Experiment: cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12405 and BBR_RS12410 are separated by 124 nucleotides BBR_RS12410 and BBR_RS12415 are separated by 125 nucleotides
BBR_RS12405: BBR_RS12405 - ribonuclease PH, at 532,165 to 532,929
_RS12405
BBR_RS12410: BBR_RS12410 - non-canonical purine NTP pyrophosphatase, at 533,054 to 533,827
_RS12410
BBR_RS12415: BBR_RS12415 - permease, at 533,953 to 534,954
_RS12415
Position (kb) 533
534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 532.056 kb on + strand at 532.061 kb on + strand at 532.061 kb on + strand at 532.061 kb on + strand at 532.066 kb on + strand at 532.069 kb on - strand at 532.074 kb on - strand at 532.078 kb on + strand at 532.093 kb on - strand at 532.105 kb on - strand at 532.105 kb on - strand at 532.117 kb on - strand at 532.122 kb on - strand at 532.135 kb on + strand at 532.135 kb on + strand at 532.149 kb on - strand at 532.156 kb on - strand at 532.161 kb on - strand at 532.271 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.280 kb on + strand, within BBR_RS12405 at 532.288 kb on - strand, within BBR_RS12405 at 532.288 kb on - strand, within BBR_RS12405 at 532.328 kb on + strand, within BBR_RS12405 at 532.342 kb on + strand, within BBR_RS12405 at 532.360 kb on + strand, within BBR_RS12405 at 532.377 kb on + strand, within BBR_RS12405 at 532.409 kb on + strand, within BBR_RS12405 at 532.434 kb on - strand, within BBR_RS12405 at 532.563 kb on - strand, within BBR_RS12405 at 532.563 kb on - strand, within BBR_RS12405 at 532.585 kb on - strand, within BBR_RS12405 at 532.585 kb on - strand, within BBR_RS12405 at 532.587 kb on - strand, within BBR_RS12405 at 532.606 kb on - strand, within BBR_RS12405 at 532.626 kb on + strand, within BBR_RS12405 at 532.639 kb on - strand, within BBR_RS12405 at 532.654 kb on - strand, within BBR_RS12405 at 532.658 kb on - strand, within BBR_RS12405 at 532.669 kb on + strand, within BBR_RS12405 at 532.677 kb on - strand, within BBR_RS12405 at 532.695 kb on + strand, within BBR_RS12405 at 532.695 kb on + strand, within BBR_RS12405 at 532.695 kb on + strand, within BBR_RS12405 at 532.749 kb on - strand, within BBR_RS12405 at 532.795 kb on - strand, within BBR_RS12405 at 532.839 kb on - strand, within BBR_RS12405 at 532.848 kb on + strand, within BBR_RS12405 at 532.858 kb on + strand at 532.898 kb on - strand at 532.898 kb on - strand at 532.913 kb on + strand at 532.915 kb on - strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.918 kb on + strand at 532.926 kb on - strand at 532.926 kb on - strand at 532.930 kb on + strand at 532.931 kb on - strand at 532.959 kb on - strand at 532.959 kb on - strand at 532.961 kb on + strand at 532.963 kb on - strand at 