Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0803 and SMa0805 are separated by 81 nucleotides SMa0805 and SMa0806 are separated by 359 nucleotides
SMa0803: SMa0803 - ABC transporter ATP-binding protein, at 438,638 to 439,717
SMa0803
SMa0805: SMa0805 - GabD4 succinate-semialdehyde dehdyrogenase, at 439,799 to 441,271
SMa0805
SMa0806: SMa0806 - SyrB-like regulator, at 441,631 to 442,086
SMa0806
Position (kb) 439
440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.828 kb on + strand, within SMa0803 at 438.828 kb on + strand, within SMa0803 at 438.829 kb on - strand, within SMa0803 at 438.829 kb on - strand, within SMa0803 at 438.872 kb on - strand, within SMa0803 at 439.031 kb on - strand, within SMa0803 at 439.092 kb on - strand, within SMa0803 at 439.092 kb on - strand, within SMa0803 at 439.208 kb on + strand, within SMa0803 at 439.208 kb on + strand, within SMa0803 at 439.305 kb on + strand, within SMa0803 at 439.305 kb on + strand, within SMa0803 at 439.308 kb on - strand, within SMa0803 at 439.382 kb on - strand, within SMa0803 at 439.481 kb on - strand, within SMa0803 at 439.481 kb on - strand, within SMa0803 at 439.481 kb on - strand, within SMa0803 at 439.487 kb on - strand, within SMa0803 at 439.487 kb on - strand, within SMa0803 at 439.728 kb on - strand at 439.728 kb on - strand at 439.794 kb on + strand at 439.794 kb on + strand at 439.795 kb on - strand at 439.795 kb on - strand at 440.063 kb on + strand, within SMa0805 at 440.063 kb on + strand, within SMa0805 at 440.064 kb on - strand, within SMa0805 at 441.121 kb on - strand, within SMa0805 at 441.145 kb on + strand at 441.145 kb on + strand at 441.169 kb on - strand at 441.221 kb on + strand at 441.222 kb on - strand at 441.236 kb on + strand at 441.252 kb on - strand at 441.307 kb on - strand at 441.314 kb on - strand at 441.360 kb on + strand at 441.360 kb on + strand at 441.360 kb on + strand at 441.361 kb on - strand at 441.504 kb on - strand at 441.504 kb on - strand at 441.614 kb on + strand at 441.789 kb on + strand, within SMa0806 at 441.789 kb on + strand, within SMa0806 at 441.789 kb on + strand, within SMa0806 at 441.790 kb on - strand, within SMa0806 at 441.879 kb on + strand, within SMa0806 at 441.882 kb on - strand, within SMa0806 at 441.918 kb on + strand, within SMa0806 at 441.952 kb on - strand, within SMa0806 at 442.252 kb on + strand at 442.252 kb on + strand at 442.254 kb on + strand at 442.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 438,828 + SMa0803 0.18 -0.5 438,828 + SMa0803 0.18 -0.3 438,829 - SMa0803 0.18 +1.9 438,829 - SMa0803 0.18 +0.2 438,872 - SMa0803 0.22 +0.5 439,031 - SMa0803 0.36 +0.5 439,092 - SMa0803 0.42 +0.3 439,092 - SMa0803 0.42 -0.0 439,208 + SMa0803 0.53 +0.9 439,208 + SMa0803 0.53 +2.1 439,305 + SMa0803 0.62 +0.2 439,305 + SMa0803 0.62 -0.2 439,308 - SMa0803 0.62 +0.6 439,382 - SMa0803 0.69 +0.2 439,481 - SMa0803 0.78 -0.0 439,481 - SMa0803 0.78 +0.1 439,481 - SMa0803 0.78 +0.6 439,487 - SMa0803 0.79 +0.4 439,487 - SMa0803 0.79 +0.4 439,728 - +0.7 439,728 - -0.9 439,794 + -0.2 439,794 + +0.8 439,795 - -1.3 439,795 - -1.3 440,063 + SMa0805 0.18 -0.8 440,063 + SMa0805 0.18 -0.7 440,064 - SMa0805 0.18 -0.1 441,121 - SMa0805 0.90 -3.0 441,145 + -0.5 441,145 + -0.2 441,169 - -0.1 441,221 + +0.2 441,222 - +1.0 441,236 + -0.1 441,252 - +1.3 441,307 - -0.1 441,314 - +1.9 441,360 + +0.3 441,360 + -0.3 441,360 + -0.2 441,361 - -0.9 441,504 - +0.0 441,504 - -1.4 441,614 + -0.0 441,789 + SMa0806 0.35 +0.5 441,789 + SMa0806 0.35 +0.6 441,789 + SMa0806 0.35 -0.9 441,790 - SMa0806 0.35 -0.1 441,879 + SMa0806 0.54 +0.5 441,882 - SMa0806 0.55 -1.8 441,918 + SMa0806 0.63 +0.9 441,952 - SMa0806 0.70 -0.6 442,252 + -0.1 442,252 + -0.3 442,254 + -0.9 442,255 - -0.7
Or see this region's nucleotide sequence