368 - SM_b20628 0.58 +0.5 1,648,437 - +0.7 1,648,437 - SM_b20628 0.84 -0.9 1,648,437 - SM_b20628 0.84 +1.2 1,648,462 + +0.2 1,648,462 + -0.4 1,648,463 - -0.3 1,648,481 - +0.1 1,648,481 - -0.3 1,648,505 + +0.1 1,648,505 + +0.0 1,648,505 + +0.7 1,648,600 + SM_b20629 0.12 +0.0 1,648,622 + SM_b20629 0.20 +0.1 1,648,623 - SM_b20629 0.20 +0.2 1,648,623 - SM_b20629 0.20 +1.0 1,648,746 + SM_b20629 0.65 -0.0 1,648,746 + SM_b20629 0.65 -0.3 1,648,763 + SM_b20629 0.71 -0.7 1,648,808 + SM_b20629 0.87 -0.0 1,649,058 + SM_b20630 0.13 +0.1 1,649,058 + SM_b20630 0.13 +1.1 1,649,059 - SM_b20630 0.13 +0.2 1,649,059 - SM_b20630 0.13 -0.1 1,649,083 - SM_b20630 0.15 +0.0 1,649,154 - SM_b20630 0.22 +0.5 1,649,323 - SM_b20630 0.37 +0.1 1,649,421 + SM_b20630 0.46 +0.0 1,649,421 + SM_b20630 0.46 -0.1 1,649,719 + SM_b20630 0.74 -0.1 1,649,719 + SM_b20630 0.74 -0.0 1,649,736 + SM_b20630 0.75 +0.6 1,649,737 - SM_b20630 0.75 +1.1 1,649,950 - +0.1 1,649,960 + +0.0 1,649,961 - +0.6 1,650,019 - +0.1 1,650,019 - -1.0 1,650,019 - -0.8 1,650,078 + +0.2 1,650,078 + -0.5 1,650,130 - -0.1 1,650,292 - SM_b20631 0.14 -0.0 1,650,292 - SM_b20631 0.14 -0.3 1,650,292 - SM_b20631 0.14 -0.5 1,650,355 - SM_b20631 0.18 -0.1 1,650,355 - SM_b20631 0.18 -0.1 1,650,467 - SM_b20631 0.23 -0.5 1,650,579 + SM_b20631 0.29 +0.3 1,650,580 - SM_b20631 0.29 -0.0 1,650,684 + SM_b20631 0.35 -0.1 1,650,684 + SM_b20631 0.35 -1.1 1,650,684 + SM_b20631 0.35 -1.3 1,650,685 - SM_b20631 0.35 +0.3 1,650,685 - SM_b20631 0.35 -0.1 1,650,685 - SM_b20631 0.35 +0.0 1,650,685 - SM_b20631 0.35 -0.2 1,650,685 - SM_b20631 0.35 -0.0 1,650,685 - SM_b20631 0.35 -0.0 1,650,685 - SM_b20631 0.35 +0.1 1,650,685 - SM_b20631 0.35 +1.7 1,650,688 + SM_b20631 0.35 +0.5 1,650,688 + SM_b20631 0.35 -1.0 1,650,688 + SM_b20631 0.35 +0.4 1,650,688 + SM_b20631 0.35 +0.7 1,650,688 + SM_b20631 0.35 +0.1 1,650,689 - SM_b20631 0.35 +0.1 1,650,689 - SM_b20631 0.35 -1.3 1,650,689 - SM_b20631 0.35 +1.6 1,650,689 - SM_b20631 0.35 +0.6 1,650,689 - SM_b20631 0.35 -0.1 1,650,689 - SM_b20631 0.35 -0.0 1,650,689 - SM_b20631 0.35 +0.2 1,650,690 + SM_b20631 0.35 +0.3 1,650,690 + SM_b20631 0.35 -0.0 1,650,691 - SM_b20631 0.35 +0.0 1,650,691 - SM_b20631 0.35 +0.6 1,650,691 - SM_b20631 0.35 -0.2 1,650,721 + SM_b20631 0.37 +0.5 1,650,843 + SM_b20631 0.43 +0.1 1,650,844 - SM_b20631 0.43 -0.9 1,650,945 + SM_b20631 0.48 +1.0 1,650,946 - SM_b20631 0.48 -0.3 1,650,969 + SM_b20631 0.50 -0.3 1,650,969 + SM_b20631 0.50 -0.4 1,650,970 - SM_b20631 0.50 +1.0 1,650,972 + SM_b20631 0.50 +1.7
Or see this region's nucleotide sequence