Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19865

Experiment: cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482
2,254,125	+		BBR_RS19860	0.51	-0.3
2,254,130	-		BBR_RS19860	0.52	-0.5
2,254,130	-		BBR_RS19860	0.52	+0.1
2,254,130	-		BBR_RS19860	0.52	+0.4
2,254,166	-		BBR_RS19860	0.54	+0.7
2,254,168	-		BBR_RS19860	0.55	-0.5
2,254,168	-		BBR_RS19860	0.55	+0.3
2,254,168	-		BBR_RS19860	0.55	+0.1
2,254,170	+		BBR_RS19860	0.55	-1.3
2,254,178	-		BBR_RS19860	0.55	-0.5
2,254,178	-		BBR_RS19860	0.55	+0.9
2,254,178	-		BBR_RS19860	0.55	-0.3
2,254,183	-		BBR_RS19860	0.56	-0.5
2,254,200	-		BBR_RS19860	0.57	-0.6
2,254,247	-		BBR_RS19860	0.61	-1.7
2,254,251	-		BBR_RS19860	0.61	-0.7
2,254,251	-		BBR_RS19860	0.61	+0.7
2,254,295	-		BBR_RS19860	0.64	-0.5
2,254,295	-		BBR_RS19860	0.64	+1.2
2,254,308	+		BBR_RS19860	0.65	+0.3
2,254,316	-		BBR_RS19860	0.66	+0.1
2,254,316	-		BBR_RS19860	0.66	+0.0
2,254,316	-		BBR_RS19860	0.66	-1.2
2,254,316	-		BBR_RS19860	0.66	+1.0
2,254,316	-		BBR_RS19860	0.66	+0.1
2,254,333	+		BBR_RS19860	0.67	+0.5
2,254,366	-		BBR_RS19860	0.70	-0.5
2,254,387	+		BBR_RS19860	0.71	+1.0
2,254,415	-		BBR_RS19860	0.73	+0.6
2,254,421	+		BBR_RS19860	0.74	-0.6
2,254,428	-		BBR_RS19860	0.74	+1.3
2,254,429	-		BBR_RS19860	0.74	-0.2
2,254,446	+		BBR_RS19860	0.76	+0.4
2,254,457	+		BBR_RS19860	0.77	-1.7
2,254,468	+		BBR_RS19860	0.77	+0.5
2,254,468	+		BBR_RS19860	0.77	+1.5
2,254,476	-		BBR_RS19860	0.78	+1.5
2,254,476	-		BBR_RS19860	0.78	-0.1
2,254,485	-		BBR_RS19860	0.79	-0.5
2,254,511	-		BBR_RS19860	0.81	+0.5
2,254,511	-		BBR_RS19860	0.81	-0.7
2,254,511	-		BBR_RS19860	0.81	-0.3
2,254,511	-		BBR_RS19860	0.81	+0.5
2,254,542	-		BBR_RS19860	0.83	+1.7
2,254,542	-		BBR_RS19860	0.83	-0.5
2,254,563	-		BBR_RS19860	0.85	-1.0
2,254,568	-		BBR_RS19860	0.85	-0.3
2,254,573	-		BBR_RS19860	0.85	+0.4
2,254,575	-		BBR_RS19860	0.85	+0.2
2,254,575	-		BBR_RS19860	0.85	+0.9
2,254,576	+		BBR_RS19860	0.86	+0.8
2,254,584	-		BBR_RS19860	0.86	-0.7
2,254,601	-		BBR_RS19860	0.87	-0.1
2,254,611	+		BBR_RS19860	0.88	-0.3
2,254,611	+		BBR_RS19860	0.88	-0.9
2,254,630	+		BBR_RS19860	0.90	+0.2
2,254,630	+		BBR_RS19860	0.90	-0.0
2,254,644	+				+0.7
2,254,647	-				-0.1
2,254,652	-				+0.1
2,254,652	-				+1.2
2,254,652	-				-0.5
