Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20057 and SM_b20058 overlap by 4 nucleotides SM_b20058 and SM_b20059 are separated by 3 nucleotides SM_b20059 and SM_b20060 are separated by 91 nucleotides
SM_b20057: SM_b20057 - ABC transporter permease, at 67,708 to 68,751
_b20057
SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548
_b20058
SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331
_b20059
SM_b20060: SM_b20060 - ISRm5 transposase, at 70,423 to 71,619
_b20060
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1 at 68.723 kb on + strand at 69.594 kb on + strand at 69.595 kb on - strand at 69.857 kb on - strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 70.096 kb on - strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 68,723 + -0.7 69,594 + -2.2 69,595 - -0.5 69,857 - SM_b20059 0.39 -0.1 69,897 + SM_b20059 0.44 +1.1 69,897 + SM_b20059 0.44 -0.2 69,898 - SM_b20059 0.44 -0.6 69,898 - SM_b20059 0.44 -0.2 69,898 - SM_b20059 0.44 -0.9 70,096 - SM_b20059 0.70 -1.4 70,210 + SM_b20059 0.84 -0.6 70,210 + SM_b20059 0.84 -0.4 70,210 + SM_b20059 0.84 -0.6 70,330 - -0.1
Or see this region's nucleotide sequence