Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17975

Experiment: cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482
1,817,154	-		BBR_RS17970	0.13	-3.8
1,817,162	-		BBR_RS17970	0.14	-4.3
1,817,167	+		BBR_RS17970	0.14	-1.4
1,817,168	-		BBR_RS17970	0.14	-2.0
1,817,168	-		BBR_RS17970	0.14	-1.7
1,817,188	-		BBR_RS17970	0.16	-3.0
1,817,206	+		BBR_RS17970	0.18	-2.4
1,817,214	-		BBR_RS17970	0.19	-1.3
1,817,214	-		BBR_RS17970	0.19	+0.0
1,817,224	-		BBR_RS17970	0.20	-1.8
1,817,236	+		BBR_RS17970	0.21	-2.7
1,817,244	-		BBR_RS17970	0.21	-1.7
1,817,244	-		BBR_RS17970	0.21	-4.7
1,817,244	-		BBR_RS17970	0.21	-3.7
1,817,263	+		BBR_RS17970	0.23	-2.7
1,817,284	+		BBR_RS17970	0.25	-3.0
1,817,285	+		BBR_RS17970	0.25	-1.4
1,817,287	-		BBR_RS17970	0.25	-3.1
1,817,292	-		BBR_RS17970	0.26	-2.4
1,817,402	+		BBR_RS17970	0.36	-3.1
1,817,410	-		BBR_RS17970	0.37	-1.8
1,817,412	+		BBR_RS17970	0.37	-2.5
1,817,412	+		BBR_RS17970	0.37	-0.6
1,817,424	+		BBR_RS17970	0.38	-0.9
1,817,431	+		BBR_RS17970	0.39	-1.2
1,817,431	+		BBR_RS17970	0.39	-2.9
1,817,442	-		BBR_RS17970	0.40	-1.8
1,817,469	+		BBR_RS17970	0.43	+0.1
1,817,477	-		BBR_RS17970	0.43	-2.2
1,817,489	+		BBR_RS17970	0.45	-0.5
1,817,537	-		BBR_RS17970	0.49	-1.6
1,817,539	+		BBR_RS17970	0.49	-1.1
1,817,541	+		BBR_RS17970	0.50	-2.2
1,817,547	-		BBR_RS17970	0.50	+0.0
1,817,551	+		BBR_RS17970	0.50	-2.0
1,817,553	+		BBR_RS17970	0.51	-3.1
1,817,594	+		BBR_RS17970	0.55	-2.6
1,817,594	+		BBR_RS17970	0.55	-2.3
1,817,599	+		BBR_RS17970	0.55	-2.0
1,817,604	+		BBR_RS17970	0.55	-2.1
1,817,610	+		BBR_RS17970	0.56	-3.0
1,817,610	+		BBR_RS17970	0.56	-2.3
1,817,626	-		BBR_RS17970	0.58	-1.0
1,817,640	-		BBR_RS17970	0.59	-2.7
1,817,641	+		BBR_RS17970	0.59	-0.7
1,817,651	+		BBR_RS17970	0.60	-1.4
1,817,659	-		BBR_RS17970	0.61	-1.7
1,817,659	-		BBR_RS17970	0.61	-2.2
1,817,682	+		BBR_RS17970	0.63	-1.1
1,817,682	-		BBR_RS17970	0.63	-1.2
1,817,682	-		BBR_RS17970	0.63	+0.6
1,817,685	+		BBR_RS17970	0.63	-1.8
1,817,685	+		BBR_RS17970	0.63	-2.8
1,817,689	-		BBR_RS17970	0.64	-3.3
1,817,693	-		BBR_RS17970	0.64	-1.9
1,817,703	-		BBR_RS17970	0.65	-2.8
1,817,719	+		BBR_RS17970	0.66	-1.9
1,817,732	+		BBR_RS17970	0.68	-0.8
1,817,732	+		BBR_RS17970	0.68	+0.1
1,817,732	+		BBR_RS17970	0.68	-1.1
1,817,732	+		BBR_RS17970	0.68	-0.7
1,817,732	+		BBR_RS17970	0.68	-2.4
1,817,734	+		BBR_RS17970	0.68	-2.8
1,817,734	+		BBR_RS17970	0.68	-2.2
1,817,740	-		BBR_RS17970	0.68	-1.1
1,817,740	-		BBR_RS17970	0.68	-2.9
1,817,742	-		BBR_RS17970	0.69	-1.1
1,817,742	-		BBR_RS17970	0.69	-1.4
1,817,804	+		BBR_RS17970	0.74	-3.1
1,817,804	+		BBR_RS17970	0.74	-2.6
1,817,804	+		BBR_RS17970	0.74	-1.7
1,817,842	+		BBR_RS17970	0.78	-3.8
1,817,878	+		BBR_RS17970	0.81	-1.4
1,817,878	+		BBR_RS17970	0.81	-2.5
1,817,878	+		BBR_RS17970	0.81	-1.5
1,817,886	-		BBR_RS17970	0.82	-3.9
1,817,886	-		BBR_RS17970	0.82	-0.3
1,817,886	-		BBR_RS17970	0.82	-3.2