532.972 kb on + strand at 532.987 kb on - strand at 532.995 kb on - strand at 532.995 kb on - strand at 533.004 kb on + strand at 533.009 kb on + strand at 533.012 kb on - strand at 533.062 kb on - strand at 533.128 kb on - strand at 533.147 kb on + strand, within BBR_RS12410 at 533.202 kb on - strand, within BBR_RS12410 at 533.221 kb on + strand, within BBR_RS12410 at 533.221 kb on + strand, within BBR_RS12410 at 533.221 kb on + strand, within BBR_RS12410 at 533.229 kb on - strand, within BBR_RS12410 at 533.237 kb on + strand, within BBR_RS12410 at 533.237 kb on + strand, within BBR_RS12410 at 533.274 kb on + strand, within BBR_RS12410 at 533.274 kb on + strand, within BBR_RS12410 at 533.346 kb on + strand, within BBR_RS12410 at 533.364 kb on - strand, within BBR_RS12410 at 533.364 kb on - strand, within BBR_RS12410 at 533.369 kb on - strand, within BBR_RS12410 at 533.369 kb on - strand, within BBR_RS12410 at 533.372 kb on - strand, within BBR_RS12410 at 533.392 kb on - strand, within BBR_RS12410 at 533.443 kb on - strand, within BBR_RS12410 at 533.451 kb on + strand, within BBR_RS12410 at 533.461 kb on - strand, within BBR_RS12410 at 533.514 kb on - strand, within BBR_RS12410 at 533.521 kb on + strand, within BBR_RS12410 at 533.583 kb on + strand, within BBR_RS12410 at 533.585 kb on + strand, within BBR_RS12410 at 533.585 kb on + strand, within BBR_RS12410 at 533.645 kb on + strand, within BBR_RS12410 at 533.689 kb on + strand, within BBR_RS12410 at 533.695 kb on + strand, within BBR_RS12410 at 533.697 kb on - strand, within BBR_RS12410 at 533.707 kb on + strand, within BBR_RS12410 at 533.713 kb on + strand, within BBR_RS12410 at 533.720 kb on + strand, within BBR_RS12410 at 533.720 kb on + strand, within BBR_RS12410 at 533.720 kb on + strand, within BBR_RS12410 at 533.725 kb on + strand, within BBR_RS12410 at 533.728 kb on - strand, within BBR_RS12410 at 533.782 kb on + strand at 533.824 kb on + strand at 533.853 kb on + strand at 533.856 kb on - strand at 533.859 kb on - strand at 533.859 kb on - strand at 533.859 kb on - strand at 533.859 kb on - strand at 533.860 kb on + strand at 533.860 kb on + strand at 533.860 kb on + strand at 533.860 kb on + strand at 533.868 kb on - strand at 533.868 kb on - strand at 533.913 kb on + strand at 533.921 kb on + strand at 533.938 kb on + strand at 533.944 kb on - strand at 533.952 kb on + strand at 533.952 kb on + strand at 533.986 kb on + strand at 534.032 kb on + strand at 534.032 kb on + strand at 534.040 kb on - strand at 534.043 kb on + strand at 534.043 kb on + strand at 534.043 kb on + strand at 534.051 kb on - strand at 534.051 kb on - strand at 534.051 kb on - strand at 534.055 kb on + strand, within BBR_RS12415 at 534.138 