2,254,668	+				+0.4
2,254,946	+				-0.3
2,254,954	-				-0.6
2,254,980	+				-1.3
2,254,995	+				+0.5
2,254,995	+				-0.5
2,254,995	+				+0.6
2,254,995	+				-1.7
2,254,995	+				-1.4
2,254,995	+				-0.8
2,254,995	+				-0.8
2,255,003	-				-0.4
2,255,003	-				+0.4
2,255,003	-				-0.0
2,255,003	-				-0.5
2,255,003	-				+0.7
2,255,003	-				-1.3
2,255,005	-				-0.8
2,255,077	+				+0.7
2,255,077	+				+0.4
2,255,095	+				-0.1
2,255,099	-				-0.6
2,255,101	+				-0.5
2,255,103	-				-0.1
2,255,109	+				+0.2
2,255,109	+				-0.2
2,255,109	+				-0.0
2,255,109	+				+0.8
2,255,109	+				+0.6
2,255,109	+				-1.0
2,255,111	+				-0.6
2,255,116	+				-0.3
2,255,116	+				-0.0
2,255,117	-				+0.8
2,255,117	-				+0.7
2,255,117	-				-1.0
2,255,117	-				+0.7
2,255,117	-				+0.6
2,255,117	-				-0.4
2,255,117	-				-0.1
2,255,117	-				+1.0
2,255,117	-				-1.7
2,255,119	-				+0.5
2,255,124	-				+0.4
2,255,136	+				-0.3
2,255,143	+		BBR_RS19865	0.10	+0.9
2,255,151	-		BBR_RS19865	0.13	+1.3
2,255,176	-		BBR_RS19865	0.23	+0.4
2,255,176	-		BBR_RS19865	0.23	+0.1
2,255,182	+		BBR_RS19865	0.26	-0.0
2,255,182	+		BBR_RS19865	0.26	-0.9
2,255,190	+		BBR_RS19865	0.29	+0.9
2,255,190	-		BBR_RS19865	0.29	+0.7
2,255,190	-		BBR_RS19865	0.29	-0.0
2,255,198	-		BBR_RS19865	0.32	-1.0
2,255,210	-		BBR_RS19865	0.37	+0.6
2,255,239	-		BBR_RS19865	0.49	+1.1
2,255,239	-		BBR_RS19865	0.49	-0.1
2,255,239	-		BBR_RS19865	0.49	+1.0
2,255,291	-		BBR_RS19865	0.69	+0.9
2,255,313	+		BBR_RS19865	0.78	+3.7
2,255,313	+		BBR_RS19865	0.78	-0.7
2,255,319	-		BBR_RS19865	0.81	+0.9
2,255,319	-		BBR_RS19865	0.81	-0.5
2,255,319	-		BBR_RS19865	0.81	-0.3
2,255,321	-		BBR_RS19865	0.82	+1.9
2,255,326	+		BBR_RS19865	0.84	-0.3
2,255,328	+		BBR_RS19865	0.84	-0.2
2,255,328	+		BBR_RS19865	0.84	+1.1
2,255,331	-		BBR_RS19865	0.86	+0.9
2,255,334	-		BBR_RS19865	0.87	+1.1
2,255,336	-		BBR_RS19865	0.88	+0.1
2,255,370	+				-0.8
2,255,370	+				-0.2
2,255,370	+				+0.2
2,255,370	+				+0.1
2,255,370	+				+0.5
2,255,370	+				-0.7
2,255,370	+				-0.9
2,255,370	+				+0.5
2,255,370	+				+0.6
2,255,370	+				-0.1
2,255,370	+				-0.9
2,255,370	+				-1.8
2,255,370	+				+0.4
2,255,378	-				-0.7
2,255,378	-				-0.9
2,255,378	-				+4.5
2,255,378	-				+0.5
2,255,378	-				-0.1
2,255,378	-				+0.4
