Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31335

Experiment: Glucose (C) and nitrate (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with TAPS
5,982,494	-				-1.1
5,982,499	+				-1.4
5,982,499	+				+0.3
5,982,499	+				-1.2
5,982,500	-				-0.2
5,982,500	-				-0.2
5,982,500	-				-0.3
5,982,500	-				-0.4
5,982,615	+		PFLU_RS26785	0.16	+0.2
5,982,615	+		PFLU_RS26785	0.16	+0.8
5,982,615	+		PFLU_RS26785	0.16	-0.4
5,982,615	+		PFLU_RS26785	0.16	+0.1
5,982,615	+		PFLU_RS26785	0.16	-0.5
5,982,615	+		PFLU_RS26785	0.16	+0.4
5,982,615	+		PFLU_RS26785	0.16	+1.1
5,982,616	-		PFLU_RS26785	0.16	+0.4
5,982,616	-		PFLU_RS26785	0.16	+1.7
5,982,773	+		PFLU_RS26785	0.36	+0.6
5,982,773	+		PFLU_RS26785	0.36	-0.7
5,982,773	+		PFLU_RS26785	0.36	-0.5
5,982,773	+		PFLU_RS26785	0.36	-0.5
5,982,773	+		PFLU_RS26785	0.36	-0.5
5,982,773	+		PFLU_RS26785	0.36	-0.9
5,982,773	+		PFLU_RS26785	0.36	+1.6
5,982,774	-		PFLU_RS26785	0.36	-0.8
5,982,774	-		PFLU_RS26785	0.36	+1.2
5,982,774	-		PFLU_RS26785	0.36	-1.6
5,982,890	+		PFLU_RS26785	0.51	-0.4
5,982,892	-		PFLU_RS26785	0.51	+1.2
5,982,917	+		PFLU_RS26785	0.54	-0.6
5,982,917	+		PFLU_RS26785	0.54	+0.4
5,982,917	+		PFLU_RS26785	0.54	+0.6
5,982,917	+		PFLU_RS26785	0.54	-1.5
5,982,917	+		PFLU_RS26785	0.54	-0.7
5,982,917	+		PFLU_RS26785	0.54	-0.4
5,982,917	+		PFLU_RS26785	0.54	+0.9
5,982,917	+		PFLU_RS26785	0.54	+3.4
5,982,917	+		PFLU_RS26785	0.54	-0.4
5,982,917	+		PFLU_RS26785	0.54	-1.2
5,982,917	+		PFLU_RS26785	0.54	+0.5
5,982,917	+		PFLU_RS26785	0.54	+0.8
5,982,918	-		PFLU_RS26785	0.55	+0.1
5,982,918	-		PFLU_RS26785	0.55	-1.1
5,982,918	-		PFLU_RS26785	0.55	-2.6
5,982,918	-		PFLU_RS26785	0.55	-0.2
5,982,918	-		PFLU_RS26785	0.55	-0.9
5,982,918	-		PFLU_RS26785	0.55	+0.2
5,982,918	-		PFLU_RS26785	0.55	+1.6
5,982,918	-		PFLU_RS26785	0.55	-0.9
5,982,918	-		PFLU_RS26785	0.55	-0.8
5,982,918	-		PFLU_RS26785	0.55	+0.5
5,982,918	-		PFLU_RS26785	0.55	-2.4
5,982,918	-		PFLU_RS26785	0.55	-1.7
5,982,918	-		PFLU_RS26785	0.55	+0.4
5,982,918	-		PFLU_RS26785	0.55	-0.6
5,982,918	-		PFLU_RS26785	0.55	-1.0
5,982,918	-		PFLU_RS26785	0.55	-1.3
5,982,918	-		PFLU_RS26785	0.55	-2.1
5,982,918	-		PFLU_RS26785	0.55	-0.9
5,982,918	-		PFLU_RS26785	0.55	+1.1
5,983,030	+		PFLU_RS26785	0.69	-0.3
5,983,030	+		PFLU_RS26785	0.69	+0.7
5,983,030	+		PFLU_RS26785	0.69	-1.0
5,983,030	+		PFLU_RS26785	0.69	-0.5
5,983,030	+		PFLU_RS26785	0.69	+0.4
5,983,030	+		PFLU_RS26785	0.69	-0.6
5,983,030	+		PFLU_RS26785	0.69	-0.1
5,983,030	+		PFLU_RS26785	0.69	-0.9
5,983,031	-		PFLU_RS26785	0.69	+0.1
5,983,031	-		PFLU_RS26785	0.69	+1.0
5,983,031	-		PFLU_RS26785	0.69	-0.5
5,983,031	-		PFLU_RS26785	0.69	-0.8
