Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13295

Experiment: cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13290 and BBR_RS13295 are separated by 66 nucleotidesBBR_RS13295 and BBR_RS13300 overlap by 17 nucleotides BBR_RS13290: BBR_RS13290 - Zn-dependent oxidoreductase, at 757,551 to 758,543 _RS13290 BBR_RS13295: BBR_RS13295 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 758,610 to 759,110 _RS13295 BBR_RS13300: BBR_RS13300 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 759,094 to 760,272 _RS13300 Position (kb) 758 759 760Strain fitness (log2 ratio) -3 -2 -1 0 1at 757.612 kb on - strandat 757.626 kb on + strandat 757.634 kb on - strandat 757.664 kb on + strand, within BBR_RS13290at 757.688 kb on + strand, within BBR_RS13290at 757.693 kb on + strand, within BBR_RS13290at 757.696 kb on - strand, within BBR_RS13290at 757.698 kb on + strand, within BBR_RS13290at 757.698 kb on + strand, within BBR_RS13290at 757.698 kb on + strand, within BBR_RS13290at 757.698 kb on + strand, within BBR_RS13290at 757.705 kb on + strand, within BBR_RS13290at 757.706 kb on - strand, within BBR_RS13290at 757.711 kb on - strand, within BBR_RS13290at 757.713 kb on - strand, within BBR_RS13290at 757.727 kb on + strand, within BBR_RS13290at 757.781 kb on + strand, within BBR_RS13290at 757.815 kb on + strand, within BBR_RS13290at 757.823 kb on - strand, within BBR_RS13290at 757.825 kb on - strand, within BBR_RS13290at 757.828 kb on - strand, within BBR_RS13290at 757.842 kb on - strand, within BBR_RS13290at 757.851 kb on - strand, within BBR_RS13290at 757.855 kb on + strand, within BBR_RS13290at 757.863 kb on - strand, within BBR_RS13290at 757.964 kb on + strand, within BBR_RS13290at 757.964 kb on + strand, within BBR_RS13290at 757.964 kb on + strand, within BBR_RS13290at 757.995 kb on - strand, within BBR_RS13290at 758.007 kb on - strand, within BBR_RS13290at 758.029 kb on + strand, within BBR_RS13290at 758.029 kb on + strand, within BBR_RS13290at 758.054 kb on + strand, within BBR_RS13290at 758.062 kb on - strand, within BBR_RS13290at 758.073 kb on + strand, within BBR_RS13290at 758.073 kb on + strand, within BBR_RS13290at 758.090 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.123 kb on - strand, within BBR_RS13290at 758.123 kb on - strand, within BBR_RS13290at 758.125 kb on + strand, within BBR_RS13290at 758.139 kb on - strand, within BBR_RS13290at 758.160 kb on + strand, within BBR_RS13290at 758.161 kb on - strand, within BBR_RS13290at 758.168 kb on - strand, within BBR_RS13290at 758.224 kb on - strand, within BBR_RS13290at 758.236 kb on - strand, within BBR_RS13290at 758.329 kb on + strand, within BBR_RS13290at 758.336 kb on + strand, within BBR_RS13290at 758.337 kb on - strand, within BBR_RS13290at 758.351 kb on + strand, within BBR_RS13290at 758.372 kb on + strand, within BBR_RS13290at 758.372 kb on + strand, within BBR_RS13290at 758.380 kb on - strand, within BBR_RS13290at 758.380 kb on - strand, within BBR_RS13290at 758.457 kb on + strandat 758.545 kb on - strandat 758.559 kb on + strandat 758.566 kb on + strandat 758.566 kb on + strandat 758.574 kb on - strandat 758.574 kb on - strandat 759.413 kb on + strand, within BBR_RS13300at 759.498 kb on - strand, within BBR_RS13300at 759.595 kb on - strand, within BBR_RS13300

