Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12420

Experiment: cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12415 and BBR_RS12420 are separated by 268 nucleotidesBBR_RS12420 and BBR_RS12425 are separated by 91 nucleotidesBBR_RS12425 and BBR_RS12430 are separated by 358 nucleotides BBR_RS12415: BBR_RS12415 - permease, at 533,953 to 534,954 _RS12415 BBR_RS12420: BBR_RS12420 - tRNA-Leu, at 535,223 to 535,303 _RS12420 BBR_RS12425: BBR_RS12425 - tRNA-Thr, at 535,395 to 535,470 _RS12425 BBR_RS12430: BBR_RS12430 - glucose-6-phosphate isomerase, at 535,829 to 537,529 _RS12430 Position (kb) 535 536Strain fitness (log2 ratio) -1 0 1 2at 534.226 kb on - strand, within BBR_RS12415at 534.226 kb on - strand, within BBR_RS12415at 534.226 kb on - strand, within BBR_RS12415at 534.226 kb on - strand, within BBR_RS12415at 534.248 kb on + strand, within BBR_RS12415at 534.248 kb on + strand, within BBR_RS12415at 534.283 kb on + strand, within BBR_RS12415at 534.291 kb on - strand, within BBR_RS12415at 534.298 kb on + strand, within BBR_RS12415at 534.298 kb on + strand, within BBR_RS12415at 534.306 kb on - strand, within BBR_RS12415at 534.311 kb on - strand, within BBR_RS12415at 534.334 kb on - strand, within BBR_RS12415at 534.355 kb on - strand, within BBR_RS12415at 534.357 kb on + strand, within BBR_RS12415at 534.372 kb on + strand, within BBR_RS12415at 534.375 kb on - strand, within BBR_RS12415at 534.380 kb on - strand, within BBR_RS12415at 534.380 kb on - strand, within BBR_RS12415at 534.403 kb on + strand, within BBR_RS12415at 534.403 kb on + strand, within BBR_RS12415at 534.409 kb on - strand, within BBR_RS12415at 534.436 kb on - strand, within BBR_RS12415at 534.444 kb on - strand, within BBR_RS12415at 534.455 kb on + strand, within BBR_RS12415at 534.463 kb on - strand, within BBR_RS12415at 534.463 kb on - strand, within BBR_RS12415at 534.474 kb on - strand, within BBR_RS12415at 534.590 kb on + strand, within BBR_RS12415at 534.598 kb on - strand, within BBR_RS12415at 534.614 kb on + strand, within BBR_RS12415at 534.624 kb on + strand, within BBR_RS12415at 534.624 kb on + strand, within BBR_RS12415at 534.662 kb on + strand, within BBR_RS12415at 534.665 kb on + strand, within BBR_RS12415at 534.670 kb on - strand, within BBR_RS12415at 534.686 kb on - strand, within BBR_RS12415at 534.686 kb on - strand, within BBR_RS12415at 534.700 kb on - strand, within BBR_RS12415at 534.702 kb on + strand, within BBR_RS12415at 534.733 kb on + strand, within BBR_RS12415at 534.733 kb on + strand, within BBR_RS12415at 534.767 kb on + strand, within BBR_RS12415at 534.769 kb on + strand, within BBR_RS12415at 534.770 kb on - strand, within BBR_RS12415at 534.770 kb on - strand, within BBR_RS12415at 534.777 kb on + strand, within BBR_RS12415at 534.813 kb on + strand, within BBR_RS12415at 534.833 kb on + strand, within BBR_RS12415at 534.833 kb on + strand, within BBR_RS12415at 534.833 kb on + strand, within BBR_RS12415at 534.841 kb on - strand, within BBR_RS12415at 534.848 kb on - strand, within BBR_RS12415at 534.890 kb on - strandat 534.903 kb on - strandat 534.908 kb on - strandat 534.948 kb on - strandat 534.950 kb on - strandat 534.963 kb on + strandat 