Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0772 and SMa0773 are separated by 387 nucleotides SMa0773 and SMa0774 are separated by 6 nucleotides
SMa0772: SMa0772 - NodL Nod factor acetyltransferase, at 418,345 to 418,896
SMa0772
SMa0773: SMa0773 - NoeA host specific nodulation protein, at 419,284 to 420,714
SMa0773
SMa0774: SMa0774 - NoeB host specific nodulation protein, at 420,721 to 422,382
SMa0774
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.292 kb on - strand at 418.292 kb on - strand at 418.455 kb on + strand, within SMa0772 at 418.456 kb on - strand, within SMa0772 at 418.559 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.593 kb on + strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.941 kb on - strand at 419.064 kb on - strand at 419.102 kb on + strand at 419.102 kb on + strand at 419.103 kb on - strand at 419.133 kb on - strand at 419.151 kb on + strand at 419.151 kb on + strand at 419.152 kb on - strand at 419.240 kb on + strand at 419.447 kb on + strand, within SMa0773 at 419.530 kb on - strand, within SMa0773 at 419.680 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.770 kb on - strand, within SMa0773 at 419.962 kb on - strand, within SMa0773 at 419.981 kb on + strand, within SMa0773 at 419.982 kb on - strand, within SMa0773 at 420.106 kb on + strand, within SMa0773 at 420.125 kb on - strand, within SMa0773 at 420.158 kb on - strand, within SMa0773 at 420.213 kb on + strand, within SMa0773 at 420.237 kb on - strand, within SMa0773 at 420.666 kb on - strand at 420.668 kb on + strand at 420.668 kb on + strand at 420.669 kb on - strand at 420.744 kb on - strand at 420.744 kb on - strand at 420.755 kb on + strand at 420.755 kb on + strand at 420.796 kb on + strand at 420.796 kb on + strand at 420.797 kb on - strand at 420.799 kb on - strand at 421.040 kb on + strand, within SMa0774 at 421.041 kb on - strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.050 kb on + strand, within SMa0774 at 421.084 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.144 kb on - strand, within SMa0774 at 421.183 kb on + strand, within SMa0774 at 421.232 kb on + strand, within SMa0774 at 421.520 kb on + strand, within SMa0774 at 421.713 kb on + strand, within SMa0774
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 418,292 - +0.9 418,292 - -0.3 418,455 + SMa0772 0.20 +0.0 418,456 - SMa0772 0.20 +0.1 418,559 - SMa0772 0.39 -0.1 418,592 - SMa0772 0.45 -0.1 418,592 - SMa0772 0.45 +0.1 418,592 - SMa0772 0.45 -0.7 418,593 + SMa0772 0.45 -0.1 418,676 - SMa0772 0.60 +1.9 418,676 - SMa0772 0.60 +0.3 418,941 - +0.2 419,064 - +0.4 419,102 + -0.8 419,102 + -0.8 419,103 - -0.1 419,133 - +0.2 419,151 + -0.9 419,151 + -0.0 419,152 - -0.9 419,240 + -1.3 419,447 + SMa0773 0.11 +0.2 419,530 - SMa0773 0.17 -0.6 419,680 + SMa0773 0.28 +0.2 419,769 + SMa0773 0.34 +1.9 419,769 + SMa0773 0.34 +0.2 419,770 - SMa0773 0.34 -0.9 419,962 - SMa0773 0.47 -0.9 419,981 + SMa0773 0.49 -0.4 419,982 - SMa0773 0.49 -0.2 420,106 + SMa0773 0.57 -0.5 420,125 - SMa0773 0.59 +0.9 420,158 - SMa0773 0.61 -0.0 420,213 + SMa0773 0.65 +0.2 420,237 - SMa0773 0.67 -1.1 420,666 - -1.0 420,668 + -2.1 420,668 + -0.7 420,669 - -1.5 420,744 - +1.3 420,744 - +1.9 420,755 + -0.1 420,755 + -1.7 420,796 + +0.9 420,796 + -0.1 420,797 - -0.5 420,799 - +0.5 421,040 + SMa0774 0.19 -1.1 421,041 - SMa0774 0.19 -0.4 421,044 + SMa0774 0.19 +0.3 421,044 + SMa0774 0.19 +0.9 421,050 + SMa0774 0.20 -0.7 421,084 - SMa0774 0.22 +0.9 421,120 - SMa0774 0.24 +0.9 421,120 - SMa0774 0.24 +2.4 421,144 - SMa0774 0.25 -0.9 421,183 + SMa0774 0.28 +0.7 421,232 + SMa0774 0.31 +0.9 421,520 + SMa0774 0.48 +0.3 421,713 + SMa0774 0.60 +0.9
Or see this region's nucleotide sequence