Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18195

Experiment: cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,867,822	+				+0.1
1,867,830	-				-0.1
1,867,833	+				-0.1
1,867,833	+				-2.1
1,867,833	+				+0.6
1,867,841	-				-0.5
1,867,854	-				+0.3
1,867,859	-				-0.1
1,867,915	-				-0.3
1,867,943	+				+0.1
1,867,948	+				+0.6
1,867,961	-				+0.2
1,867,962	+				+1.2
1,867,980	-				+1.1
1,867,980	-				+0.2
1,867,981	+				-0.5
1,867,989	-				+0.3
1,867,995	-				-0.5
1,867,996	+				+0.4
1,868,018	-		BBR_RS18195	0.11	+0.3
1,868,064	+		BBR_RS18195	0.14	+1.9
1,868,069	+		BBR_RS18195	0.14	-0.5
1,868,069	+		BBR_RS18195	0.14	-0.3
1,868,069	+		BBR_RS18195	0.14	+1.1
1,868,077	-		BBR_RS18195	0.15	+0.2
1,868,077	-		BBR_RS18195	0.15	+0.1
1,868,132	-		BBR_RS18195	0.18	-0.1
1,868,185	-		BBR_RS18195	0.22	-1.9
1,868,185	-		BBR_RS18195	0.22	-1.2
1,868,190	-		BBR_RS18195	0.22	+0.3
1,868,190	-		BBR_RS18195	0.22	-0.7
1,868,190	-		BBR_RS18195	0.22	+0.9
1,868,228	-		BBR_RS18195	0.25	+0.1
1,868,228	-		BBR_RS18195	0.25	+0.2
1,868,231	+		BBR_RS18195	0.25	-1.8
1,868,231	+		BBR_RS18195	0.25	-2.2
1,868,236	+		BBR_RS18195	0.25	+0.9
1,868,239	-		BBR_RS18195	0.26	-1.3
1,868,239	-		BBR_RS18195	0.26	-0.4
1,868,249	-		BBR_RS18195	0.26	-0.3
1,868,291	-		BBR_RS18195	0.29	-0.8
1,868,324	+		BBR_RS18195	0.31	+1.0
1,868,351	+		BBR_RS18195	0.33	-1.7
1,868,361	+		BBR_RS18195	0.34	-1.0
1,868,376	-		BBR_RS18195	0.35	+0.5
1,868,388	+		BBR_RS18195	0.36	-0.8
1,868,396	-		BBR_RS18195	0.36	-1.3
1,868,396	-		BBR_RS18195	0.36	-0.5
1,868,411	-		BBR_RS18195	0.37	+1.3
1,868,440	+		BBR_RS18195	0.39	-2.0
1,868,493	+		BBR_RS18195	0.43	-1.3
1,868,494	-		BBR_RS18195	0.43	+0.0
1,868,494	-		BBR_RS18195	0.43	-2.1
1,868,496	-		BBR_RS18195	0.43	-0.2
1,868,496	-		BBR_RS18195	0.43	+0.4
1,868,499	-		BBR_RS18195	0.43	-0.5
1,868,517	-		BBR_RS18195	0.44	-3.5
1,868,517	-		BBR_RS18195	0.44	-1.5
1,868,540	-		BBR_RS18195	0.46	+0.3
1,868,543	-		BBR_RS18195	0.46	-2.6
1,868,593	-		BBR_RS18195	0.49	-2.0
1,868,642	-		BBR_RS18195	0.53	+0.4
1,868,646	-		BBR_RS18195	0.53	-2.8
1,868,661	-		BBR_RS18195	0.54	-1.9
1,868,714	-		BBR_RS18195	0.57	+0.4
1,868,718	-		BBR_RS18195	0.58	-2.6
1,868,739	+		BBR_RS18195	0.59	-0.8
1,868,739	+		BBR_RS18195	0.59	+0.3
1,868,740	-		BBR_RS18195	0.59	+0.1
1,868,747	-		BBR_RS18195	0.60	-4.3
1,868,753	-		BBR_RS18195	0.60	-1.0
1,868,757	+		BBR_RS18195	0.60	+0.3
1,868,757	-		BBR_RS18195	0.60	-3.8
1,868,765	-		BBR_RS18195	0.61	+0.5
1,868,818	-		BBR_RS18195	0.64	-1.4
1,868,818	-		BBR_RS18195	0.64	-0.7
1,868,860	-		BBR_RS18195	0.67	-2.2
1,868,903	+		BBR_RS18195	0.70	-0.8
1,868,903	+		BBR_RS18195	0.70	-0.1
1,868,906	-		BBR_RS18195	0.70	-1.5
1,868,911	-		BBR_RS18195	0.70	-2.6
1,868,937	-		BBR_RS18195	0.72	-2.2
1,868,938	+		BBR_RS18195	0.72	-1.1
