Experiment: cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14230 and BBR_RS14235 overlap by 1 nucleotides BBR_RS14235 and BBR_RS14240 are separated by 30 nucleotides BBR_RS14240 and BBR_RS14245 are separated by 177 nucleotides BBR_RS14245 and BBR_RS14250 are separated by 2 nucleotides
BBR_RS14230: BBR_RS14230 - HAMP domain-containing histidine kinase, at 967,216 to 968,289
_RS14230
BBR_RS14235: BBR_RS14235 - DNA-binding response regulator, at 968,289 to 969,011
_RS14235
BBR_RS14240: BBR_RS14240 - 1,4-alpha-glucan branching protein GlgB, at 969,042 to 971,294
_RS14240
BBR_RS14245: BBR_RS14245 - CarD family transcriptional regulator, at 971,472 to 972,065
_RS14245
BBR_RS14250: BBR_RS14250 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 972,068 to 972,577
_RS14250
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -2
-1
0
1 at 968.043 kb on - strand, within BBR_RS14230 at 968.102 kb on - strand, within BBR_RS14230 at 968.117 kb on + strand, within BBR_RS14230 at 969.068 kb on - strand at 969.131 kb on + strand at 969.208 kb on + strand at 969.400 kb on + strand, within BBR_RS14240 at 969.445 kb on - strand, within BBR_RS14240 at 969.661 kb on - strand, within BBR_RS14240 at 969.675 kb on + strand, within BBR_RS14240 at 969.675 kb on + strand, within BBR_RS14240 at 969.675 kb on + strand, within BBR_RS14240 at 969.675 kb on + strand, within BBR_RS14240 at 969.759 kb on + strand, within BBR_RS14240 at 969.904 kb on - strand, within BBR_RS14240 at 969.934 kb on + strand, within BBR_RS14240 at 969.934 kb on + strand, within BBR_RS14240 at 969.994 kb on - strand, within BBR_RS14240 at 970.019 kb on - strand, within BBR_RS14240 at 970.019 kb on - strand, within BBR_RS14240 at 970.044 kb on - strand, within BBR_RS14240 at 970.081 kb on - strand, within BBR_RS14240 at 970.099 kb on + strand, within BBR_RS14240 at 970.159 kb on - strand, within BBR_RS14240 at 970.182 kb on + strand, within BBR_RS14240 at 970.263 kb on - strand, within BBR_RS14240 at 970.380 kb on - strand, within BBR_RS14240 at 970.460 kb on + strand, within BBR_RS14240 at 970.546 kb on + strand, within BBR_RS14240 at 970.632 kb on + strand, within BBR_RS14240 at 970.647 kb on + strand, within BBR_RS14240 at 970.770 kb on - strand, within BBR_RS14240 at 970.910 kb on + strand, within BBR_RS14240 at 971.215 kb on + strand at 971.295 kb on + strand at 971.406 kb on - strand at 971.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 968,043 - BBR_RS14230 0.77 -0.9 968,102 - BBR_RS14230 0.82 -1.2 968,117 + BBR_RS14230 0.84 -2.1 969,068 - -0.0 969,131 + -0.1 969,208 + -0.3 969,400 + BBR_RS14240 0.16 -1.5 969,445 - BBR_RS14240 0.18 -0.6 969,661 - BBR_RS14240 0.27 +1.1 969,675 + BBR_RS14240 0.28 +0.0 969,675 + BBR_RS14240 0.28 -0.6 969,675 + BBR_RS14240 0.28 -0.3 969,675 + BBR_RS14240 0.28 +0.5 969,759 + BBR_RS14240 0.32 -1.5 969,904 - BBR_RS14240 0.38 -0.4 969,934 + BBR_RS14240 0.40 -0.1 969,934 + BBR_RS14240 0.40 -0.5 969,994 - BBR_RS14240 0.42 -0.6 970,019 - BBR_RS14240 0.43 +0.5 970,019 - BBR_RS14240 0.43 -2.1 970,044 - BBR_RS14240 0.44 -1.0 970,081 - BBR_RS14240 0.46 -0.6 970,099 + BBR_RS14240 0.47 -0.6 970,159 - BBR_RS14240 0.50 -0.6 970,182 + BBR_RS14240 0.51 -0.7 970,263 - BBR_RS14240 0.54 -0.5 970,380 - BBR_RS14240 0.59 -0.1 970,460 + BBR_RS14240 0.63 -0.5 970,546 + BBR_RS14240 0.67 -1.6 970,632 + BBR_RS14240 0.71 +1.6 970,647 + BBR_RS14240 0.71 -1.5 970,770 - BBR_RS14240 0.77 -1.5 970,910 + BBR_RS14240 0.83 -0.0 971,215 + -0.2 971,295 + +0.8 971,406 - -0.4 971,408 + +0.2
Or see this region's nucleotide sequence