Experiment: cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11195 and BBR_RS11200 are separated by 151 nucleotides BBR_RS11200 and BBR_RS11205 are separated by 123 nucleotides BBR_RS11205 and BBR_RS11210 are separated by 257 nucleotides
BBR_RS11195: BBR_RS11195 - DNA polymerase III subunit delta', at 256,662 to 257,813
_RS11195
BBR_RS11200: BBR_RS11200 - LacI family transcriptional regulator, at 257,965 to 258,594
_RS11200
BBR_RS11205: BBR_RS11205 - HPr family phosphocarrier protein, at 258,718 to 258,978
_RS11205
BBR_RS11210: BBR_RS11210 - phosphoenolpyruvate--protein phosphotransferase, at 259,236 to 260,885
_RS11210
Position (kb) 258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 257.821 kb on - strand at 257.822 kb on - strand at 257.822 kb on - strand at 257.823 kb on + strand at 257.843 kb on + strand at 257.855 kb on + strand at 257.855 kb on + strand at 257.855 kb on + strand at 257.855 kb on + strand at 257.861 kb on - strand at 257.863 kb on - strand at 257.878 kb on + strand at 257.886 kb on - strand at 257.886 kb on - strand at 257.886 kb on - strand at 257.902 kb on + strand at 257.902 kb on + strand at 257.902 kb on + strand at 257.902 kb on + strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.910 kb on - strand at 257.912 kb on + strand at 257.912 kb on + strand at 257.917 kb on + strand at 257.917 kb on + strand at 257.917 kb on + strand at 257.941 kb on - strand at 257.951 kb on - strand at 257.951 kb on - strand at 257.961 kb on - strand at 257.990 kb on - strand at 258.026 kb on + strand at 258.026 kb on + strand at 258.031 kb on + strand, within BBR_RS11200 at 258.056 kb on - strand, within BBR_RS11200 at 258.076 kb on - strand, within BBR_RS11200 at 258.076 kb on - strand, within BBR_RS11200 at 258.083 kb on + strand, within BBR_RS11200 at 258.088 kb on + strand, within BBR_RS11200 at 258.091 kb on - strand, within BBR_RS11200 at 258.091 kb on - strand, within BBR_RS11200 at 258.096 kb on - strand, within BBR_RS11200 at 258.118 kb on - strand, within BBR_RS11200 at 258.118 kb on - strand, within BBR_RS11200 at 258.121 kb on - strand, within BBR_RS11200 at 258.128 kb on + strand, within BBR_RS11200 at 258.128 kb on + strand, within BBR_RS11200 at 258.141 kb on - strand, within BBR_RS11200 at 258.151 kb on + strand, within BBR_RS11200 at 258.159 kb on - strand, within BBR_RS11200 at 258.165 kb on + strand, within BBR_RS11200 at 258.165 kb on + strand, within BBR_RS11200 at 258.178 kb on + strand, within BBR_RS11200 at 258.178 kb on + strand, within BBR_RS11200 at 258.178 kb on + strand, within BBR_RS11200 at 258.183 kb on + strand, within BBR_RS11200 at 258.186 kb on - strand, within BBR_RS11200 at 258.186 kb on - strand, within BBR_RS11200 at 258.213 kb on + strand, within BBR_RS11200 at 258.216 kb on + strand, within BBR_RS11200 at 258.216 kb on + strand, within BBR_RS11200 at 258.224 kb on - strand, within BBR_RS11200 at 258.235 kb on + strand, within BBR_RS11200 at 258.243 kb on - strand, within BBR_RS11200 at 258.261 kb on + strand, within BBR_RS11200 at 258.273 kb on + strand, within BBR_RS11200 at 258.294 kb on + strand, within BBR_RS11200 at 258.318 kb on + strand, within BBR_RS11200 at 258.318 kb on + strand, within BBR_RS11200 at 258.318 kb on + strand, within BBR_RS11200 at 258.318 kb on + strand, within BBR_RS11200 at 258.318 kb on + strand, within BBR_RS11200 at 258.318 kb on + strand, within BBR_RS11200 at 258.326 kb on - strand, within BBR_RS11200 at 258.326 kb on - strand, within BBR_RS11200 at 258.326 kb