Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20630

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20627 and SM_b20628 overlap by 4 nucleotidesSM_b20628 and SM_b20629 are separated by 85 nucleotidesSM_b20629 and SM_b20630 are separated by 74 nucleotidesSM_b20630 and SM_b20631 are separated by 12 nucleotides SM_b20627: SM_b20627 - hypothetical protein, at 1,647,906 to 1,648,214 _b20627 SM_b20628: SM_b20628 - hypothetical protein, at 1,648,211 to 1,648,480 _b20628 SM_b20629: SM_b20629 - hypothetical protein, at 1,648,566 to 1,648,844 _b20629 SM_b20630: SM_b20630 - sugar uptake ABC transporter ATP-binding protein, at 1,648,919 to 1,650,004 _b20630 SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939 _b20631 Position (kb) 1648 1649 1650 1651Strain fitness (log2 ratio) -1 0 1at 1648.001 kb on - strand, within SM_b20627at 1648.009 kb on - strand, within SM_b20627at 1648.009 kb on - strand, within SM_b20627at 1648.009 kb on - strand, within SM_b20627at 1648.013 kb on - strand, within SM_b20627at 1648.013 kb on - strand, within SM_b20627at 1648.040 kb on - strand, within SM_b20627at 1648.315 kb on + strand, within SM_b20628at 1648.359 kb on + strand, within SM_b20628at 1648.359 kb on + strand, within SM_b20628at 1648.359 kb on + strand, within SM_b20628at 1648.360 kb on - strand, within SM_b20628at 1648.368 kb on - strand, within SM_b20628at 1648.437 kb on - strandat 1648.437 kb on - strand, within SM_b20628at 1648.437 kb on - strand, within SM_b20628at 1648.462 kb on + strandat 1648.462 kb on + strandat 1648.463 kb on - strandat 1648.481 kb on - strandat 1648.481 kb on - strandat 1648.505 kb on + strandat 1648.505 kb on + strandat 1648.505 kb on + strandat 1648.600 kb on + strand, within SM_b20629at 1648.622 kb on + strand, within SM_b20629at 1648.623 kb on - strand, within SM_b20629at 1648.623 kb on - strand, within SM_b20629at 1648.746 kb on + strand, within SM_b20629at 1648.746 kb on + strand, within SM_b20629at 1648.763 kb on + strand, within SM_b20629at 1648.808 kb on + strand, within SM_b20629at 1649.058 kb on + strand, within SM_b20630at 1649.058 kb on + strand, within SM_b20630at 1649.059 kb on - strand, within SM_b20630at 1649.059 kb on - strand, within SM_b20630at 1649.083 kb on - strand, within SM_b20630at 1649.154 kb on - strand, within SM_b20630at 1649.323 kb on - strand, within SM_b20630at 1649.421 kb on + strand, within SM_b20630at 1649.421 kb on + strand, within SM_b20630at 1649.719 kb on + strand, within SM_b20630at 1649.719 kb on + strand, within SM_b20630at 1649.736 kb on + strand, within SM_b20630at 1649.737 kb on - strand, within SM_b20630at 1649.950 kb on - strandat 1649.960 kb on + strandat 1649.961 kb on - strandat 1650.019 kb on - strandat 1650.019 kb on - strandat 1650.019 kb on - strandat 1650.078 kb on + strandat 1650.078 kb on + strandat 1650.130 kb on - strandat 1650.292 kb on - strand, within SM_b20631at 1650.292 kb on - strand, within SM_b20631at 1650.292 kb on - strand, within SM_b20631at 1650.355 kb on - strand, within SM_b20631at 1650.355 kb on - strand, within SM_b20631at 1650.467 kb on - strand, within SM_b20631at 1650.579 kb on + strand, within SM_b20631at 1650.580 kb on - strand, within SM_b20631at 1650.684 kb on + strand, within SM_b20631at 1650.684 kb on + strand, within SM_b20631at 1650.684 kb on + strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.690 kb on + strand, within SM_b20631at 1650.690 kb on + strand, within SM_b20631at 1650.691 kb on - strand, within SM_b20631at 1650.691 kb on - strand, within SM_b20631at 1650.691 kb on - strand, within SM_b20631at 1650.721 kb on + strand, within SM_b20631at 1650.843 kb on + strand, within SM_b20631at 1650.844 kb on - strand, within SM_b20631at 1650.945 kb on + strand, within SM_b20631at 1650.946 kb on - strand, within SM_b20631at 1650.969 kb on + strand, within SM_b20631at 1650.969 kb on + strand, within SM_b20631at 1650.970 kb on - strand, within SM_b20631at 1650.972 kb on + strand, within SM_b20631

