Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19540

Experiment: cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
2,166,559	+		BBR_RS19535	0.19	-2.0
2,166,559	+		BBR_RS19535	0.19	-3.2
2,166,559	+		BBR_RS19535	0.19	-1.8
2,166,559	+		BBR_RS19535	0.19	-1.6
2,166,562	-		BBR_RS19535	0.19	-2.6
2,166,569	+		BBR_RS19535	0.19	-2.1
2,166,592	+		BBR_RS19535	0.22	-1.2
2,166,602	+		BBR_RS19535	0.22	+0.3
2,166,602	+		BBR_RS19535	0.22	-2.1
2,166,602	+		BBR_RS19535	0.22	-1.4
2,166,602	+		BBR_RS19535	0.22	-1.5
2,166,602	+		BBR_RS19535	0.22	-0.9
2,166,605	+		BBR_RS19535	0.23	-3.8
2,166,605	+		BBR_RS19535	0.23	-3.0
2,166,615	-		BBR_RS19535	0.24	-1.5
2,166,617	+		BBR_RS19535	0.24	-0.6
2,166,625	-		BBR_RS19535	0.25	-0.1
2,166,625	-		BBR_RS19535	0.25	-1.2
2,166,625	-		BBR_RS19535	0.25	-1.6
2,166,625	-		BBR_RS19535	0.25	-3.1
2,166,625	-		BBR_RS19535	0.25	-3.9
2,166,625	-		BBR_RS19535	0.25	-1.8
2,166,627	+		BBR_RS19535	0.25	-2.2
2,166,628	+		BBR_RS19535	0.25	-0.6
2,166,635	-		BBR_RS19535	0.25	-2.0
2,166,638	+		BBR_RS19535	0.26	-1.7
2,166,648	+		BBR_RS19535	0.27	-2.4
2,166,680	+		BBR_RS19535	0.29	-1.6
2,166,691	+		BBR_RS19535	0.30	-2.5
2,166,738	+		BBR_RS19535	0.35	-1.5
2,166,746	+		BBR_RS19535	0.35	-1.5
2,166,746	+		BBR_RS19535	0.35	-1.7
2,166,746	+		BBR_RS19535	0.35	-1.8
2,166,746	-		BBR_RS19535	0.35	-0.5
2,166,751	+		BBR_RS19535	0.36	-3.4
2,166,751	+		BBR_RS19535	0.36	-1.0
2,166,754	-		BBR_RS19535	0.36	-4.0
2,166,754	-		BBR_RS19535	0.36	-2.1
2,166,754	-		BBR_RS19535	0.36	+0.0
2,166,756	+		BBR_RS19535	0.36	-1.2
2,166,759	+		BBR_RS19535	0.37	+0.0
2,166,759	+		BBR_RS19535	0.37	-2.6
2,166,759	-		BBR_RS19535	0.37	+0.1
2,166,759	-		BBR_RS19535	0.37	-1.6
2,166,781	+		BBR_RS19535	0.39	-1.1
2,166,781	+		BBR_RS19535	0.39	-0.9
2,166,781	+		BBR_RS19535	0.39	-1.3
2,166,781	+		BBR_RS19535	0.39	-1.9
2,166,789	-		BBR_RS19535	0.39	-2.7
2,166,802	+		BBR_RS19535	0.40	-2.1
2,166,813	-		BBR_RS19535	0.41	-2.9
2,166,825	+		BBR_RS19535	0.42	-1.3
2,166,830	+		BBR_RS19535	0.43	-0.9
2,166,830	+		BBR_RS19535	0.43	-0.8
2,166,830	+		BBR_RS19535	0.43	-1.3
2,166,830	+		BBR_RS19535	0.43	-3.7
2,166,830	+		BBR_RS19535	0.43	-0.5
2,166,830	+		BBR_RS19535	0.43	-0.9
2,166,838	-		BBR_RS19535	0.44	-1.4
2,166,838	-		BBR_RS19535	0.44	-1.6
2,166,838	-		BBR_RS19535	0.44	-0.9
2,166,838	-		BBR_RS19535	0.44	-1.0
2,166,838	-		BBR_RS19535	0.44	-1.4
2,166,838	-		BBR_RS19535	0.44	-1.7
2,166,838	-		BBR_RS19535	0.44	-1.5
