Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17980

Experiment: cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,817,804	+		BBR_RS17970	0.74	-1.9
1,817,804	+		BBR_RS17970	0.74	-4.2
1,817,804	+		BBR_RS17970	0.74	-3.4
1,817,842	+		BBR_RS17970	0.78	-3.5
1,817,878	+		BBR_RS17970	0.81	-1.5
1,817,878	+		BBR_RS17970	0.81	-3.2
1,817,878	+		BBR_RS17970	0.81	-1.2
1,817,886	-		BBR_RS17970	0.82	-3.6
1,817,886	-		BBR_RS17970	0.82	-1.9
1,817,886	-		BBR_RS17970	0.82	-3.2
1,817,886	-		BBR_RS17970	0.82	-2.9
1,817,886	-		BBR_RS17970	0.82	-3.3
1,817,886	-		BBR_RS17970	0.82	-2.2
1,817,886	-		BBR_RS17970	0.82	-3.1
1,817,928	+		BBR_RS17970	0.86	-1.9
1,817,935	-		BBR_RS17970	0.87	-2.9
1,817,948	+		BBR_RS17970	0.88	-2.6
1,817,956	-		BBR_RS17970	0.89	-1.1
1,817,957	+		BBR_RS17970	0.89	-1.3
1,817,965	+		BBR_RS17970	0.90	-2.8
1,818,107	+				-0.9
1,818,113	-				+0.2
1,818,113	-				+0.7
1,818,115	-				+0.3
1,818,129	-				+0.7
1,818,138	-				+0.7
1,818,153	-				+1.1
1,818,177	-				+0.1
1,818,186	+				+0.6
1,818,218	-		BBR_RS17975	0.14	+1.2
1,818,241	+		BBR_RS17975	0.19	+0.9
1,818,266	-		BBR_RS17975	0.24	+1.0
1,818,268	-		BBR_RS17975	0.24	-0.4
1,818,268	-		BBR_RS17975	0.24	-0.6
1,818,268	-		BBR_RS17975	0.24	+0.1
1,818,314	+		BBR_RS17975	0.34	+0.3
1,818,426	+		BBR_RS17975	0.58	-0.5
1,818,428	+		BBR_RS17975	0.58	+0.1
1,818,546	-		BBR_RS17975	0.83	-0.4
1,818,571	+		BBR_RS17975	0.88	-0.3
1,818,577	-		BBR_RS17975	0.89	-0.0
1,818,579	-				+0.2
1,818,607	+				+0.0
1,818,630	+				-0.6
1,818,638	-				+0.5
1,818,638	-				+0.9
1,818,638	-				-0.4
1,818,638	-				+0.8
1,818,731	+				+1.2
1,818,739	-				+0.0
1,818,750	+				+0.0
1,818,750	+				-0.5
1,818,774	-				-1.5
1,818,782	+				-0.0
1,818,791	-				-1.0
1,818,797	+				-1.0
1,818,854	+		BBR_RS17980	0.17	+0.5
1,818,854	+		BBR_RS17980	0.17	+0.8
1,818,862	-		BBR_RS17980	0.18	-0.2
1,818,862	-		BBR_RS17980	0.18	-0.2
1,818,862	-		BBR_RS17980	0.18	-0.1
1,818,862	-		BBR_RS17980	0.18	-1.1
1,818,864	+		BBR_RS17980	0.18	-1.0
1,818,864	+		BBR_RS17980	0.18	+0.1
1,818,864	+		BBR_RS17980	0.18	-0.4
1,818,885	+		BBR_RS17980	0.22	-0.6
1,818,929	+		BBR_RS17980	0.30	+0.4
1,818,937	-		BBR_RS17980	0.31	+0.6
1,818,952	-		BBR_RS17980	0.34	+0.9
1,819,014	-		BBR_RS17980	0.45	-0.4
1,819,020	+		BBR_RS17980	0.46	-0.4
1,819,089	+		BBR_RS17980	0.58	+1.3
1,819,089	+		BBR_RS17980	0.58	+1.2
1,819,143	+		BBR_RS17980	0.68	+0.4
1,819,144	-		BBR_RS17980	0.68	-1.0
1,819,146	+		BBR_RS17980	0.68	-0.2
1,819,159	+		BBR_RS17980	0.71	+0.0
1,819,159	+		BBR_RS17980	0.71	-1.0
1,819,159	+		BBR_RS17980	0.71	-0.4
1,819,179	+		BBR_RS17980	0.74	+0.3
1,819,217	+		BBR_RS17980	0.81	-1.0
1,819,217	+		BBR_RS17980	0.81	+0.9
1,819,237	+		BBR_RS17980	0.85	-0.0
1,819,237	-		BBR_RS17980	0.85	+1.1