1,817,886	-		BBR_RS17970	0.82	-1.3
1,817,886	-		BBR_RS17970	0.82	-1.7
1,817,886	-		BBR_RS17970	0.82	-1.6
1,817,886	-		BBR_RS17970	0.82	-1.5
1,817,928	+		BBR_RS17970	0.86	-0.3
1,817,935	-		BBR_RS17970	0.87	-2.3
1,817,948	+		BBR_RS17970	0.88	-1.0
1,817,956	-		BBR_RS17970	0.89	+0.5
1,817,957	+		BBR_RS17970	0.89	+0.3
1,817,965	+		BBR_RS17970	0.90	-1.2
1,818,107	+				-0.3
1,818,113	-				-0.2
1,818,113	-				+0.0
1,818,115	-				+0.4
1,818,129	-				+0.9
1,818,138	-				+1.3
1,818,153	-				+0.3
1,818,177	-				-0.1
1,818,186	+				+0.9
1,818,218	-		BBR_RS17975	0.14	+0.3
1,818,241	+		BBR_RS17975	0.19	+1.9
1,818,266	-		BBR_RS17975	0.24	+0.0
1,818,268	-		BBR_RS17975	0.24	-0.5
1,818,268	-		BBR_RS17975	0.24	+0.5
1,818,268	-		BBR_RS17975	0.24	+0.6
1,818,314	+		BBR_RS17975	0.34	-1.1
1,818,426	+		BBR_RS17975	0.58	-0.5
1,818,428	+		BBR_RS17975	0.58	-0.4
1,818,546	-		BBR_RS17975	0.83	+0.2
1,818,571	+		BBR_RS17975	0.88	-0.4
1,818,577	-		BBR_RS17975	0.89	-0.2
1,818,579	-				+1.0
1,818,607	+				-0.3
1,818,630	+				+0.8
1,818,638	-				+1.3
1,818,638	-				+1.1
1,818,638	-				-0.6
1,818,638	-				+0.2
1,818,731	+				-0.5
1,818,739	-				+0.6
1,818,750	+				+0.9
1,818,750	+				-0.5
1,818,774	-				-0.8
1,818,782	+				+0.3
1,818,791	-				-1.3
1,818,797	+				+0.7
1,818,854	+		BBR_RS17980	0.17	-0.1
1,818,854	+		BBR_RS17980	0.17	+0.2
1,818,862	-		BBR_RS17980	0.18	+0.4
1,818,862	-		BBR_RS17980	0.18	-0.5
1,818,862	-		BBR_RS17980	0.18	+0.2
1,818,862	-		BBR_RS17980	0.18	-0.5
1,818,864	+		BBR_RS17980	0.18	+0.7
1,818,864	+		BBR_RS17980	0.18	+0.4
1,818,864	+		BBR_RS17980	0.18	-0.2
1,818,885	+		BBR_RS17980	0.22	-0.0
1,818,929	+		BBR_RS17980	0.30	+0.2
1,818,937	-		BBR_RS17980	0.31	+1.1
1,818,952	-		BBR_RS17980	0.34	+0.7
1,819,014	-		BBR_RS17980	0.45	-2.3
1,819,020	+		BBR_RS17980	0.46	+0.6
1,819,089	+		BBR_RS17980	0.58	-1.1
1,819,089	+		BBR_RS17980	0.58	+0.2
1,819,143	+		BBR_RS17980	0.68	-0.7
1,819,144	-		BBR_RS17980	0.68	+0.0
1,819,146	+		BBR_RS17980	0.68	-1.8
1,819,159	+		BBR_RS17980	0.71	+0.0
1,819,159	+		BBR_RS17980	0.71	-0.9
1,819,159	+		BBR_RS17980	0.71	+0.8
1,819,179	+		BBR_RS17980	0.74	-1.3
1,819,217	+		BBR_RS17980	0.81	+0.6
1,819,217	+		BBR_RS17980	0.81	-0.5
1,819,237	+		BBR_RS17980	0.85	+0.6
1,819,237	-		BBR_RS17980	0.85	+0.6
1,819,237	-		BBR_RS17980	0.85	-0.1
1,819,258	+		BBR_RS17980	0.88	+0.7
1,819,266	-		BBR_RS17980	0.90	-0.3
1,819,282	+				+1.4
1,819,282	+				+0.6
1,819,282	+				-1.5
1,819,290	-				-0.3
1,819,304	+				-0.7
1,819,327	+				+0.0
1,819,377	+				+2.1
1,819,383	+				+0.2
1,819,394	+				-0.7
1,819,394	+				+0.1
1,819,470	+				-0.6
1,819,470	-				+0.4
1,819,478	-				+0.9
1,819,501	-				-1.0
1,819,518	+				+0.5
1,819,518	+				-0.4
1,819,521	+				+0.4
1,819,524	-				+1.2
1,819,525	+				-0.6
1,819,526	-				+0.1
1,819,534	+				+0.2
1,819,547	-				+0.6
1,819,578	-				+0.8
1,819,578	-				-1.6
1,819,602	-				-0.1
1,819,614	-				-0.6