2,166,858	-		BBR_RS19535	0.45	-0.6
2,166,860	-		BBR_RS19535	0.46	-2.0
2,166,862	+		BBR_RS19535	0.46	-1.8
2,166,867	+		BBR_RS19535	0.46	-2.6
2,166,867	+		BBR_RS19535	0.46	-1.2
2,166,867	+		BBR_RS19535	0.46	-2.3
2,166,870	-		BBR_RS19535	0.47	-2.7
2,166,875	-		BBR_RS19535	0.47	-2.5
2,166,875	-		BBR_RS19535	0.47	-2.6
2,166,878	+		BBR_RS19535	0.47	-1.2
2,166,893	-		BBR_RS19535	0.49	-0.8
2,166,904	-		BBR_RS19535	0.50	-1.4
2,166,919	-		BBR_RS19535	0.51	-1.1
2,166,940	+		BBR_RS19535	0.53	-0.9
2,166,940	+		BBR_RS19535	0.53	-2.5
2,166,948	-		BBR_RS19535	0.54	-1.0
2,166,948	-		BBR_RS19535	0.54	-0.3
2,166,988	-		BBR_RS19535	0.57	-1.8
2,166,998	+		BBR_RS19535	0.58	+0.5
2,167,005	-		BBR_RS19535	0.59	-1.9
2,167,005	-		BBR_RS19535	0.59	-1.9
2,167,007	-		BBR_RS19535	0.59	-1.8
2,167,009	+		BBR_RS19535	0.59	-0.3
2,167,028	+		BBR_RS19535	0.61	-2.7
2,167,028	+		BBR_RS19535	0.61	-3.3
2,167,029	-		BBR_RS19535	0.61	-2.2
2,167,032	+		BBR_RS19535	0.61	-2.2
2,167,032	+		BBR_RS19535	0.61	-2.6
2,167,034	+		BBR_RS19535	0.61	-0.5
2,167,034	-		BBR_RS19535	0.61	-1.2
2,167,040	-		BBR_RS19535	0.62	-1.7
2,167,040	-		BBR_RS19535	0.62	-3.0
2,167,042	+		BBR_RS19535	0.62	-1.9
2,167,048	-		BBR_RS19535	0.63	-1.3
2,167,048	-		BBR_RS19535	0.63	-1.4
2,167,052	+		BBR_RS19535	0.63	-1.6
2,167,052	+		BBR_RS19535	0.63	-3.0
2,167,052	+		BBR_RS19535	0.63	-2.1
2,167,052	+		BBR_RS19535	0.63	-0.7
2,167,052	+		BBR_RS19535	0.63	-2.3
2,167,052	+		BBR_RS19535	0.63	-2.0
2,167,060	-		BBR_RS19535	0.64	-1.8
2,167,060	-		BBR_RS19535	0.64	-1.5
2,167,078	+		BBR_RS19535	0.65	-0.5
2,167,080	+		BBR_RS19535	0.65	-2.5
2,167,088	+		BBR_RS19535	0.66	-2.4
2,167,090	+		BBR_RS19535	0.66	-0.7
2,167,090	+		BBR_RS19535	0.66	-0.8
2,167,096	-		BBR_RS19535	0.67	-3.8
2,167,098	-		BBR_RS19535	0.67	-0.3
2,167,102	+		BBR_RS19535	0.67	-1.1
2,167,102	+		BBR_RS19535	0.67	-1.7
2,167,114	+		BBR_RS19535	0.68	-0.4
2,167,149	+		BBR_RS19535	0.72	-0.4
2,167,159	-		BBR_RS19535	0.73	-0.5
2,167,174	-		BBR_RS19535	0.74	-2.4
2,167,174	-		BBR_RS19535	0.74	-2.1
2,167,174	-		BBR_RS19535	0.74	-1.6
2,167,179	-		BBR_RS19535	0.74	-1.5
2,167,183	+		BBR_RS19535	0.75	-1.8
2,167,200	+		BBR_RS19535	0.76	-1.8
2,167,202	-		BBR_RS19535	0.76	-0.7
2,167,222	+		BBR_RS19535	0.78	+0.4
2,167,239	-		BBR_RS19535	0.80	-2.3
2,167,249	+		BBR_RS19535	0.81	-0.9
2,167,249	+		BBR_RS19535	0.81	+0.0
2,167,257	-		BBR_RS19535	0.81	-1.3
2,167,285	+		BBR_RS19535	0.84	-1.9
