Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13445

Experiment: cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13440 and BBR_RS13445 are separated by 137 nucleotidesBBR_RS13445 and BBR_RS13450 are separated by 207 nucleotides BBR_RS13440: BBR_RS13440 - alpha/beta hydrolase, at 785,288 to 786,625 _RS13440 BBR_RS13445: BBR_RS13445 - phosphoribosylformylglycinamidine synthase, at 786,763 to 790,497 _RS13445 BBR_RS13450: BBR_RS13450 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 790,705 to 791,457 _RS13450 Position (kb) 786 787 788 789 790 791Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 785.769 kb on + strand, within BBR_RS13440at 785.883 kb on + strand, within BBR_RS13440at 785.934 kb on - strand, within BBR_RS13440at 786.057 kb on - strand, within BBR_RS13440at 786.064 kb on + strand, within BBR_RS13440at 786.069 kb on + strand, within BBR_RS13440at 786.101 kb on + strand, within BBR_RS13440at 786.109 kb on - strand, within BBR_RS13440at 786.177 kb on + strand, within BBR_RS13440at 786.208 kb on + strand, within BBR_RS13440at 786.216 kb on - strand, within BBR_RS13440at 786.216 kb on - strand, within BBR_RS13440at 786.221 kb on - strand, within BBR_RS13440at 786.221 kb on - strand, within BBR_RS13440at 786.230 kb on - strand, within BBR_RS13440at 786.308 kb on + strand, within BBR_RS13440at 786.314 kb on + strand, within BBR_RS13440at 786.345 kb on - strand, within BBR_RS13440at 786.406 kb on - strand, within BBR_RS13440at 786.406 kb on - strand, within BBR_RS13440at 786.426 kb on + strand, within BBR_RS13440at 786.469 kb on - strand, within BBR_RS13440at 786.550 kb on - strandat 786.602 kb on + strandat 786.633 kb on + strandat 786.675 kb on - strandat 786.680 kb on - strandat 786.727 kb on + strandat 786.727 kb on + strandat 786.728 kb on - strandat 786.728 kb on - strandat 786.735 kb on - strandat 786.883 kb on + strandat 786.908 kb on - strandat 786.912 kb on + strandat 786.952 kb on - strandat 786.965 kb on + strandat 787.003 kb on - strandat 787.069 kb on - strandat 787.069 kb on - strandat 787.082 kb on + strandat 787.092 kb on + strandat 787.162 kb on + strand, within BBR_RS13445at 787.228 kb on - strand, within BBR_RS13445at 787.284 kb on + strand, within BBR_RS13445at 787.328 kb on + strand, within BBR_RS13445at 787.591 kb on + strand, within BBR_RS13445at 787.700 kb on + strand, within BBR_RS13445at 787.823 kb on + strand, within BBR_RS13445at 787.840 kb on - strand, within BBR_RS13445at 787.844 kb on - strand, within BBR_RS13445at 787.886 kb on + strand, within BBR_RS13445at 787.926 kb on - strand, within BBR_RS13445at 787.927 kb on - strand, within BBR_RS13445at 787.942 kb on - strand, within BBR_RS13445at 788.000 kb on + strand, within BBR_RS13445at 788.081 kb on + strand, within BBR_RS13445at 788.314 kb on - strand, within BBR_RS13445at 788.320 kb on - strand, within BBR_RS13445at 788.348 kb on + strand, within BBR_RS13445at 788.376 kb on + strand, within BBR_RS13445at 788.380 kb on - strand, within BBR_RS13445at 788.387 kb on - strand, within BBR_RS13445at 788.416 kb on + strand, within BBR_RS13445at 788.520 kb on + strand, within BBR_RS13445at 788.539 kb on - strand, within BBR_RS13445at 788.578 kb on - strand, within BBR_RS13445at 788.653 kb on - strand, within BBR_RS13445at 788.663 kb on + strand, within BBR_RS13445at 788.678 kb on + strand, within BBR_RS13445at 788.686 kb on - strand, within BBR_RS13445at 788.854 kb on + strand, within BBR_RS13445at 