5,983,046	+		PFLU_RS26785	0.71	+2.7
5,983,046	+		PFLU_RS26785	0.71	-1.4
5,983,046	+		PFLU_RS26785	0.71	-0.2
5,983,046	+		PFLU_RS26785	0.71	-3.6
5,983,046	+		PFLU_RS26785	0.71	+0.3
5,983,046	+		PFLU_RS26785	0.71	+1.4
5,983,046	+		PFLU_RS26785	0.71	+0.4
5,983,046	+		PFLU_RS26785	0.71	+1.1
5,983,046	+		PFLU_RS26785	0.71	+1.1
5,983,047	-		PFLU_RS26785	0.71	+0.4
5,983,047	-		PFLU_RS26785	0.71	-1.2
5,983,047	-		PFLU_RS26785	0.71	-1.3
5,983,047	-		PFLU_RS26785	0.71	-0.9
5,983,047	-		PFLU_RS26785	0.71	+0.9
5,983,047	-		PFLU_RS26785	0.71	-0.7
5,983,047	-		PFLU_RS26785	0.71	+0.0
5,983,047	-		PFLU_RS26785	0.71	+0.0
5,983,052	+		PFLU_RS26785	0.72	-0.6
5,983,052	+		PFLU_RS26785	0.72	+0.9
5,983,052	+		PFLU_RS26785	0.72	+1.3
5,983,052	+		PFLU_RS26785	0.72	+2.3
5,983,052	+		PFLU_RS26785	0.72	+0.6
5,983,052	+		PFLU_RS26785	0.72	+1.3
5,983,052	+		PFLU_RS26785	0.72	-0.1
5,983,053	-		PFLU_RS26785	0.72	-1.3
5,983,053	-		PFLU_RS26785	0.72	-0.0
5,983,053	-		PFLU_RS26785	0.72	-1.3
5,983,115	+		PFLU_RS26785	0.80	+1.4
5,983,115	+		PFLU_RS26785	0.80	-1.1
5,983,115	+		PFLU_RS26785	0.80	+0.8
5,983,115	+		PFLU_RS26785	0.80	-2.0
5,983,116	-		PFLU_RS26785	0.80	-1.2
5,983,168	-		PFLU_RS26785	0.87	+0.2
5,983,168	-		PFLU_RS26785	0.87	-1.1
5,983,225	-				-0.1
5,983,225	-				+0.8
5,983,243	+				-1.3
5,983,243	+				-0.2
5,983,244	-				-0.6
5,983,244	-				+0.2
5,983,283	+				-0.3
5,983,284	-				-0.0
5,983,284	-				+1.3
5,983,286	+				+0.2
5,983,287	-				-0.6
5,983,287	-				-1.8
5,983,287	-				-0.7
5,983,287	-				-0.1
5,983,287	-				-0.7
5,983,367	+		PFLU_RS31150	0.44	-0.1
5,983,367	+		PFLU_RS31150	0.44	-0.1
5,983,368	-		PFLU_RS31150	0.44	+0.6
5,983,368	-		PFLU_RS31150	0.44	+0.6
5,983,370	+		PFLU_RS31150	0.45	+1.5
5,983,370	+		PFLU_RS31150	0.45	+0.6
5,983,370	+		PFLU_RS31150	0.45	-0.5
5,983,370	+		PFLU_RS31150	0.45	+0.6
5,983,370	+		PFLU_RS31150	0.45	-0.7
5,983,370	+		PFLU_RS31150	0.45	+0.8
5,983,370	+		PFLU_RS31150	0.45	-0.9
5,983,371	-		PFLU_RS31150	0.46	+0.6
5,983,371	-		PFLU_RS31150	0.46	+1.8
5,983,371	-		PFLU_RS31150	0.46	-1.1
5,983,371	-		PFLU_RS31150	0.46	-0.8
5,983,371	-		PFLU_RS31150	0.46	-1.7
5,983,371	-		PFLU_RS31150	0.46	-2.0
5,983,371	-		PFLU_RS31150	0.46	+0.2
5,983,371	-		PFLU_RS31150	0.46	-2.3
5,983,371	-		PFLU_RS31150	0.46	+1.3
5,983,473	+				+3.5
5,983,473	+				+0.4
5,983,473	+				+0.3
5,983,474	-				+0.1
5,983,492	+				-0.3
5,983,557	+		PFLU_RS31335	0.28	+0.6
5,983,557	+		PFLU_RS31335	0.28	-1.2
5,983,557	+		PFLU_RS31335	0.28	+0.1
5,983,558	-		PFLU_RS31335	0.28	-0.9
5,983,558	-		PFLU_RS31335	0.28	+1.6
5,983,558	-		PFLU_RS31335	0.28	+0.5
5,983,558	-		PFLU_RS31335	0.28	+1.0
5,983,571	+		PFLU_RS31335	0.33	+0.6