2,167,286	+		BBR_RS19535	0.84	-2.1
2,167,286	-		BBR_RS19535	0.84	-1.5
2,167,296	-		BBR_RS19535	0.85	-1.1
2,167,318	+		BBR_RS19535	0.87	-1.9
2,167,318	+		BBR_RS19535	0.87	-2.5
2,167,318	+		BBR_RS19535	0.87	-2.5
2,167,362	+				-0.3
2,167,370	-				-0.7
2,167,370	-				-3.0
2,167,370	-				-1.4
2,167,370	-				-2.5
2,167,375	-				-1.8
2,167,403	+				-1.0
2,167,437	+				-1.6
2,167,445	+				+0.2
2,167,445	-				-1.1
2,167,445	-				-1.2
2,167,451	-				-2.4
2,167,451	-				-1.1
2,167,453	-				-0.5
2,167,453	-				-0.7
2,167,453	-				-1.4
2,167,453	-				-0.1
2,167,455	-				-1.9
2,167,458	+				+0.4
2,167,467	-				+0.2
2,167,490	+				-0.0
2,167,492	+				-0.6
2,167,492	+				-2.0
2,167,501	+				-1.0
2,167,514	+				+0.6
2,167,514	+				+0.2
2,167,514	+				+0.6
2,167,514	+				+0.7
2,167,522	+				+0.4
2,167,522	-				+0.1
2,167,522	-				-2.0
2,167,522	-				-1.1
2,167,522	-				+1.2
2,167,533	+				-0.3
2,167,539	-				-0.1
2,167,547	+				+0.5
2,167,547	+				-1.1
2,167,547	+				+0.2
2,167,548	+				-0.4
2,167,554	-				-0.5
2,167,555	-				+0.3
2,167,556	+				+0.0
2,167,557	+				-0.6
2,167,557	+				-0.2
2,167,563	-				+0.8
2,167,563	-				-0.7
2,167,564	-				+0.5
2,167,585	+				-1.7
2,167,593	-				-1.0
2,167,625	-				-0.1
2,167,644	-				-0.6
2,167,704	+		BBR_RS19540	0.11	-0.7
2,167,710	-		BBR_RS19540	0.11	-0.7
2,167,713	+		BBR_RS19540	0.12	+1.4
2,167,721	-		BBR_RS19540	0.12	+1.1
2,167,726	+		BBR_RS19540	0.13	-1.6
2,167,734	-		BBR_RS19540	0.13	-1.4
2,167,742	-		BBR_RS19540	0.14	+0.5
2,167,790	-		BBR_RS19540	0.18	-0.8
2,167,868	-		BBR_RS19540	0.23	+0.7
2,167,868	-		BBR_RS19540	0.23	-0.8
2,167,877	+		BBR_RS19540	0.24	-1.2
2,167,878	-		BBR_RS19540	0.24	+0.0
2,167,904	-		BBR_RS19540	0.26	-0.7
2,167,955	+		BBR_RS19540	0.30	+0.0
2,168,037	-		BBR_RS19540	0.36	-0.8
2,168,046	+		BBR_RS19540	0.37	-0.2
2,168,205	-		BBR_RS19540	0.49	-0.5
2,168,205	-		BBR_RS19540	0.49	+0.4
2,168,255	-		BBR_RS19540	0.53	-0.9
2,168,257	-		BBR_RS19540	0.53	+0.0
2,168,304	+		BBR_RS19540	0.57	-0.1
2,168,305	-		BBR_RS19540	0.57	+0.1
2,168,312	-		BBR_RS19540	0.57	-1.1
2,168,312	-		BBR_RS19540	0.57	-0.7
2,168,338	+		BBR_RS19540	0.59	+0.4
2,168,354	-		BBR_RS19540	0.60	-0.3
2,168,473	-		BBR_RS19540	0.69	-0.7
2,168,496	+		BBR_RS19540	0.71	+0.4
2,168,504	-		BBR_RS19540	0.72	-0.3
2,168,526	+		BBR_RS19540	0.73	-0.1
2,168,650	-		BBR_RS19540	0.83	+0.1
2,168,806	-				-0.5
2,168,808	+				+0.5
2,168,871	+				-2.9
2,168,907	+				+0.0