kb on + strand, within BBR_RS12415 at 534.154 kb on - strand, within BBR_RS12415 at 534.167 kb on + strand, within BBR_RS12415 at 534.172 kb on + strand, within BBR_RS12415 at 534.180 kb on - strand, within BBR_RS12415 at 534.190 kb on - strand, within BBR_RS12415 at 534.206 kb on + strand, within BBR_RS12415 at 534.206 kb on + strand, within BBR_RS12415 at 534.214 kb on - strand, within BBR_RS12415 at 534.214 kb on - strand, within BBR_RS12415 at 534.214 kb on - strand, within BBR_RS12415 at 534.214 kb on - strand, within BBR_RS12415 at 534.226 kb on - strand, within BBR_RS12415 at 534.226 kb on - strand, within BBR_RS12415 at 534.226 kb on - strand, within BBR_RS12415 at 534.226 kb on - strand, within BBR_RS12415 at 534.248 kb on + strand, within BBR_RS12415 at 534.248 kb on + strand, within BBR_RS12415 at 534.283 kb on + strand, within BBR_RS12415 at 534.291 kb on - strand, within BBR_RS12415 at 534.298 kb on + strand, within BBR_RS12415 at 534.298 kb on + strand, within BBR_RS12415 at 534.306 kb on - strand, within BBR_RS12415 at 534.311 kb on - strand, within BBR_RS12415 at 534.334 kb on - strand, within BBR_RS12415 at 534.355 kb on - strand, within BBR_RS12415 at 534.357 kb on + strand, within BBR_RS12415 at 534.372 kb on + strand, within BBR_RS12415 at 534.375 kb on - strand, within BBR_RS12415 at 534.380 kb on - strand, within BBR_RS12415 at 534.380 kb on - strand, within BBR_RS12415 at 534.403 kb on + strand, within BBR_RS12415 at 534.403 kb on + strand, within BBR_RS12415 at 534.409 kb on - strand, within BBR_RS12415 at 534.436 kb on - strand, within BBR_RS12415 at 534.444 kb on - strand, within BBR_RS12415 at 534.455 kb on + strand, within BBR_RS12415 at 534.463 kb on - strand, within BBR_RS12415 at 534.463 kb on - strand, within BBR_RS12415 at 534.474 kb on - strand, within BBR_RS12415 at 534.590 kb on + strand, within BBR_RS12415 at 534.598 kb on - strand, within BBR_RS12415 at 534.614 kb on + strand, within BBR_RS12415 at 534.624 kb on + strand, within BBR_RS12415 at 534.624 kb on + strand, within BBR_RS12415 at 534.662 kb on + strand, within BBR_RS12415 at 534.665 kb on + strand, within BBR_RS12415 at 534.670 kb on - strand, within BBR_RS12415 at 534.686 kb on - strand, within BBR_RS12415 at 534.686 kb on - strand, within BBR_RS12415 at 534.700 kb on - strand, within BBR_RS12415 at 534.702 kb on + strand, within BBR_RS12415 at 534.733 kb on + strand, within BBR_RS12415 at 534.733 kb on + strand, within BBR_RS12415 at 534.767 kb on + strand, within BBR_RS12415 at 534.769 kb on + strand, within BBR_RS12415 at 534.770 kb on - strand, within BBR_RS12415 at 534.770 kb on - strand, within BBR_RS12415 at 534.777 kb on + strand, within BBR_RS12415 at 534.813 kb on + strand, within BBR_RS12415