5,983,571	+		PFLU_RS31335	0.33	-2.0
5,983,571	+		PFLU_RS31335	0.33	+0.9
5,983,572	-		PFLU_RS31335	0.33	+0.8
5,983,572	-		PFLU_RS31335	0.33	+1.9
5,983,611	+		PFLU_RS31335	0.48	+1.6
5,983,611	+		PFLU_RS31335	0.48	+0.8
5,983,611	+		PFLU_RS31335	0.48	+0.7
5,983,612	-		PFLU_RS31335	0.48	+0.3
5,983,629	+		PFLU_RS31335	0.55	+0.4
5,983,700	+		PFLU_RS31335	0.81	-0.5
5,983,755	+				-0.5
5,983,756	-				-2.1
5,983,789	+				-1.0
5,983,789	+				-0.8
5,983,789	+				+0.6
5,983,789	+				+1.9
5,983,789	+				+0.5
5,983,790	-				-0.6
5,983,790	-				-0.9
5,983,790	-				-0.9
5,983,790	-				+1.6
5,983,790	-				+1.2
5,983,790	-				-0.2
5,983,835	+				+0.7
5,983,835	+				+0.8
5,983,835	+				+0.6
5,983,835	+				+0.4
5,983,835	+				-1.2
5,983,835	+				+0.7
5,983,836	-				+0.4
5,983,836	-				-0.2
5,983,836	-				-1.0
5,983,853	+				-1.0
5,983,867	+				+0.6
5,983,867	+				+1.6
5,983,867	+				-1.9
5,983,867	+				-1.8
5,983,867	+				+0.4
5,983,868	-				-3.2
5,983,868	-				+2.1
5,983,868	-				-0.1
5,983,868	-				-0.2
5,983,878	-				+1.1
5,983,934	-				-0.9
5,983,934	-				+0.3
5,983,944	+				-0.6
5,983,944	+				-3.1
5,983,945	-				+0.7
5,983,945	-				+1.9
5,983,945	-				-0.3
5,983,959	+				+0.6
5,983,959	+				-1.1
5,983,959	+				-1.1
5,983,959	+				-0.2
5,983,959	+				-1.4
5,983,959	+				+1.1
5,983,959	+				+0.8
5,983,959	+				+0.9
5,983,960	-				+1.3
5,983,960	-				-0.5
5,983,960	-				+1.4
5,983,960	-				+0.4
5,983,960	-				+0.6
5,983,960	-				-0.8
5,983,960	-				+0.7
5,983,960	-				+0.5
5,983,960	-				+0.6
5,983,960	-				-1.6
5,983,960	-				+0.4
5,983,960	-				-3.2
5,983,980	+				-0.4
5,983,980	+				-1.0
5,983,980	+				-0.5
5,983,980	+				-1.6
5,983,980	+				-0.9
5,983,980	+				-0.5
5,983,981	-				+0.4
5,983,981	-				+0.7
5,983,981	-				+0.7
5,983,981	-				+0.2
5,983,981	-				+0.4
5,983,981	-				+1.9
5,983,981	-				-0.1
5,983,981	-				+0.7
5,984,067	+				+0.2
5,984,067	+				+0.2
5,984,067	+				+0.3
5,984,067	+				-0.8
5,984,067	+				+0.7
5,984,067	+				-3.0
5,984,067	+				+0.6
5,984,067	+				-1.5
5,984,067	+				+2.1
5,984,068	-				-0.1
5,984,068	-				-2.1
5,984,068	-				+0.1
5,984,068	-				-0.3
5,984,068	-				+0.4
5,984,068	-				+0.0
5,984,068	-				+0.6
5,984,068	-				-0.1
5,984,068	-				-0.8
5,984,162	+		PFLU_RS31155	0.16	-0.9
5,984,224	+		PFLU_RS31155	0.27	-2.1
5,984,225	-		PFLU_RS31155	0.28	-0.2
5,984,235	-		PFLU_RS31155	0.29	-2.2
5,984,235	-		PFLU_RS31155	0.29	+0.2
5,984,235	-		PFLU_RS31155	0.29	+0.1
5,984,238	-		PFLU_RS31155	0.30	+0.4
5,984,244	+		PFLU_RS31155	0.31	+0.7
5,984,244	+		PFLU_RS31155	0.31	-0.6
5,984,244	+		PFLU_RS31155	0.31	+1.9
5,984,244	+		PFLU_RS31155	0.31	+1.4
5,984,245	-		PFLU_RS31155	0.31	+0.7