2,255,378	-				+0.1
2,255,378	-				+0.7
2,255,378	-				+1.1
2,255,382	+				+1.1
2,255,412	+				-0.3
2,255,414	+				-0.0
2,255,432	+				+0.0
2,255,441	+				+0.4
2,255,446	+				-0.1
2,255,448	+				+0.0
2,255,449	-				-0.3
2,255,454	-				-0.3
2,255,454	-				+0.3
2,255,456	-				+0.3
2,255,464	-				-1.8
2,255,464	-				+0.6
2,255,468	+				-0.4
2,255,470	+				+0.1
2,255,476	-				+1.5
2,255,476	-				-0.4
2,255,476	-				+1.2
2,255,478	-				-0.9
2,255,484	-				+0.7
2,255,493	+				-0.4
2,255,517	-		BBR_RS21130	0.21	-0.2
2,255,526	-		BBR_RS21130	0.25	+0.2
2,255,543	-		BBR_RS21130	0.33	+0.7
2,255,552	-		BBR_RS21130	0.38	+0.3
2,255,552	-		BBR_RS21130	0.38	-2.3
2,255,563	+		BBR_RS21130	0.43	+0.4
2,255,563	+		BBR_RS21130	0.43	+0.3
2,255,563	+		BBR_RS21130	0.43	+1.6
2,255,563	+		BBR_RS21130	0.43	-0.3
2,255,563	+		BBR_RS21130	0.43	-0.2
2,255,563	+		BBR_RS21130	0.43	+1.1
2,255,563	+		BBR_RS21130	0.43	+1.0
2,255,563	+		BBR_RS21130	0.43	+0.2
2,255,563	+		BBR_RS21130	0.43	-0.2
2,255,563	+		BBR_RS21130	0.43	+0.1
2,255,563	+		BBR_RS21130	0.43	-0.1
2,255,563	+		BBR_RS21130	0.43	-0.2
2,255,563	+		BBR_RS21130	0.43	-0.5
2,255,565	+		BBR_RS21130	0.44	+0.3
2,255,571	-		BBR_RS21130	0.46	-0.9
2,255,571	-		BBR_RS21130	0.46	+0.4
2,255,571	-		BBR_RS21130	0.46	-0.3
2,255,571	-		BBR_RS21130	0.46	+0.8
2,255,571	-		BBR_RS21130	0.46	+0.4
2,255,587	+		BBR_RS21130	0.54	-0.1
2,255,595	+		BBR_RS21130	0.58	-0.3
2,255,603	-		BBR_RS21130	0.62	-0.5
2,255,622	+		BBR_RS21130	0.70	-0.0
2,255,622	+		BBR_RS21130	0.70	+0.7
2,255,622	+		BBR_RS21130	0.70	-0.1
2,255,622	+		BBR_RS21130	0.70	-0.3
2,255,622	+		BBR_RS21130	0.70	-0.8
2,255,622	+		BBR_RS21130	0.70	-1.0
2,255,622	+		BBR_RS21130	0.70	-0.0
2,255,622	+		BBR_RS21130	0.70	+1.2
2,255,630	-		BBR_RS21130	0.74	+1.4
2,255,630	-		BBR_RS21130	0.74	-1.1
2,255,630	-		BBR_RS21130	0.74	+0.4
2,255,630	-		BBR_RS21130	0.74	-1.0
2,255,630	-		BBR_RS21130	0.74	+0.2
2,255,630	-		BBR_RS21130	0.74	-0.7
2,255,630	-		BBR_RS21130	0.74	-0.7
2,255,630	-		BBR_RS21130	0.74	-1.3
2,255,644	+		BBR_RS21130	0.81	+0.3
2,255,644	+		BBR_RS21130	0.81	+0.5
2,255,662	-		BBR_RS21130	0.89	+0.3
2,255,670	-				-0.3
2,255,704	-				-0.3
2,255,740	-				-0.6
2,255,740	-				+0.1
2,255,740	-				-0.1
2,255,740	-				-0.0
2,255,757	+				-0.5