on - strand, within BBR_RS11200 at 258.326 kb on - strand, within BBR_RS11200 at 258.326 kb on - strand, within BBR_RS11200 at 258.359 kb on - strand, within BBR_RS11200 at 258.377 kb on - strand, within BBR_RS11200 at 258.391 kb on - strand, within BBR_RS11200 at 258.391 kb on - strand, within BBR_RS11200 at 258.391 kb on - strand, within BBR_RS11200 at 258.391 kb on - strand, within BBR_RS11200 at 258.397 kb on + strand, within BBR_RS11200 at 258.403 kb on - strand, within BBR_RS11200 at 258.403 kb on - strand, within BBR_RS11200 at 258.403 kb on - strand, within BBR_RS11200 at 258.403 kb on - strand, within BBR_RS11200 at 258.403 kb on - strand, within BBR_RS11200 at 258.403 kb on - strand, within BBR_RS11200 at 258.432 kb on + strand, within BBR_RS11200 at 258.432 kb on + strand, within BBR_RS11200 at 258.432 kb on + strand, within BBR_RS11200 at 258.440 kb on - strand, within BBR_RS11200 at 258.465 kb on + strand, within BBR_RS11200 at 258.503 kb on + strand, within BBR_RS11200 at 258.508 kb on + strand, within BBR_RS11200 at 258.516 kb on - strand, within BBR_RS11200 at 258.516 kb on - strand, within BBR_RS11200 at 258.540 kb on + strand at 258.553 kb on + strand at 258.571 kb on - strand at 258.571 kb on - strand at 258.598 kb on - strand at 258.653 kb on + strand at 258.745 kb on - strand, within BBR_RS11205 at 258.797 kb on + strand, within BBR_RS11205 at 258.797 kb on + strand, within BBR_RS11205 at 258.805 kb on - strand, within BBR_RS11205 at 258.805 kb on - strand, within BBR_RS11205 at 258.912 kb on - strand, within BBR_RS11205 at 258.961 kb on - strand at 258.983 kb on - strand at 258.983 kb on - strand at 258.997 kb on - strand at 259.045 kb on - strand at 259.045 kb on - strand at 259.045 kb on - strand at 259.046 kb on + strand at 259.052 kb on - strand at 259.087 kb on + strand at 259.101 kb on - strand at 259.162 kb on + strand at 259.170 kb on + strand at 259.170 kb on + strand at 259.183 kb on + strand at 259.211 kb on - strand at 259.213 kb on - strand at 259.214 kb on - strand at 259.214 kb on - strand at 259.231 kb on + strand at 259.347 kb on - strand at 259.481 kb on - strand, within BBR_RS11210 at 259.523 kb on + strand, within BBR_RS11210 at 259.567 kb on - strand, within BBR_RS11210 at 259.575 kb on + strand, within BBR_RS11210 at 259.644 kb on - strand, within BBR_RS11210 at 259.644 kb on - strand, within BBR_RS11210 at 259.644 kb on - strand, within BBR_RS11210 at 259.657 kb on - strand, within BBR_RS11210 at 259.667 kb on - strand, within BBR_RS11210 at 259.669 kb on - strand, within BBR_RS11210 at 259.767 kb on + strand, within BBR_RS11210 at 259.768 kb on - strand, within BBR_RS11210 at 259.768 kb on - strand, within BBR_RS11210 at 259.869 kb on + strand, within BBR_RS11210 at 259.874 kb on + strand, within BBR_RS11210 at 259.874 kb on + strand, within BBR_RS11210 at 259.890 kb on - strand, within BBR_RS11210 at 259.897 kb on - strand, within BBR_RS11210
Per-strain Table
Position Strand Gene LocusTag Fraction cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 remove 257,821 - +0.3 257,822 - +0.7 257,822 - +0.3 257,823 + +0.4 257,843 + +1.2 257,855 + +0.6 257,855 + +0.5 257,855 + +0.7 257,855 + -1.0 257,861 - +0.7 257,863 - -0.9 257,878 + +0.1 257,886 - -1.0 257,886 - -1.1 257,886 - -0.5 257,902 + -0.7 257,902 + +0.4 257,902 + -0.8 257,902 + +1.2 257,910 - -0.2 257,910 - -0.3 257,910 - +0.3 257,910 - -0.8 257,910 - +0.1 257,910 - +1.1 257,910 - -0.3 257,910 - +1.6 257,910 - +0.3 257,910 - +1.6 257,910 - +0.7 257,912 + -0.2 