1,868,973	+		BBR_RS18195	0.75	+0.9
1,869,004	-		BBR_RS18195	0.77	+0.1
1,869,014	-		BBR_RS18195	0.77	-1.7
1,869,033	-		BBR_RS18195	0.79	-2.9
1,869,059	+		BBR_RS18195	0.80	+0.0
1,869,059	+		BBR_RS18195	0.80	-0.0
1,869,183	-		BBR_RS18195	0.89	-1.3
1,869,183	-		BBR_RS18195	0.89	-3.2
1,869,183	-		BBR_RS18195	0.89	-1.8
1,869,190	-		BBR_RS18195	0.89	-1.6
1,869,193	-		BBR_RS18195	0.89	+1.4
1,869,204	-				-1.0
1,869,214	-				-0.0
1,869,214	-				-0.5
1,869,216	+				-1.6
1,869,228	+				-0.6
1,869,236	-				-0.7
1,869,251	-				-1.7
1,869,270	-				+0.8
1,869,276	-				-0.8
1,869,276	-				-2.5
1,869,312	+				-0.7
1,869,367	-				+0.3
1,869,367	-				+0.3
1,869,380	+				+0.5
1,869,380	+				+0.6
1,869,442	+				-0.2
1,869,442	+				+0.6
1,869,454	+				+0.1
1,869,462	-				+0.8
1,869,564	+		BBR_RS18200	0.11	-1.2
1,869,572	-		BBR_RS18200	0.12	-0.8
1,869,603	-		BBR_RS18200	0.14	-0.0
1,869,610	+		BBR_RS18200	0.14	+0.2
1,869,617	+		BBR_RS18200	0.14	-1.8
1,869,625	-		BBR_RS18200	0.15	-0.4
1,869,635	+		BBR_RS18200	0.15	-0.2
1,869,643	-		BBR_RS18200	0.16	+1.0
1,869,653	+		BBR_RS18200	0.17	+0.3
1,869,675	+		BBR_RS18200	0.18	-0.3
1,869,675	+		BBR_RS18200	0.18	+1.1
1,869,675	+		BBR_RS18200	0.18	+0.7
1,869,675	+		BBR_RS18200	0.18	+0.4
1,869,680	+		BBR_RS18200	0.18	+0.5
1,869,683	-		BBR_RS18200	0.18	+0.3
1,869,688	-		BBR_RS18200	0.19	+0.6
1,869,709	+		BBR_RS18200	0.20	-1.2
1,869,717	-		BBR_RS18200	0.20	+0.3
1,869,717	-		BBR_RS18200	0.20	-1.7
1,869,717	-		BBR_RS18200	0.20	-0.2
1,869,727	-		BBR_RS18200	0.21	-1.0
1,869,731	+		BBR_RS18200	0.21	-0.7
1,869,731	+		BBR_RS18200	0.21	-1.3
1,869,738	-		BBR_RS18200	0.22	+0.2
1,869,739	-		BBR_RS18200	0.22	-0.4
1,869,760	-		BBR_RS18200	0.23	+0.7
1,869,830	+		BBR_RS18200	0.27	-0.1
1,869,834	-		BBR_RS18200	0.27	+0.6
1,869,838	-		BBR_RS18200	0.28	-0.4
1,869,850	+		BBR_RS18200	0.28	+0.4
1,869,912	-		BBR_RS18200	0.32	+0.7
1,869,912	-		BBR_RS18200	0.32	+0.3
1,869,917	-		BBR_RS18200	0.32	-0.4
1,869,939	+		BBR_RS18200	0.34	+1.0
1,870,012	+		BBR_RS18200	0.38	-0.1
1,870,012	+		BBR_RS18200	0.38	+0.7
1,870,020	-		BBR_RS18200	0.38	-0.4
1,870,020	-		BBR_RS18200	0.38	+0.4
1,870,071	+		BBR_RS18200	0.42	+0.4
1,870,079	-		BBR_RS18200	0.42	+0.3
1,870,156	-		BBR_RS18200	0.47	-0.5
1,870,182	-		BBR_RS18200	0.48	+0.0
1,870,182	-		BBR_RS18200	0.48	-0.4
1,870,184	-		BBR_RS18200	0.48	-0.7
1,870,203	-		BBR_RS18200	0.49	-0.7
1,870,203	-		BBR_RS18200	0.49	-0.1
1,870,207	+		BBR_RS18200	0.50	+0.3
1,870,226	+		BBR_RS18200	0.51	+0.4
1,870,235	-		BBR_RS18200	0.51	+0.5
1,870,244	+		BBR_RS18200	0.52	+0.4
1,870,244	+		BBR_RS18200	0.52	+1.2
1,870,259	-		BBR_RS18200	0.53	-0.1
1,870,270	-		BBR_RS18200	0.53	+1.9
1,870,317	-		BBR_RS18200	0.56	-0.1
1,870,317	-		BBR_RS18200	0.56	+0.9
1,870,333	-		BBR_RS18200	0.57	-0.8
1,870,346	+		BBR_RS18200	0.58	-0.9