Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17970

Experiment: cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,816,022	-		BBR_RS17965	0.26	-0.4
1,816,047	-		BBR_RS17965	0.28	+0.1
1,816,061	+		BBR_RS17965	0.29	-0.8
1,816,061	+		BBR_RS17965	0.29	-0.7
1,816,067	-		BBR_RS17965	0.30	-0.0
1,816,080	+		BBR_RS17965	0.31	-2.3
1,816,090	-		BBR_RS17965	0.32	+0.2
1,816,121	-		BBR_RS17965	0.34	-0.3
1,816,157	-		BBR_RS17965	0.37	+0.7
1,816,197	-		BBR_RS17965	0.40	-0.6
1,816,211	+		BBR_RS17965	0.42	-0.7
1,816,228	+		BBR_RS17965	0.43	+0.3
1,816,228	+		BBR_RS17965	0.43	+0.6
1,816,243	-		BBR_RS17965	0.44	-0.1
1,816,265	+		BBR_RS17965	0.46	-1.3
1,816,265	+		BBR_RS17965	0.46	-0.6
1,816,265	+		BBR_RS17965	0.46	+0.4
1,816,273	-		BBR_RS17965	0.47	-0.4
1,816,273	-		BBR_RS17965	0.47	+0.0
1,816,273	-		BBR_RS17965	0.47	+0.7
1,816,273	-		BBR_RS17965	0.47	-2.6
1,816,275	+		BBR_RS17965	0.47	+0.9
1,816,278	-		BBR_RS17965	0.47	+0.6
1,816,329	+		BBR_RS17965	0.51	+0.9
1,816,332	-		BBR_RS17965	0.51	-0.7
1,816,332	-		BBR_RS17965	0.51	-0.4
1,816,337	+		BBR_RS17965	0.52	-0.1
1,816,337	-		BBR_RS17965	0.52	-1.4
1,816,344	+		BBR_RS17965	0.52	+0.1
1,816,347	-		BBR_RS17965	0.53	+0.8
1,816,390	+		BBR_RS17965	0.56	-0.4
1,816,390	+		BBR_RS17965	0.56	-0.5
1,816,398	-		BBR_RS17965	0.57	-1.4
1,816,435	+		BBR_RS17965	0.60	+0.3
1,816,443	-		BBR_RS17965	0.61	+1.4
1,816,443	-		BBR_RS17965	0.61	+0.9
1,816,456	+		BBR_RS17965	0.62	-0.6
1,816,487	-		BBR_RS17965	0.64	+0.0
1,816,499	+		BBR_RS17965	0.65	-0.7
1,816,499	+		BBR_RS17965	0.65	-1.2
1,816,512	-		BBR_RS17965	0.66	-0.0
1,816,514	+		BBR_RS17965	0.67	+1.1
1,816,522	-		BBR_RS17965	0.67	-0.1
1,816,557	+		BBR_RS17965	0.70	-0.6
1,816,557	+		BBR_RS17965	0.70	-0.1
1,816,557	+		BBR_RS17965	0.70	+0.8
1,816,565	-		BBR_RS17965	0.71	+0.2
1,816,575	-		BBR_RS17965	0.72	-1.6
1,816,583	-		BBR_RS17965	0.72	-1.0
1,816,611	-		BBR_RS17965	0.75	-1.8
1,816,611	-		BBR_RS17965	0.75	+0.4
1,816,696	+		BBR_RS17965	0.82	-0.3
1,816,696	+		BBR_RS17965	0.82	-0.4
1,816,696	+		BBR_RS17965	0.82	-0.7
1,816,698	-		BBR_RS17965	0.82	+0.6
1,816,698	-		BBR_RS17965	0.82	+0.7
1,816,701	+		BBR_RS17965	0.82	-0.1
1,816,704	-		BBR_RS17965	0.82	-0.4
1,816,704	-		BBR_RS17965	0.82	-0.3
1,816,704	-		BBR_RS17965	0.82	+1.2
1,816,709	-		BBR_RS17965	0.83	+1.6
1,816,709	-		BBR_RS17965	0.83	+0.0
1,816,714	-		BBR_RS17965	0.83	+0.1
1,816,772	+		BBR_RS17965	0.88	+0.2
1,816,772	+		BBR_RS17965	0.88	-0.6
1,816,772	+		BBR_RS17965	0.88	+0.4
1,816,772	+		BBR_RS17965	0.88	-0.7
1,816,772	+		BBR_RS17965	0.88	-0.1
1,816,772	+		BBR_RS17965	0.88	-1.4
1,816,772	+		BBR_RS17965	0.88	-1.2
1,816,780	-		BBR_RS17965	0.88	+0.1