2,255,760	-				+0.2
2,255,760	-				+1.2
2,255,769	+				+0.3
2,255,769	+				+0.2
2,255,769	+				+0.3
2,255,769	+				+0.2
2,255,774	+				-0.9
2,255,779	+				-1.3
2,255,781	+				-0.3
2,255,804	+				-0.3
2,255,806	+				+0.4
2,255,843	-				-0.2
2,255,844	-				-0.5
2,255,846	+				-0.3
2,255,846	+				-2.2
2,255,846	+				-0.7
2,255,854	-				-0.2
2,255,854	-				-1.2
2,255,888	+				+1.2
2,255,898	+				-2.6
2,255,898	+				-1.8
2,255,898	+				+0.3
2,255,898	+				+0.2
2,255,898	+				+0.1
2,255,898	+				+0.1
2,255,898	+				+0.5
2,255,898	+				-0.0
2,255,898	+				-0.1
2,255,901	-				+0.6
2,255,901	-				-0.9
2,255,906	-				+0.0
2,255,906	-				+1.0
2,255,908	+				-0.0
2,255,908	+				+1.2
2,255,908	+				+0.6
2,255,908	+				+0.2
2,255,916	-				-0.4
2,255,916	-				+0.1
2,255,940	+				+0.7
2,255,940	+				-0.1
2,255,940	+				-0.7
2,255,940	+				+1.0
2,255,940	+				-1.4
2,255,940	+				+0.7
2,255,940	+				+0.3
2,255,940	+				+0.6
2,255,940	+				+0.2
2,255,940	+				+0.1
2,255,940	+				+0.6
2,255,948	-				-0.3
2,255,948	-				+0.0
2,255,948	-				-1.2
2,255,948	-				-0.3
2,255,948	-				-0.2
2,255,948	-				-0.5
2,255,948	-				+0.1
2,255,948	-				+0.2
2,255,948	-				+0.8
2,255,948	-				-0.5
2,255,948	-				+0.0
2,255,958	+				-0.2
2,255,960	+		BBR_RS19875	0.10	+0.8
2,255,977	-		BBR_RS19875	0.11	+0.0
2,255,987	-		BBR_RS19875	0.12	-0.2
2,256,015	-		BBR_RS19875	0.13	-0.2
2,256,021	-		BBR_RS19875	0.14	+0.9
2,256,021	-		BBR_RS19875	0.14	+0.7
2,256,029	-		BBR_RS19875	0.14	-0.2
2,256,042	+		BBR_RS19875	0.15	+0.3
2,256,042	+		BBR_RS19875	0.15	+1.0
2,256,042	-		BBR_RS19875	0.15	-0.4
2,256,044	+		BBR_RS19875	0.15	+0.5
2,256,044	+		BBR_RS19875	0.15	+1.0
2,256,047	-		BBR_RS19875	0.15	-1.1
2,256,049	-		BBR_RS19875	0.15	-1.2
2,256,049	-		BBR_RS19875	0.15	+0.0
2,256,050	-		BBR_RS19875	0.15	-0.2
2,256,050	-		BBR_RS19875	0.15	-0.1
2,256,050	-		BBR_RS19875	0.15	-1.5
2,256,050	-		BBR_RS19875	0.15	-0.1
2,256,064	+		BBR_RS19875	0.16	-0.0
2,256,064	+		BBR_RS19875	0.16	+0.9
2,256,064	+		BBR_RS19875	0.16	-0.5
2,256,072	-		BBR_RS19875	0.16	-0.1
2,256,096	+		BBR_RS19875	0.18	+0.6
2,256,101	+		BBR_RS19875	0.18	+0.7
2,256,101	+		BBR_RS19875	0.18	+0.1
2,256,106	+		BBR_RS19875	0.18	-0.8
2,256,106	+		BBR_RS19875	0.18	+0.6