2,168,907	+				-0.4
2,168,915	-				-0.5
2,168,932	+				-0.3
2,168,932	+				-0.2
2,168,935	+				+0.0
2,168,957	-				+0.2
2,168,957	-				-0.4
2,168,981	-				+0.2
2,168,983	-				-1.0
2,168,996	-				+0.4
2,168,996	-				+0.1
2,169,003	+				-0.3
2,169,003	+				-0.5
2,169,011	-				-0.6
2,169,025	+				-0.9
2,169,026	+				-0.8
2,169,026	+				+0.4
2,169,034	-				-0.0
2,169,046	-				-0.2
2,169,063	+				-0.7
2,169,070	-				-1.8
2,169,075	-				+1.1
2,169,083	-				+0.5
2,169,102	-				-0.7
2,169,108	+				-1.5
2,169,108	+				-0.0
2,169,108	+				-0.2
2,169,108	+				-0.9
2,169,108	+				+0.4
2,169,108	+				-0.4
2,169,113	+				-0.2
2,169,116	-				+0.6
2,169,127	+		BBR_RS19545	0.12	+0.9
2,169,169	+		BBR_RS19545	0.20	-0.1
2,169,181	-		BBR_RS19545	0.23	-0.1
2,169,182	-		BBR_RS19545	0.23	+0.6
2,169,182	-		BBR_RS19545	0.23	-0.3
2,169,182	-		BBR_RS19545	0.23	+0.3
2,169,182	-		BBR_RS19545	0.23	+0.3
2,169,186	-		BBR_RS19545	0.24	+0.1
2,169,193	+		BBR_RS19545	0.25	+0.1
2,169,194	-		BBR_RS19545	0.25	-0.6
2,169,216	-		BBR_RS19545	0.30	-0.3
2,169,217	-		BBR_RS19545	0.30	+1.3
2,169,230	+		BBR_RS19545	0.33	+0.8
2,169,260	-		BBR_RS19545	0.39	+0.3
2,169,287	+		BBR_RS19545	0.44	+0.2
2,169,287	-		BBR_RS19545	0.44	+0.3
2,169,290	-		BBR_RS19545	0.45	-0.7
2,169,290	-		BBR_RS19545	0.45	+0.4
2,169,290	-		BBR_RS19545	0.45	-0.0
2,169,292	-		BBR_RS19545	0.45	+0.6
2,169,295	-		BBR_RS19545	0.46	-1.0
2,169,295	-		BBR_RS19545	0.46	+0.2
2,169,313	+		BBR_RS19545	0.49	-0.7
2,169,318	+		BBR_RS19545	0.50	+0.3
2,169,318	+		BBR_RS19545	0.50	+0.4
2,169,326	-		BBR_RS19545	0.52	+0.5
2,169,326	-		BBR_RS19545	0.52	+0.4
2,169,328	-		BBR_RS19545	0.52	+1.1
2,169,338	+		BBR_RS19545	0.54	-1.7
2,169,339	+		BBR_RS19545	0.55	-0.4
2,169,346	-		BBR_RS19545	0.56	+0.0
2,169,348	+		BBR_RS19545	0.56	-0.4
2,169,348	+		BBR_RS19545	0.56	+1.4
2,169,373	+		BBR_RS19545	0.61	+0.1
2,169,374	-		BBR_RS19545	0.62	+1.1
2,169,391	-		BBR_RS19545	0.65	-2.4
2,169,444	+		BBR_RS19545	0.76	-1.9
2,169,457	+		BBR_RS19545	0.78	-1.1
2,169,460	+		BBR_RS19545	0.79	+1.2
2,169,460	+		BBR_RS19545	0.79	+1.3
2,169,460	+		BBR_RS19545	0.79	+1.2
2,169,460	+		BBR_RS19545	0.79	+0.0
2,169,460	+		BBR_RS19545	0.79	-0.3
2,169,460	+		BBR_RS19545	0.79	-0.3
2,169,460	+		BBR_RS19545	0.79	+0.5
2,169,462	+		BBR_RS19545	0.79	+0.1
2,169,463	-		BBR_RS19545	0.80	+0.1
2,169,463	-		BBR_RS19545	0.80	-0.2
2,169,468	-		BBR_RS19545	0.81	-1.1
2,169,468	-		BBR_RS19545	0.81	+0.2