1,816,780	-		BBR_RS17965	0.88	+0.3
1,816,780	-		BBR_RS17965	0.88	-1.9
1,816,780	-		BBR_RS17965	0.88	+0.7
1,816,780	-		BBR_RS17965	0.88	-0.6
1,816,780	-		BBR_RS17965	0.88	+1.0
1,816,782	+		BBR_RS17965	0.89	-1.3
1,816,783	+		BBR_RS17965	0.89	-0.6
1,816,791	-		BBR_RS17965	0.89	-0.6
1,816,896	+				-1.3
1,816,896	+				-0.3
1,816,904	-				-1.2
1,816,909	-				+1.2
1,816,921	+				+1.0
1,816,925	+				-1.3
1,816,925	+				+0.5
1,816,956	-				-1.8
1,816,961	+				-0.4
1,816,985	-				-0.2
1,817,002	+				+0.0
1,817,005	-				-0.1
1,817,095	+				-2.5
1,817,102	+				-3.0
1,817,110	-				-4.0
1,817,110	-				-1.8
1,817,110	-				-2.0
1,817,110	-				-2.1
1,817,113	+				-1.7
1,817,113	+				-1.8
1,817,121	-				-3.7
1,817,146	+		BBR_RS17970	0.12	-2.9
1,817,154	-		BBR_RS17970	0.13	-3.9
1,817,162	-		BBR_RS17970	0.14	-2.6
1,817,167	+		BBR_RS17970	0.14	-3.0
1,817,168	-		BBR_RS17970	0.14	-2.7
1,817,168	-		BBR_RS17970	0.14	-1.7
1,817,188	-		BBR_RS17970	0.16	-3.0
1,817,206	+		BBR_RS17970	0.18	-4.0
1,817,214	-		BBR_RS17970	0.19	-3.0
1,817,214	-		BBR_RS17970	0.19	-1.6
1,817,224	-		BBR_RS17970	0.20	-3.4
1,817,236	+		BBR_RS17970	0.21	-4.3
1,817,244	-		BBR_RS17970	0.21	-3.3
1,817,244	-		BBR_RS17970	0.21	-3.3
1,817,244	-		BBR_RS17970	0.21	-4.3
1,817,263	+		BBR_RS17970	0.23	-3.3
1,817,284	+		BBR_RS17970	0.25	-4.6
1,817,285	+		BBR_RS17970	0.25	-3.0
1,817,287	-		BBR_RS17970	0.25	-4.7
1,817,292	-		BBR_RS17970	0.26	-4.1
1,817,402	+		BBR_RS17970	0.36	-2.1
1,817,410	-		BBR_RS17970	0.37	-1.4
1,817,412	+		BBR_RS17970	0.37	-4.1
1,817,412	+		BBR_RS17970	0.37	-2.2
1,817,424	+		BBR_RS17970	0.38	-2.6
1,817,431	+		BBR_RS17970	0.39	-2.8
1,817,431	+		BBR_RS17970	0.39	-1.9
1,817,442	-		BBR_RS17970	0.40	-2.4
1,817,469	+		BBR_RS17970	0.43	-1.5
1,817,477	-		BBR_RS17970	0.43	-3.9
1,817,489	+		BBR_RS17970	0.45	-1.1
1,817,537	-		BBR_RS17970	0.49	-3.3
1,817,539	+		BBR_RS17970	0.49	-1.1
1,817,541	+		BBR_RS17970	0.50	-3.8
1,817,547	-		BBR_RS17970	0.50	-1.6
1,817,551	+		BBR_RS17970	0.50	-2.7
1,817,553	+		BBR_RS17970	0.51	-2.7
1,817,594	+		BBR_RS17970	0.55	-4.2
1,817,594	+		BBR_RS17970	0.55	-2.3
1,817,599	+		BBR_RS17970	0.55	-2.0
1,817,604	+		BBR_RS17970	0.55	-3.7
1,817,610	+		BBR_RS17970	0.56	-3.1
1,817,610	+		BBR_RS17970	0.56	-3.9
1,817,626	-		BBR_RS17970	0.58	-1.6
1,817,640	-		BBR_RS17970	0.59	-2.0
1,817,641	+		BBR_RS17970	0.59	-2.3
1,817,651	+		BBR_RS17970	0.60	-3.0
1,817,659	-		BBR_RS17970	0.61	-2.3
1,817,659	-		BBR_RS17970	0.61	-1.8
1,817,682	+		BBR_RS17970	0.63	-2.7
1,817,682	-		BBR_RS17970	0.63	-2.9
1,817,682	-		BBR_RS17970	0.63	-1.0
1,817,685	+		BBR_RS17970	0.63	-3.4
1,817,685	+		BBR_RS17970	0.63	-2.1
1,817,689	-		BBR_RS17970	0.64	-1.4