2,256,106	+		BBR_RS19875	0.18	-0.2
2,256,109	+		BBR_RS19875	0.19	+0.1
2,256,116	-		BBR_RS19875	0.19	-0.1
2,256,116	-		BBR_RS19875	0.19	+0.9
2,256,116	-		BBR_RS19875	0.19	+0.7
2,256,126	-		BBR_RS19875	0.20	+0.9
2,256,132	+		BBR_RS19875	0.20	+0.1
2,256,132	+		BBR_RS19875	0.20	-1.4
2,256,132	+		BBR_RS19875	0.20	+0.1
2,256,165	+		BBR_RS19875	0.22	+1.0
2,256,165	+		BBR_RS19875	0.22	-0.3
2,256,165	+		BBR_RS19875	0.22	-0.4
2,256,165	+		BBR_RS19875	0.22	-1.4
2,256,165	+		BBR_RS19875	0.22	+0.4
2,256,165	-		BBR_RS19875	0.22	-0.3
2,256,166	+		BBR_RS19875	0.22	+0.3
2,256,173	-		BBR_RS19875	0.22	+0.0
2,256,173	-		BBR_RS19875	0.22	+0.4
2,256,173	-		BBR_RS19875	0.22	+1.7
2,256,173	-		BBR_RS19875	0.22	+0.8
2,256,174	-		BBR_RS19875	0.22	+0.4
2,256,176	+		BBR_RS19875	0.22	-0.8
2,256,177	+		BBR_RS19875	0.23	+1.0
2,256,183	+		BBR_RS19875	0.23	+0.1
2,256,207	+		BBR_RS19875	0.24	+0.7
2,256,209	-		BBR_RS19875	0.24	-0.8
2,256,212	+		BBR_RS19875	0.25	+1.0
2,256,215	-		BBR_RS19875	0.25	-0.1
2,256,215	-		BBR_RS19875	0.25	+0.0
2,256,215	-		BBR_RS19875	0.25	-0.2
2,256,215	-		BBR_RS19875	0.25	-1.9
2,256,215	-		BBR_RS19875	0.25	-1.4
2,256,226	+		BBR_RS19875	0.25	+0.4
2,256,226	-		BBR_RS19875	0.25	+0.5
2,256,226	-		BBR_RS19875	0.25	-0.5
2,256,257	+		BBR_RS19875	0.27	-0.3
2,256,259	+		BBR_RS19875	0.27	+0.3
2,256,259	+		BBR_RS19875	0.27	+0.0
2,256,259	+		BBR_RS19875	0.27	-1.6
2,256,267	-		BBR_RS19875	0.28	-0.4
2,256,267	-		BBR_RS19875	0.28	-0.1
2,256,267	-		BBR_RS19875	0.28	-0.4
2,256,267	-		BBR_RS19875	0.28	-2.8
2,256,267	-		BBR_RS19875	0.28	-1.8
2,256,267	-		BBR_RS19875	0.28	+0.2
2,256,269	+		BBR_RS19875	0.28	-0.1
2,256,295	+		BBR_RS19875	0.29	-0.3
2,256,311	-		BBR_RS19875	0.30	+1.8
2,256,312	+		BBR_RS19875	0.30	+1.0
2,256,312	-		BBR_RS19875	0.30	+0.1
2,256,312	-		BBR_RS19875	0.30	-1.1
2,256,318	+		BBR_RS19875	0.31	+2.7
2,256,320	-		BBR_RS19875	0.31	-0.0
2,256,320	-		BBR_RS19875	0.31	-0.2
2,256,327	-		BBR_RS19875	0.31	-0.0
2,256,327	-		BBR_RS19875	0.31	+0.7
2,256,340	+		BBR_RS19875	0.32	+0.5
2,256,345	+		BBR_RS19875	0.32	+0.1
2,256,350	+		BBR_RS19875	0.33	+0.4
2,256,350	+		BBR_RS19875	0.33	+0.9
2,256,350	+		BBR_RS19875	0.33	-0.7
2,256,353	-		BBR_RS19875	0.33	-2.0
2,256,358	-		BBR_RS19875	0.33	+0.3
2,256,358	-		BBR_RS19875	0.33	-1.7