788.892 kb on + strand, within BBR_RS13445at 788.897 kb on + strand, within BBR_RS13445at 788.900 kb on - strand, within BBR_RS13445at 788.910 kb on - strand, within BBR_RS13445at 788.910 kb on - strand, within BBR_RS13445at 788.910 kb on - strand, within BBR_RS13445at 788.930 kb on + strand, within BBR_RS13445at 789.069 kb on - strand, within BBR_RS13445at 789.071 kb on - strand, within BBR_RS13445at 789.079 kb on - strand, within BBR_RS13445at 789.114 kb on + strand, within BBR_RS13445at 789.119 kb on - strand, within BBR_RS13445at 789.122 kb on - strand, within BBR_RS13445at 789.127 kb on - strand, within BBR_RS13445at 789.173 kb on - strand, within BBR_RS13445at 789.259 kb on - strand, within BBR_RS13445at 789.332 kb on + strand, within BBR_RS13445at 789.378 kb on + strand, within BBR_RS13445at 789.406 kb on - strand, within BBR_RS13445at 789.423 kb on - strand, within BBR_RS13445at 789.428 kb on - strand, within BBR_RS13445at 789.428 kb on - strand, within BBR_RS13445at 789.572 kb on - strand, within BBR_RS13445at 789.589 kb on + strand, within BBR_RS13445at 789.594 kb on + strand, within BBR_RS13445at 789.607 kb on - strand, within BBR_RS13445at 789.607 kb on - strand, within BBR_RS13445at 789.607 kb on - strand, within BBR_RS13445at 789.656 kb on + strand, within BBR_RS13445at 789.699 kb on + strand, within BBR_RS13445at 789.707 kb on - strand, within BBR_RS13445at 789.744 kb on + strand, within BBR_RS13445at 789.799 kb on + strand, within BBR_RS13445at 789.799 kb on + strand, within BBR_RS13445at 789.807 kb on - strand, within BBR_RS13445at 789.807 kb on - strand, within BBR_RS13445at 789.807 kb on - strand, within BBR_RS13445at 789.839 kb on + strand, within BBR_RS13445at 789.842 kb on - strand, within BBR_RS13445at 789.842 kb on - strand, within BBR_RS13445at 789.842 kb on - strand, within BBR_RS13445at 789.847 kb on - strand, within BBR_RS13445at 789.940 kb on - strand, within BBR_RS13445at 789.995 kb on - strand, within BBR_RS13445at 790.004 kb on + strand, within BBR_RS13445at 790.011 kb on - strand, within BBR_RS13445at 790.060 kb on - strand, within BBR_RS13445at 790.072 kb on + strand, within BBR_RS13445at 790.073 kb on + strand, within BBR_RS13445at 790.149 kb on + strandat 790.258 kb on + strandat 790.323 kb on + strandat 790.350 kb on + strandat 790.355 kb on - strandat 790.360 kb on + strandat 790.361 kb on + strandat 790.410 kb on + strandat 790.616 kb on + strandat 790.662 kb on - strandat 790.673 kb on + strandat 790.688 kb on + strandat 790.724 kb on + strandat 790.730 kb on + strandat 790.786 kb on + strand, within BBR_RS13450at 791.041 kb on + strand, within BBR_RS13450at 791.041 kb on + strand, within BBR_RS13450at 791.098 kb on + strand, within BBR_RS13450at 791.341 kb on + strand, within BBR_RS13450at 791.408 kb on + strandat 791.472 kb on - strandat 791.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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785,769 + BBR_RS13440 0.36 +0.9
785,883 + BBR_RS13440 0.44 +0.2
785,934 - BBR_RS13440 0.48 +1.2
786,057 - BBR_RS13440 0.57 -0.9
786,064 + BBR_RS13440 0.58 +0.5
786,069 + BBR_RS13440 0.58 +0.3
786,101 + BBR_RS13440 0.61 -0.8
786,109 - BBR_RS13440 0.61 +0.1
786,177 + BBR_RS13440 0.66 +1.1
786,208 + BBR_RS13440 0.69 -0.4
786,216 - BBR_RS13440 0.69 +0.5
786,216 - BBR_RS13440 0.69 -1.1
786,221 - BBR_RS13440 0.70 -0.3
786,221 - BBR_RS13440 0.70 +0.1
786,230 - BBR_RS13440 0.70 +0.5
786,308 + BBR_RS13440 0.76 +0.6