1,817,693	-		BBR_RS17970	0.64	-2.6
1,817,703	-		BBR_RS17970	0.65	-3.5
1,817,719	+		BBR_RS17970	0.66	-3.5
1,817,732	+		BBR_RS17970	0.68	-2.4
1,817,732	+		BBR_RS17970	0.68	-1.5
1,817,732	+		BBR_RS17970	0.68	-2.7
1,817,732	+		BBR_RS17970	0.68	-2.4
1,817,732	+		BBR_RS17970	0.68	-2.5
1,817,734	+		BBR_RS17970	0.68	-3.4
1,817,734	+		BBR_RS17970	0.68	-1.9
1,817,740	-		BBR_RS17970	0.68	-2.7
1,817,740	-		BBR_RS17970	0.68	-1.7
1,817,742	-		BBR_RS17970	0.69	-1.1
1,817,742	-		BBR_RS17970	0.69	-3.0
1,817,804	+		BBR_RS17970	0.74	-1.9
1,817,804	+		BBR_RS17970	0.74	-4.2
1,817,804	+		BBR_RS17970	0.74	-3.4
1,817,842	+		BBR_RS17970	0.78	-3.5
1,817,878	+		BBR_RS17970	0.81	-1.5
1,817,878	+		BBR_RS17970	0.81	-3.2
1,817,878	+		BBR_RS17970	0.81	-1.2
1,817,886	-		BBR_RS17970	0.82	-3.6
1,817,886	-		BBR_RS17970	0.82	-1.9
1,817,886	-		BBR_RS17970	0.82	-3.2
1,817,886	-		BBR_RS17970	0.82	-2.9
1,817,886	-		BBR_RS17970	0.82	-3.3
1,817,886	-		BBR_RS17970	0.82	-2.2
1,817,886	-		BBR_RS17970	0.82	-3.1
1,817,928	+		BBR_RS17970	0.86	-1.9
1,817,935	-		BBR_RS17970	0.87	-2.9
1,817,948	+		BBR_RS17970	0.88	-2.6
1,817,956	-		BBR_RS17970	0.89	-1.1
1,817,957	+		BBR_RS17970	0.89	-1.3
1,817,965	+		BBR_RS17970	0.90	-2.8
1,818,107	+				-0.9
1,818,113	-				+0.2
1,818,113	-				+0.7
1,818,115	-				+0.3
1,818,129	-				+0.7
1,818,138	-				+0.7
1,818,153	-				+1.1
1,818,177	-				+0.1
1,818,186	+				+0.6
1,818,218	-		BBR_RS17975	0.14	+1.2
1,818,241	+		BBR_RS17975	0.19	+0.9
1,818,266	-		BBR_RS17975	0.24	+1.0
1,818,268	-		BBR_RS17975	0.24	-0.4
1,818,268	-		BBR_RS17975	0.24	-0.6
1,818,268	-		BBR_RS17975	0.24	+0.1
1,818,314	+		BBR_RS17975	0.34	+0.3
1,818,426	+		BBR_RS17975	0.58	-0.5
1,818,428	+		BBR_RS17975	0.58	+0.1
1,818,546	-		BBR_RS17975	0.83	-0.4
1,818,571	+		BBR_RS17975	0.88	-0.3
1,818,577	-		BBR_RS17975	0.89	-0.0
1,818,579	-				+0.2
1,818,607	+				+0.0
1,818,630	+				-0.6
1,818,638	-				+0.5
1,818,638	-				+0.9
1,818,638	-				-0.4
1,818,638	-				+0.8
1,818,731	+				+1.2
1,818,739	-				+0.0
1,818,750	+				+0.0
1,818,750	+				-0.5
1,818,774	-				-1.5
1,818,782	+				-0.0
1,818,791	-				-1.0
1,818,797	+				-1.0
1,818,854	+		BBR_RS17980	0.17	+0.5
1,818,854	+		BBR_RS17980	0.17	+0.8
1,818,862	-		BBR_RS17980	0.18	-0.2
1,818,862	-		BBR_RS17980	0.18	-0.2
1,818,862	-		BBR_RS17980	0.18	-0.1
1,818,862	-		BBR_RS17980	0.18	-1.1
1,818,864	+		BBR_RS17980	0.18	-1.0
1,818,864	+		BBR_RS17980	0.18	+0.1
1,818,864	+		BBR_RS17980	0.18	-0.4
1,818,885	+		BBR_RS17980	0.22	-0.6
1,818,929	+		BBR_RS17980	0.30	+0.4
1,818,937	-		BBR_RS17980	0.31	+0.6
1,818,952	-		BBR_RS17980	0.34	+0.9
1,819,014	-		BBR_RS17980	0.45	-0.4
1,819,020	+		BBR_RS17980	0.46	-0.4