Per-strain Table
Position Strand Gene LocusTag Fraction cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 remove 532,056 + -1.0 532,061 + +0.5 532,061 + -0.2 532,061 + +0.7 532,066 + +1.0 532,069 - -0.5 532,074 - +1.3 532,078 + -0.2 532,093 - +0.4 532,105 - +0.4 532,105 - -0.1 532,117 - +0.1 532,122 - +0.9 532,135 + -1.1 532,135 + -1.7 532,149 - +1.0 532,156 - -1.2 532,161 - +2.0 532,271 + BBR_RS12405 0.14 +0.5 532,280 + BBR_RS12405 0.15 -1.4 532,280 + BBR_RS12405 0.15 -0.8 532,280 + BBR_RS12405 0.15 +0.5 532,280 + BBR_RS12405 0.15 +0.0 532,288 - BBR_RS12405 0.16 +1.0 532,288 - BBR_RS12405 0.16 -0.8 532,328 + BBR_RS12405 0.21 -1.9 532,342 + BBR_RS12405 0.23 -0.1 532,360 + BBR_RS12405 0.25 +0.1 532,377 + BBR_RS12405 0.28 -1.7 532,409 + BBR_RS12405 0.32 -0.4 532,434 - BBR_RS12405 0.35 +1.2 532,563 - BBR_RS12405 0.52 -0.8 532,563 - BBR_RS12405 0.52 +1.3 532,585 - BBR_RS12405 0.55 +0.1 532,585 - BBR_RS12405 0.55 +0.2 532,587 - BBR_RS12405 0.55 +0.3 532,606 - BBR_RS12405 0.58 -1.1 532,626 + BBR_RS12405 0.60 +0.1 532,639 - BBR_RS12405 0.62 +1.2 532,654 - BBR_RS12405 0.64 +0.8 532,658 - BBR_RS12405 0.64 -0.3 532,669 + BBR_RS12405 0.66 -0.9 532,677 - BBR_RS12405 0.67 -2.7 532,695 + BBR_RS12405 0.69 +0.8 532,695 + BBR_RS12405 0.69 -0.0 532,695 + BBR_RS12405 0.69 -1.4 532,749 - BBR_RS12405 0.76 -0.4 532,795 - BBR_RS12405 0.82 +0.3 532,839 - BBR_RS12405 0.88 +0.9 532,848 + BBR_RS12405 0.89 -0.1 532,858 + -0.6 532,898 - +0.2 532,898 - -1.7 532,913 + +0.6 532,915 - -0.5 532,918 + -0.4 532,918 + -0.9 532,918 + -0.6 532,918 + -0.1 532,918 + -0.7 532,926 - -1.6 532,926 - -0.7 532,930 + -0.1 532,931 - -0.7 532,959 - -0.2 532,959 - +0.2 532,961 + +0.4 532,963 - -1.3 532,972 + +0.1 532,987 - -0.4 532,995 - +0.5 532,995 - -1.1 533,004 + +1.9 533,009 + +0.1 533,012 - +0.3 533,062 - +0.5 533,128 - +0.8 533,147 + BBR_RS12410 0.12 -1.0 533,202 - BBR_RS12410 0.19 +0.1 533,221 + BBR_RS12410 0.22 -1.7 533,221 + BBR_RS12410 0.22 -1.4 533,221 + BBR_RS12410 0.22 -1.2 533,229 - BBR_RS12410 0.23 -0.7 533,237 + BBR_RS12410 0.24 +1.3 533,237 + BBR_RS12410 0.24 +2.2 533,274 + BBR_RS12410 0.28 -0.0 533,274 + BBR_RS12410 0.28 -2.2 533,346 + BBR_RS12410 0.38 +1.5 533,364 - BBR_RS12410 0.40 +0.2 533,364 - BBR_RS12410 0.40 -1.2 533,369 - BBR_RS12410 0.41 +1.5 533,369 - BBR_RS12410 0.41 -1.4 533,372 - BBR_RS12410 0.41 -1.7 533,392 - BBR_RS12410 0.44 +1.1 533,443 - BBR_RS12410 0.50 -2.2 533,451 + BBR_RS12410 0.51 +0.4 533,461 - BBR_RS12410 0.53 -0.6 533,514 - BBR_RS12410 0.59 -0.5 533,521 + BBR_RS12410 0.60 +0.0 533,583 + BBR_RS12410 0.68 -0.4 533,585 + BBR_RS12410 0.69 +0.8 533,585 + BBR_RS12410 0.69 +0.2 533,645 + BBR_RS12410 0.76 -0.6 533,689 + BBR_RS12410 0.82 -0.9 533,695 + BBR_RS12410 0.83 +0.4 533,697 - BBR_RS12410 0.83 -0.6 533,707 + BBR_RS12410 0.84 -0.0 533,713 + BBR_RS12410 0.85 -1.3 533,720 + BBR_RS12410 0.86 +0.1 533,720 + BBR_RS12410 0.86 -0.7 533,720 + BBR_RS12410 0.86 +0.1 533,725 + BBR_RS12410 0.87 +0.9 533,728 - BBR_RS12410 0.87 +0.6 533,782 + +0.0 533,824 + -0.8 533,853 + +0.7 533,856 - +0.4 533,859 - -0.1 533,859 - +0.1 533,859 - +1.7 533,859 - -0.3 533,860 + +0.6 533,860 + +0.1 533,860 + -0.7 533,860 + -0.9 533,868 - +0.2 533,868 - +0.6 533,913 + +1.1 533,921 + -1.1 533,938 + -0.3 533,944 - +2.0 533,952 + +1.0 533,952 + +0.4 533,986 + +1.5 534,032 + -0.2 534,032 + +0.5 534,040 - +0.1 534,043 + -0.1 534,043 + -0.9 534,043 + +1.7 534,051 - -0.2 534,051 - +0.9 534,051 - +0.4 534,055 + BBR_RS12415 0.10 -0.3 534,138 + BBR_RS12415 0.18 +0.0 534,154 - BBR_RS12415 0.20 -0.6 534,167 + BBR_RS12415 0.21 -1.2 534,172 + BBR_RS12415 0.22 -0.3 534,180 - BBR_RS12415 0.23 -0.9 534,190 - BBR_RS12415 0.24 +0.9 534,206 + BBR_RS12415 0.25 -0.3 534,206 + BBR_RS12415 0.25 +1.0 534,214 - BBR_RS12415 0.26 +0.3 534,214 - BBR_RS12415 0.26 +0.4 534,214 - BBR_RS12415 0.26 -0.3 534,214 - BBR_RS12415 0.26 +0.1 534,226 - BBR_RS12415 0.27 -0.5 534,226 - BBR_RS12415 0.27 +0.3 534,226 - BBR_RS12415 0.27 +0.7 534,226 - BBR_RS12415 0.27 -0.1 534,248 + BBR_RS12415 0.29 -0.2 534,248 + BBR_RS12415 0.29 +0.8 534,283 + BBR_RS12415 0.33 +0.1 534,291 - BBR_RS12415 0.34 -0.4 534,298 + BBR_RS12415 0.34 +0.0 534,298 + BBR_RS12415 0.34 +0.6 534,306 - BBR_RS12415 0.35 +0.1 534,311 - BBR_RS12415 0.36 -0.4 534,334 - BBR_RS12415 0.38 +0.6 534,355 - BBR_RS12415 0.40 +1.0 534,357 + BBR_RS12415 0.40 +0.5 534,372 + BBR_RS12415 0.42 +0.4 534,375 - BBR_RS12415 0.42 +0.2 534,380 - BBR_RS12415 0.43 -0.2 534,380 - BBR_RS12415 0.43 -0.7 534,403 + BBR_RS12415 0.45 -0.3 534,403 + BBR_RS12415 0.45 -0.4 534,409 - BBR_RS12415 0.46 +0.6 534,436 - BBR_RS12415 0.48 -1.1 534,444 - BBR_RS12415 0.49 +0.5 534,455 + BBR_RS12415 0.50 -0.1 534,463 - BBR_RS12415 0.51 +1.0 534,463 - BBR_RS12415 0.51 -0.9 534,474 - BBR_RS12415 0.52 -0.6 534,590 + BBR_RS12415 0.64 -0.8 534,598 - BBR_RS12415 0.64 -0.1 534,614 + BBR_RS12415 0.66 -0.6 534,624 + BBR_RS12415 0.67 +0.4 534,624 + BBR_RS12415 0.67 +0.9 534,662 + BBR_RS12415 0.71 +0.7 534,665 + BBR_RS12415 0.71 -0.7 534,670 - BBR_RS12415 0.72 -2.2 534,686 - BBR_RS12415 0.73 +0.9 534,686 - BBR_RS12415 0.73 -1.0 534,700 - BBR_RS12415 0.75 -0.4 534,702 + BBR_RS12415 0.75 -0.3 534,733 + BBR_RS12415 0.78 -0.4 534,733 + BBR_RS12415 0.78 +1.1 534,767 + BBR_RS12415 0.81 +0.9 534,769 + BBR_RS12415 0.81 +1.4 534,770 - BBR_RS12415 0.82 -1.2 534,770 - BBR_RS12415 0.82 +0.5 534,777 + BBR_RS12415 0.82 -0.7 534,813 + BBR_RS12415 0.86 +0.3
Or see this region's nucleotide sequence