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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757,612 - +1.0
757,626 + -0.6
757,634 - +0.3
757,664 + BBR_RS13290 0.11 +0.8
757,688 + BBR_RS13290 0.14 +0.5
757,693 + BBR_RS13290 0.14 -0.8
757,696 - BBR_RS13290 0.15 +0.9
757,698 + BBR_RS13290 0.15 +0.7
757,698 + BBR_RS13290 0.15 +0.1
757,698 + BBR_RS13290 0.15 +0.9
757,698 + BBR_RS13290 0.15 -0.2
757,705 + BBR_RS13290 0.16 +0.1
757,706 - BBR_RS13290 0.16 +0.1
757,711 - BBR_RS13290 0.16 +1.2
757,713 - BBR_RS13290 0.16 +0.0
757,727 + BBR_RS13290 0.18 -0.8
757,781 + BBR_RS13290 0.23 +1.5
757,815 + BBR_RS13290 0.27 -1.0
757,823 - BBR_RS13290 0.27 +0.2
757,825 - BBR_RS13290 0.28 +1.4
757,828 - BBR_RS13290 0.28 -0.9
757,842 - BBR_RS13290 0.29 +0.1
757,851 - BBR_RS13290 0.30 +1.0
757,855 + BBR_RS13290 0.31 +0.0
757,863 - BBR_RS13290 0.31 -0.4
757,964 + BBR_RS13290 0.42 +0.9
757,964 + BBR_RS13290 0.42 +1.5
757,964 + BBR_RS13290 0.42 -0.8
757,995 - BBR_RS13290 0.45 -0.3
758,007 - BBR_RS13290 0.46 +0.3
758,029 + BBR_RS13290 0.48 +0.5
758,029 + BBR_RS13290 0.48 +0.8
758,054 + BBR_RS13290 0.51 +0.3
758,062 - BBR_RS13290 0.51 -0.0
758,073 + BBR_RS13290 0.53 +0.2
758,073 + BBR_RS13290 0.53 +1.0
758,090 + BBR_RS13290 0.54 +0.7
758,113 + BBR_RS13290 0.57 +0.7
758,113 + BBR_RS13290 0.57 -0.7
758,113 + BBR_RS13290 0.57 +0.4
758,113 + BBR_RS13290 0.57 +0.8
758,113 + BBR_RS13290 0.57 +0.6
758,121 - BBR_RS13290 0.57 +0.2
758,121 - BBR_RS13290 0.57 -1.1
758,121 - BBR_RS13290 0.57 -0.4
758,121 - BBR_RS13290 0.57 -0.1
758,123 - BBR_RS13290 0.58 -1.6
758,123 - BBR_RS13290 0.58 -1.7
758,125 + BBR_RS13290 0.58 +0.1
758,139 - BBR_RS13290 0.59 +0.2
758,160 + BBR_RS13290 0.61 +0.4
758,161 - BBR_RS13290 0.61 +0.0
758,168 - BBR_RS13290 0.62 -0.1
758,224 - BBR_RS13290 0.68 -0.4
758,236 - BBR_RS13290 0.69 +0.9
758,329 + BBR_RS13290 0.78 +0.1
758,336 + BBR_RS13290 0.79 -2.9
758,337 - BBR_RS13290 0.79 +0.6
758,351 + BBR_RS13290 0.81 -1.1
758,372 + BBR_RS13290 0.83 +0.2
758,372 + BBR_RS13290 0.83 +1.0
758,380 - BBR_RS13290 0.83 -2.6
758,380 - BBR_RS13290 0.83 +0.6
758,457 + +1.7
758,545 - -1.1
758,559 + +0.7
758,566 + -0.1
758,566 + +1.5
758,574 - +0.7
758,574 - -1.6
759,413 + BBR_RS13300 0.27 -1.2
759,498 - BBR_RS13300 0.34 +0.1
759,595 - BBR_RS13300 0.42 +1.5

Or see this region's nucleotide sequence