257,912 + +0.2 257,917 + +0.4 257,917 + -0.1 257,917 + -0.5 257,941 - -0.3 257,951 - -0.8 257,951 - +0.4 257,961 - +0.7 257,990 - -0.6 258,026 + +2.0 258,026 + +0.6 258,031 + BBR_RS11200 0.10 +0.9 258,056 - BBR_RS11200 0.14 -1.7 258,076 - BBR_RS11200 0.18 +3.4 258,076 - BBR_RS11200 0.18 -1.2 258,083 + BBR_RS11200 0.19 +1.2 258,088 + BBR_RS11200 0.20 +2.5 258,091 - BBR_RS11200 0.20 -0.3 258,091 - BBR_RS11200 0.20 -0.1 258,096 - BBR_RS11200 0.21 -0.3 258,118 - BBR_RS11200 0.24 +0.4 258,118 - BBR_RS11200 0.24 +0.1 258,121 - BBR_RS11200 0.25 -0.7 258,128 + BBR_RS11200 0.26 -0.1 258,128 + BBR_RS11200 0.26 +0.7 258,141 - BBR_RS11200 0.28 -0.6 258,151 + BBR_RS11200 0.30 +0.5 258,159 - BBR_RS11200 0.31 +0.0 258,165 + BBR_RS11200 0.32 -1.6 258,165 + BBR_RS11200 0.32 +0.1 258,178 + BBR_RS11200 0.34 +0.0 258,178 + BBR_RS11200 0.34 +0.3 258,178 + BBR_RS11200 0.34 -1.4 258,183 + BBR_RS11200 0.35 +0.7 258,186 - BBR_RS11200 0.35 -0.2 258,186 - BBR_RS11200 0.35 -0.4 258,213 + BBR_RS11200 0.39 -1.6 258,216 + BBR_RS11200 0.40 -0.4 258,216 + BBR_RS11200 0.40 -0.6 258,224 - BBR_RS11200 0.41 -0.1 258,235 + BBR_RS11200 0.43 +0.3 258,243 - BBR_RS11200 0.44 +0.7 258,261 + BBR_RS11200 0.47 +1.0 258,273 + BBR_RS11200 0.49 -0.7 258,294 + BBR_RS11200 0.52 -1.7 258,318 + BBR_RS11200 0.56 +0.5 258,318 + BBR_RS11200 0.56 -1.1 258,318 + BBR_RS11200 0.56 +1.0 258,318 + BBR_RS11200 0.56 -0.3 258,318 + BBR_RS11200 0.56 -0.5 258,318 + BBR_RS11200 0.56 -2.0 258,326 - BBR_RS11200 0.57 +0.5 258,326 - BBR_RS11200 0.57 +0.6 258,326 - BBR_RS11200 0.57 +0.2 258,326 - BBR_RS11200 0.57 -0.1 258,326 - BBR_RS11200 0.57 -0.7 258,359 - BBR_RS11200 0.63 -1.0 258,377 - BBR_RS11200 0.65 -0.1 258,391 - BBR_RS11200 0.68 -0.1 258,391 - BBR_RS11200 0.68 -0.4 258,391 - BBR_RS11200 0.68 +0.0 258,391 - BBR_RS11200 0.68 -1.1 258,397 + BBR_RS11200 0.69 -0.9 258,403 - BBR_RS11200 0.70 -1.3 258,403 - BBR_RS11200 0.70 +0.0 258,403 - BBR_RS11200 0.70 -0.3 258,403 - BBR_RS11200 0.70 -0.5 258,403 - BBR_RS11200 0.70 -0.3 258,403 - BBR_RS11200 0.70 -1.5 258,432 + BBR_RS11200 0.74 +0.3 258,432 + BBR_RS11200 0.74 +0.4 258,432 + BBR_RS11200 0.74 -2.1 258,440 - BBR_RS11200 0.75 -1.1 258,465 + BBR_RS11200 0.79 +0.3 258,503 + BBR_RS11200 0.85 -2.3 258,508 + BBR_RS11200 0.86 -1.5 258,516 - BBR_RS11200 0.87 -0.7 258,516 - BBR_RS11200 0.87 -0.5 258,540 + -0.6 258,553 + +0.3 258,571 - -0.2 258,571 - +0.7 258,598 - -1.2 258,653 + +0.6 258,745 - BBR_RS11205 0.10 -0.9 258,797 + BBR_RS11205 0.30 +8.4 258,797 + BBR_RS11205 0.30 +9.4 258,805 - BBR_RS11205 0.33 +8.1 258,805 - BBR_RS11205 0.33 +8.4 258,912 - BBR_RS11205 0.74 +8.7 258,961 - +8.6 258,983 - +7.8 258,983 - +8.5 258,997 - -2.9 259,045 - -2.1 259,045 - -3.4 259,045 - -2.2 259,046 + -0.7 259,052 - +0.0 259,087 + -1.5 259,101 - +0.3 259,162 + +0.0 259,170 + -1.3 259,170 + +0.6 259,183 + -2.0 259,211 - +0.0 259,213 - -2.5 259,214 - +0.4 259,214 - -0.3 259,231 + +8.4 259,347 - +9.7 259,481 - BBR_RS11210 0.15 +6.8 259,523 + BBR_RS11210 0.17 +9.0 259,567 - BBR_RS11210 0.20 +8.9 259,575 + BBR_RS11210 0.21 +8.6 259,644 - BBR_RS11210 0.25 +8.7 259,644 - BBR_RS11210 0.25 +9.1 259,644 - BBR_RS11210 0.25 +9.2 259,657 - BBR_RS11210 0.26 +8.7 259,667 - BBR_RS11210 0.26 +8.5 259,669 - BBR_RS11210 0.26 +9.4 259,767 + BBR_RS11210 0.32 +8.1 259,768 - BBR_RS11210 0.32 +4.8 259,768 - BBR_RS11210 0.32 +8.4 259,869 + BBR_RS11210 0.38 +8.5 259,874 + BBR_RS11210 0.39 +8.7 259,874 + BBR_RS11210 0.39 +9.1 259,890 - BBR_RS11210 0.40 +8.7 259,897 - BBR_RS11210 0.40 +8.7
Or see this region's nucleotide sequence