535.023 kb on + strandat 535.031 kb on + strandat 535.031 kb on - strandat 535.063 kb on - strandat 535.157 kb on + strandat 535.210 kb on - strandat 535.211 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.212 kb on + strandat 535.220 kb on - strandat 535.220 kb on - strandat 535.220 kb on - strandat 535.220 kb on - strandat 535.220 kb on - strandat 535.220 kb on - strandat 535.220 kb on - strandat 535.316 kb on + strandat 535.319 kb on - strandat 535.391 kb on - strandat 535.391 kb on - strandat 535.391 kb on - strandat 535.633 kb on + strandat 535.641 kb on - strandat 535.668 kb on + strandat 535.676 kb on - strandat 535.678 kb on - strandat 535.696 kb on - strandat 535.775 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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534,226 - BBR_RS12415 0.27 -0.2
534,226 - BBR_RS12415 0.27 -0.9
534,226 - BBR_RS12415 0.27 -0.5
534,226 - BBR_RS12415 0.27 +0.2
534,248 + BBR_RS12415 0.29 -0.1
534,248 + BBR_RS12415 0.29 -0.3
534,283 + BBR_RS12415 0.33 +0.1
534,291 - BBR_RS12415 0.34 -0.1
534,298 + BBR_RS12415 0.34 +0.1
534,298 + BBR_RS12415 0.34 -0.1
534,306 - BBR_RS12415 0.35 -0.1
534,311 - BBR_RS12415 0.36 +0.2
534,334 - BBR_RS12415 0.38 -0.2
534,355 - BBR_RS12415 0.40 +1.0
534,357 + BBR_RS12415 0.40 +0.4
534,372 + BBR_RS12415 0.42 +1.7
534,375 - BBR_RS12415 0.42 +0.4
534,380 - BBR_RS12415 0.43 +1.2
534,380 - BBR_RS12415 0.43 -0.4
534,403 + BBR_RS12415 0.45 -0.1
534,403 + BBR_RS12415 0.45 -0.2
534,409 - BBR_RS12415 0.46 -0.3
534,436 - BBR_RS12415 0.48 +0.2
534,444 - BBR_RS12415 0.49 +0.1
534,455 + BBR_RS12415 0.50 -0.6
534,463 - BBR_RS12415 0.51 +0.7
534,463 - BBR_RS12415 0.51 -1.2
534,474 - BBR_RS12415 0.52 -0.5
534,590 + BBR_RS12415 0.64 +0.2
534,598 - BBR_RS12415 0.64 -0.3
534,614 + BBR_RS12415 0.66 +0.6
534,624 + BBR_RS12415 0.67 +1.6
534,624 + BBR_RS12415 0.67 -0.3
534,662 + BBR_RS12415 0.71 -0.4
534,665 + BBR_RS12415 0.71 -0.2
534,670 - BBR_RS12415 0.72 +0.4
534,686 - BBR_RS12415 0.73 +2.0
534,686 - BBR_RS12415 0.73 +2.2
534,700 - BBR_RS12415 0.75 -0.2
534,702 + BBR_RS12415 0.75 +0.9
534,733 + BBR_RS12415 0.78 -1.2
534,733 + BBR_RS12415 0.78 -0.2
534,767 + BBR_RS12415 0.81 -1.0
534,769 + BBR_RS12415 0.81 -0.2
534,770 - BBR_RS12415 0.82 +0.0
534,770 - BBR_RS12415 0.82 -0.4
534,777 + BBR_RS12415 0.82 +0.7
534,813 + BBR_RS12415 0.86 -0.3
534,833 + BBR_RS12415 0.88 -0.1
534,833 + BBR_RS12415 0.88 +0.4
534,833 + BBR_RS12415 0.88 -0.1
534,841 - BBR_RS12415 0.89 -1.4
534,848 - BBR_RS12415 0.89 -0.8
534,890 - +0.3
534,903 - -1.2
534,908 - -0.6
534,948 - -0.4
534,950 - +2.1
534,963 + +0.3
535,023 + -0.8
535,031 + -0.2
535,031 - -0.5
535,063 - +2.1
535,157 + +0.7
535,210 - +1.9
535,211 + +0.7
535,212 + +0.7
535,212 + +2.0
535,212 + +1.1
535,212 + +0.6
535,212 + -1.1
535,212 + +0.4
535,212 + -0.0
535,212 + -0.4
535,212 + +1.5
535,212 + +0.3
535,212 + +0.4
535,220 - -0.5
535,220 - +0.2
535,220 - +1.4
535,220 - +1.1
535,220 - -0.1
535,220 - -0.2
535,220 - -0.2
535,316 + -0.5
535,319 - -1.2
535,391 - -0.1
535,391 - +0.5
535,391 - +0.3
535,633 + -0.4
535,641 - +0.5
535,668 + +1.7
535,676 - +1.9
535,678 - -0.2
535,696 - +0.7
535,775 + -0.7

Or see this region's nucleotide sequence