5,984,245	-		PFLU_RS31155	0.31	-0.2
5,984,245	-		PFLU_RS31155	0.31	-0.0
5,984,245	-		PFLU_RS31155	0.31	-0.2
5,984,245	-		PFLU_RS31155	0.31	-2.7
5,984,245	-		PFLU_RS31155	0.31	+0.2
5,984,247	+		PFLU_RS31155	0.31	-0.1
5,984,247	+		PFLU_RS31155	0.31	-0.2
5,984,247	+		PFLU_RS31155	0.31	+0.3
5,984,247	+		PFLU_RS31155	0.31	-0.0
5,984,247	+		PFLU_RS31155	0.31	+0.3
5,984,247	+		PFLU_RS31155	0.31	-2.6
5,984,247	+		PFLU_RS31155	0.31	+1.2
5,984,247	+		PFLU_RS31155	0.31	-0.8
5,984,247	+		PFLU_RS31155	0.31	+0.6
5,984,247	+		PFLU_RS31155	0.31	-0.0
5,984,248	-		PFLU_RS31155	0.32	-1.6
5,984,248	-		PFLU_RS31155	0.32	-0.2
5,984,248	-		PFLU_RS31155	0.32	-1.3
5,984,248	-		PFLU_RS31155	0.32	+1.3
5,984,248	-		PFLU_RS31155	0.32	+0.1
5,984,248	-		PFLU_RS31155	0.32	+1.9
5,984,248	-		PFLU_RS31155	0.32	+1.1
5,984,248	-		PFLU_RS31155	0.32	+1.4
5,984,248	-		PFLU_RS31155	0.32	+1.0
5,984,248	-		PFLU_RS31155	0.32	-1.8
5,984,291	+		PFLU_RS31155	0.39	-2.1
5,984,291	+		PFLU_RS31155	0.39	-1.1
5,984,291	+		PFLU_RS31155	0.39	-0.6
5,984,291	+		PFLU_RS31155	0.39	+0.2
5,984,291	+		PFLU_RS31155	0.39	-1.7
5,984,291	+		PFLU_RS31155	0.39	+0.9
5,984,291	+		PFLU_RS31155	0.39	-0.1
5,984,291	+		PFLU_RS31155	0.39	+0.8
5,984,291	+		PFLU_RS31155	0.39	+0.2
5,984,291	+		PFLU_RS31155	0.39	+0.4
5,984,291	+		PFLU_RS31155	0.39	+0.0
5,984,291	+		PFLU_RS31155	0.39	-0.6
5,984,291	+		PFLU_RS31155	0.39	-1.1
5,984,292	-		PFLU_RS31155	0.39	-1.0
5,984,292	-		PFLU_RS31155	0.39	-0.3
5,984,292	-		PFLU_RS31155	0.39	-0.5
5,984,292	-		PFLU_RS31155	0.39	+1.1
5,984,292	-		PFLU_RS31155	0.39	-0.8
5,984,292	-		PFLU_RS31155	0.39	-1.6
5,984,292	-		PFLU_RS31155	0.39	-2.7
5,984,292	-		PFLU_RS31155	0.39	-1.6
5,984,292	-		PFLU_RS31155	0.39	+0.0
5,984,292	-		PFLU_RS31155	0.39	-2.0
5,984,292	-		PFLU_RS31155	0.39	-0.4
5,984,358	+		PFLU_RS31155	0.51	+0.3
5,984,405	+		PFLU_RS31155	0.60	+0.2
5,984,406	-		PFLU_RS31155	0.60	-0.2
5,984,406	-		PFLU_RS31155	0.60	-0.5
5,984,406	-		PFLU_RS31155	0.60	-0.2
5,984,418	+		PFLU_RS31155	0.62	+0.7
5,984,419	-		PFLU_RS31155	0.62	-0.8
5,984,419	-		PFLU_RS31155	0.62	-1.9
5,984,444	+		PFLU_RS31155	0.66	-1.0
5,984,524	+		PFLU_RS31155	0.81	-0.1
5,984,525	-		PFLU_RS31155	0.81	+2.2
5,984,525	-		PFLU_RS31155	0.81	-1.7
5,984,525	-		PFLU_RS31155	0.81	-0.3
5,984,525	-		PFLU_RS31155	0.81	+0.0
5,984,535	+		PFLU_RS31155	0.83	+0.9
5,984,536	-		PFLU_RS31155	0.83	-0.2
5,984,536	-		PFLU_RS31155	0.83	+1.9
5,984,592	+				+0.9
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5,984,622	+				+1.9
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5,984,690	+				-3.5
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5,984,704	-				+0.5