2,169,468	-		BBR_RS19545	0.81	-0.2
2,169,483	+		BBR_RS19545	0.84	+0.5
2,169,483	+		BBR_RS19545	0.84	+0.0
2,169,483	+		BBR_RS19545	0.84	+0.1
2,169,483	+		BBR_RS19545	0.84	-1.1
2,169,483	+		BBR_RS19545	0.84	+1.0
2,169,483	+		BBR_RS19545	0.84	-0.2
2,169,491	-		BBR_RS19545	0.85	-0.2
2,169,507	+		BBR_RS19545	0.88	-0.6
2,169,518	+				+0.1
2,169,526	-				+0.5
2,169,526	-				+0.8
2,169,533	-				+0.7
2,169,533	-				+0.5
2,169,533	-				-0.4
2,169,584	+				+0.9
2,169,604	-				+1.4
2,169,611	+		BBR_RS19550	0.10	+0.8
2,169,613	-		BBR_RS19550	0.11	+3.6
2,169,617	+		BBR_RS19550	0.11	+0.3
2,169,618	+		BBR_RS19550	0.12	+0.4
2,169,618	+		BBR_RS19550	0.12	+0.2
2,169,624	+		BBR_RS19550	0.13	+0.8
2,169,629	+		BBR_RS19550	0.14	+0.0
2,169,644	-		BBR_RS19550	0.17	+0.7
2,169,665	+		BBR_RS19550	0.21	-0.3
2,169,666	-		BBR_RS19550	0.21	+0.5
2,169,673	-		BBR_RS19550	0.22	+0.3
2,169,680	-		BBR_RS19550	0.24	+0.3
2,169,699	+		BBR_RS19550	0.28	+0.3
2,169,707	-		BBR_RS19550	0.29	+0.2
2,169,738	-		BBR_RS19550	0.35	+0.2
2,169,744	+		BBR_RS19550	0.37	+0.5
2,169,744	+		BBR_RS19550	0.37	+0.8
2,169,744	+		BBR_RS19550	0.37	+0.7
2,169,762	-		BBR_RS19550	0.40	-0.1
2,169,762	-		BBR_RS19550	0.40	-0.0
2,169,769	+		BBR_RS19550	0.41	+0.6
2,169,769	+		BBR_RS19550	0.41	+1.6
2,169,769	+		BBR_RS19550	0.41	+0.5
2,169,772	-		BBR_RS19550	0.42	+0.5
2,169,803	+		BBR_RS19550	0.48	-0.3
2,169,803	+		BBR_RS19550	0.48	-0.1
2,169,811	-		BBR_RS19550	0.50	+0.1
2,169,811	-		BBR_RS19550	0.50	+0.2
2,169,812	-		BBR_RS19550	0.50	-0.7
2,169,820	+		BBR_RS19550	0.52	+0.1
2,169,820	-		BBR_RS19550	0.52	+0.3
2,169,839	+		BBR_RS19550	0.55	+0.8
2,169,839	+		BBR_RS19550	0.55	-0.1
2,169,839	+		BBR_RS19550	0.55	-0.7
2,169,839	+		BBR_RS19550	0.55	+0.2
2,169,844	+		BBR_RS19550	0.56	+0.3
2,169,844	+		BBR_RS19550	0.56	+0.3
2,169,844	+		BBR_RS19550	0.56	+0.6
2,169,844	+		BBR_RS19550	0.56	+0.3
2,169,847	-		BBR_RS19550	0.57	+0.4
2,169,847	-		BBR_RS19550	0.57	+0.5
2,169,847	-		BBR_RS19550	0.57	+0.5
2,169,852	-		BBR_RS19550	0.58	+0.6
2,169,852	-		BBR_RS19550	0.58	-0.4
2,169,852	-		BBR_RS19550	0.58	-0.9
2,169,852	-		BBR_RS19550	0.58	-0.3
2,169,852	-		BBR_RS19550	0.58	+0.5
2,169,852	-		BBR_RS19550	0.58	+0.7
2,169,857	-		BBR_RS19550	0.59	-0.1
2,169,864	+		BBR_RS19550	0.60	+0.8
2,169,864	+		BBR_RS19550	0.60	+0.1
2,169,864	+		BBR_RS19550	0.60	-1.3
2,169,864	+		BBR_RS19550	0.60	-0.3
2,169,872	-		BBR_RS19550	0.62	-0.4
2,169,872	-		BBR_RS19550	0.62	-0.3