1,819,237	-		BBR_RS17980	0.85	+0.2
1,819,258	+		BBR_RS17980	0.88	+0.0
1,819,266	-		BBR_RS17980	0.90	+0.4
1,819,282	+				+0.8
1,819,282	+				-0.6
1,819,282	+				+0.4
1,819,290	-				-0.2
1,819,304	+				+0.1
1,819,327	+				+0.0
1,819,377	+				-0.5
1,819,383	+				-0.5
1,819,394	+				+0.2
1,819,394	+				-0.0
1,819,470	+				-0.4
1,819,470	-				+0.8
1,819,478	-				-0.1
1,819,501	-				+0.2
1,819,518	+				+1.5
1,819,518	+				+1.2
1,819,521	+				+0.3
1,819,524	-				+1.1
1,819,525	+				-0.2
1,819,526	-				+0.3
1,819,534	+				+0.2
1,819,547	-				+1.6
1,819,578	-				-0.2
1,819,578	-				+0.9
1,819,602	-				+0.2
1,819,614	-				+0.8
1,819,629	+				-0.1
1,819,631	-				+0.6
1,819,634	+				+0.4
1,819,635	+				-1.8
1,819,635	+				-0.1
1,819,635	+				+1.7
1,819,642	-				-0.6
1,819,648	-				+0.9
1,819,740	+		BBR_RS17985	0.10	-0.1
1,819,747	+		BBR_RS17985	0.10	-0.2
1,819,755	-		BBR_RS17985	0.10	-0.3
1,819,755	-		BBR_RS17985	0.10	-0.3
1,819,808	+		BBR_RS17985	0.12	+3.3
1,819,811	-		BBR_RS17985	0.12	+1.2
1,819,811	-		BBR_RS17985	0.12	+0.5
1,819,811	-		BBR_RS17985	0.12	+1.0
1,819,838	+		BBR_RS17985	0.13	+0.3
1,819,848	+		BBR_RS17985	0.13	+0.5
1,819,848	+		BBR_RS17985	0.13	+1.6
1,819,848	+		BBR_RS17985	0.13	-0.4
1,819,872	+		BBR_RS17985	0.13	-3.2
1,819,885	+		BBR_RS17985	0.14	-1.0
1,819,897	-		BBR_RS17985	0.14	-0.1
1,819,922	-		BBR_RS17985	0.15	+0.3
1,819,929	+		BBR_RS17985	0.15	+0.1
1,819,934	+		BBR_RS17985	0.15	+0.9
1,819,939	+		BBR_RS17985	0.15	-0.1
1,819,944	+		BBR_RS17985	0.15	-0.1
1,819,947	-		BBR_RS17985	0.15	+0.0
1,819,948	-		BBR_RS17985	0.15	-0.1
1,819,952	-		BBR_RS17985	0.15	+1.1
1,819,952	-		BBR_RS17985	0.15	+0.9
1,819,967	+		BBR_RS17985	0.16	-0.7
1,819,983	-		BBR_RS17985	0.16	+0.2
1,819,988	+		BBR_RS17985	0.16	+0.2
1,819,998	+		BBR_RS17985	0.16	+1.6
1,819,998	-		BBR_RS17985	0.16	+0.8
1,820,000	+		BBR_RS17985	0.17	+0.3
1,820,007	-		BBR_RS17985	0.17	-0.1
1,820,025	+		BBR_RS17985	0.17	+0.8
1,820,032	+		BBR_RS17985	0.17	+0.8
1,820,071	-		BBR_RS17985	0.18	+1.1
1,820,080	+		BBR_RS17985	0.18	+0.4
1,820,103	+		BBR_RS17985	0.19	-0.1
1,820,111	-		BBR_RS17985	0.19	+0.6
1,820,119	-		BBR_RS17985	0.19	-2.0
1,820,119	-		BBR_RS17985	0.19	-1.5
1,820,145	+		BBR_RS17985	0.20	+0.9
1,820,185	+		BBR_RS17985	0.21	+0.4
1,820,193	-		BBR_RS17985	0.21	+0.3
1,820,193	-		BBR_RS17985	0.21	-1.9
1,820,193	-		BBR_RS17985	0.21	+0.5
1,820,198	-		BBR_RS17985	0.21	+0.2
1,820,202	+		BBR_RS17985	0.21	+0.1
1,820,203	-		BBR_RS17985	0.22	-0.4
1,820,218	+		BBR_RS17985	0.22	-0.6
1,820,241	-		BBR_RS17985	0.22	-1.1
1,820,253	-		BBR_RS17985	0.23	-1.6
1,820,255	+		BBR_RS17985	0.23	+0.6
1,820,255	+		BBR_RS17985	0.23	-2.1
1,820,263	-		BBR_RS17985	0.23	+0.5
1,820,264	-		BBR_RS17985	0.23	-0.4