786,314 + BBR_RS13440 0.77 +0.9
786,345 - BBR_RS13440 0.79 +1.2
786,406 - BBR_RS13440 0.84 +0.0
786,406 - BBR_RS13440 0.84 +0.3
786,426 + BBR_RS13440 0.85 -0.2
786,469 - BBR_RS13440 0.88 +0.5
786,550 - +0.7
786,602 + +0.1
786,633 + +1.0
786,675 - +0.4
786,680 - -0.3
786,727 + +0.9
786,727 + +0.3
786,728 - +0.1
786,728 - -0.4
786,735 - +0.6
786,883 + -1.9
786,908 - -2.2
786,912 + -2.7
786,952 - -3.4
786,965 + -3.0
787,003 - -3.9
787,069 - -3.2
787,069 - -3.7
787,082 + -4.4
787,092 + +0.7
787,162 + BBR_RS13445 0.11 -3.8
787,228 - BBR_RS13445 0.12 -3.7
787,284 + BBR_RS13445 0.14 -2.8
787,328 + BBR_RS13445 0.15 -2.2
787,591 + BBR_RS13445 0.22 -3.1
787,700 + BBR_RS13445 0.25 -3.1
787,823 + BBR_RS13445 0.28 -2.3
787,840 - BBR_RS13445 0.29 -2.5
787,844 - BBR_RS13445 0.29 -2.3
787,886 + BBR_RS13445 0.30 -2.6
787,926 - BBR_RS13445 0.31 -1.4
787,927 - BBR_RS13445 0.31 -1.3
787,942 - BBR_RS13445 0.32 -1.4
788,000 + BBR_RS13445 0.33 -3.4
788,081 + BBR_RS13445 0.35 -2.4
788,314 - BBR_RS13445 0.42 -2.9
788,320 - BBR_RS13445 0.42 -3.6
788,348 + BBR_RS13445 0.42 -2.3
788,376 + BBR_RS13445 0.43 -2.6
788,380 - BBR_RS13445 0.43 -3.9
788,387 - BBR_RS13445 0.43 -3.2
788,416 + BBR_RS13445 0.44 -4.2
788,520 + BBR_RS13445 0.47 -0.8
788,539 - BBR_RS13445 0.48 -1.5
788,578 - BBR_RS13445 0.49 -2.0
788,653 - BBR_RS13445 0.51 -4.3
788,663 + BBR_RS13445 0.51 -2.9
788,678 + BBR_RS13445 0.51 -2.6
788,686 - BBR_RS13445 0.51 -2.8
788,854 + BBR_RS13445 0.56 -1.3
788,892 + BBR_RS13445 0.57 -0.7
788,897 + BBR_RS13445 0.57 -3.2
788,900 - BBR_RS13445 0.57 -2.7
788,910 - BBR_RS13445 0.57 -4.0
788,910 - BBR_RS13445 0.57 -3.8
788,910 - BBR_RS13445 0.57 -4.1
788,930 + BBR_RS13445 0.58 -3.4
789,069 - BBR_RS13445 0.62 -4.3
789,071 - BBR_RS13445 0.62 -3.9
789,079 - BBR_RS13445 0.62 -3.7
789,114 + BBR_RS13445 0.63 -3.3
789,119 - BBR_RS13445 0.63 -3.8
789,122 - BBR_RS13445 0.63 -3.9
789,127 - BBR_RS13445 0.63 -4.1
789,173 - BBR_RS13445 0.65 -2.9
789,259 - BBR_RS13445 0.67 -3.6
789,332 + BBR_RS13445 0.69 -2.9
789,378 + BBR_RS13445 0.70 -1.8
789,406 - BBR_RS13445 0.71 -3.0
789,423 - BBR_RS13445 0.71 -2.7
789,428 - BBR_RS13445 0.71 -2.7
789,428 - BBR_RS13445 0.71 -3.1
789,572 - BBR_RS13445 0.75 -2.1
789,589 + BBR_RS13445 0.76 -3.2
789,594 + BBR_RS13445 0.76 -3.0
789,607 - BBR_RS13445 0.76 -2.2
789,607 - BBR_RS13445 0.76 -4.1
789,607 - BBR_RS13445 0.76 -2.5
789,656 + BBR_RS13445 0.77 -3.0
789,699 + BBR_RS13445 0.79 -3.8
789,707 - BBR_RS13445 0.79 -3.3
789,744 + BBR_RS13445 0.80 -4.9
789,799 + BBR_RS13445 0.81 -2.6
789,799 + BBR_RS13445 0.81 -3.0
789,807 - BBR_RS13445 0.81 -1.9
789,807 - BBR_RS13445 0.81 -2.8
789,807 - BBR_RS13445 0.81 -2.7
789,839 + BBR_RS13445 0.82 -3.0
789,842 - BBR_RS13445 0.82 -3.4
789,842 - BBR_RS13445 0.82 -1.3
789,842 - BBR_RS13445 0.82 -3.3
789,847 - BBR_RS13445 0.83 -2.9
789,940 - BBR_RS13445 0.85 -3.4
789,995 - BBR_RS13445 0.87 -3.2
790,004 + BBR_RS13445 0.87 -3.3
790,011 - BBR_RS13445 0.87 -2.8
790,060 - BBR_RS13445 0.88 -5.3
790,072 + BBR_RS13445 0.89 -4.3
790,073 + BBR_RS13445 0.89 -3.5
790,149 + -2.6
790,258 + -4.7
790,323 + -1.5
790,350 + -2.8
790,355 - -2.8
790,360 + -1.5
790,361 + -2.9
790,410 + -1.9
790,616 + -2.8
790,662 - -0.7
790,673 + -1.4
790,688 + -3.3
790,724 + -3.8
790,730 + -1.6
790,786 + BBR_RS13450 0.11 -1.1
791,041 + BBR_RS13450 0.45 -2.6
791,041 + BBR_RS13450 0.45 -2.3
791,098 + BBR_RS13450 0.52 -2.9
791,341 + BBR_RS13450 0.84 -3.5
791,408 + -3.4
791,472 - -3.8
791,490 + -2.8

Or see this region's nucleotide sequence