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,648,001 - SM_b20627 0.31 +0.7
1,648,009 - SM_b20627 0.33 -0.3
1,648,009 - SM_b20627 0.33 +0.1
1,648,009 - SM_b20627 0.33 -0.3
1,648,013 - SM_b20627 0.35 -0.1
1,648,013 - SM_b20627 0.35 -0.2
1,648,040 - SM_b20627 0.43 +0.1
1,648,315 + SM_b20628 0.39 -0.8
1,648,359 + SM_b20628 0.55 +0.3
1,648,359 + SM_b20628 0.55 +0.2
1,648,359 + SM_b20628 0.55 +1.7
1,648,360 - SM_b20628 0.55 +0.5
1,648,368 - SM_b20628 0.58 +0.5
1,648,437 - +0.7
1,648,437 - SM_b20628 0.84 -0.9
1,648,437 - SM_b20628 0.84 +1.2
1,648,462 + +0.2
1,648,462 + -0.4
1,648,463 - -0.3
1,648,481 - +0.1
1,648,481 - -0.3
1,648,505 + +0.1
1,648,505 + +0.0
1,648,505 + +0.7
1,648,600 + SM_b20629 0.12 +0.0
1,648,622 + SM_b20629 0.20 +0.1
1,648,623 - SM_b20629 0.20 +0.2
1,648,623 - SM_b20629 0.20 +1.0
1,648,746 + SM_b20629 0.65 -0.0
1,648,746 + SM_b20629 0.65 -0.3
1,648,763 + SM_b20629 0.71 -0.7
1,648,808 + SM_b20629 0.87 -0.0
1,649,058 + SM_b20630 0.13 +0.1
1,649,058 + SM_b20630 0.13 +1.1
1,649,059 - SM_b20630 0.13 +0.2
1,649,059 - SM_b20630 0.13 -0.1
1,649,083 - SM_b20630 0.15 +0.0
1,649,154 - SM_b20630 0.22 +0.5
1,649,323 - SM_b20630 0.37 +0.1
1,649,421 + SM_b20630 0.46 +0.0
1,649,421 + SM_b20630 0.46 -0.1
1,649,719 + SM_b20630 0.74 -0.1
1,649,719 + SM_b20630 0.74 -0.0
1,649,736 + SM_b20630 0.75 +0.6
1,649,737 - SM_b20630 0.75 +1.1
1,649,950 - +0.1
1,649,960 + +0.0
1,649,961 - +0.6
1,650,019 - +0.1
1,650,019 - -1.0
1,650,019 - -0.8
1,650,078 + +0.2
1,650,078 + -0.5
1,650,130 - -0.1
1,650,292 - SM_b20631 0.14 -0.0
1,650,292 - SM_b20631 0.14 -0.3
1,650,292 - SM_b20631 0.14 -0.5
1,650,355 - SM_b20631 0.18 -0.1
1,650,355 - SM_b20631 0.18 -0.1
1,650,467 - SM_b20631 0.23 -0.5
1,650,579 + SM_b20631 0.29 +0.3
1,650,580 - SM_b20631 0.29 -0.0
1,650,684 + SM_b20631 0.35 -0.1
1,650,684 + SM_b20631 0.35 -1.1
1,650,684 + SM_b20631 0.35 -1.3
1,650,685 - SM_b20631 0.35 +0.3
1,650,685 - SM_b20631 0.35 -0.1
1,650,685 - SM_b20631 0.35 +0.0
1,650,685 - SM_b20631 0.35 -0.2
1,650,685 - SM_b20631 0.35 -0.0
1,650,685 - SM_b20631 0.35 -0.0
1,650,685 - SM_b20631 0.35 +0.1
1,650,685 - SM_b20631 0.35 +1.7
1,650,688 + SM_b20631 0.35 +0.5
1,650,688 + SM_b20631 0.35 -1.0
1,650,688 + SM_b20631 0.35 +0.4
1,650,688 + SM_b20631 0.35 +0.7
1,650,688 + SM_b20631 0.35 +0.1
1,650,689 - SM_b20631 0.35 +0.1
1,650,689 - SM_b20631 0.35 -1.3
1,650,689 - SM_b20631 0.35 +1.6
1,650,689 - SM_b20631 0.35 +0.6
1,650,689 - SM_b20631 0.35 -0.1
1,650,689 - SM_b20631 0.35 -0.0
1,650,689 - SM_b20631 0.35 +0.2
1,650,690 + SM_b20631 0.35 +0.3
1,650,690 + SM_b20631 0.35 -0.0
1,650,691 - SM_b20631 0.35 +0.0
1,650,691 - SM_b20631 0.35 +0.6
1,650,691 - SM_b20631 0.35 -0.2
1,650,721 + SM_b20631 0.37 +0.5
1,650,843 + SM_b20631 0.43 +0.1
1,650,844 - SM_b20631 0.43 -0.9
1,650,945 + SM_b20631 0.48 +1.0
1,650,946 - SM_b20631 0.48 -0.3
1,650,969 + SM_b20631 0.50 -0.3
1,650,969 + SM_b20631 0.50 -0.4
1,650,970 - SM_b20631 0.50 +1.0
1,650,972 + SM_b20631 0.50 +1.7

Or see this region's nucleotide sequence