Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16095

Experiment: p-Coumaric (C) and Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with MOPS
3,655,609	+		PFLU_RS16090	0.48	+8.1
3,655,609	+		PFLU_RS16090	0.48	+6.1
3,655,624	+		PFLU_RS16090	0.49	+5.3
3,655,625	-		PFLU_RS16090	0.49	+6.2
3,655,625	-		PFLU_RS16090	0.49	+5.0
3,655,625	-		PFLU_RS16090	0.49	+5.9
3,655,719	-		PFLU_RS16090	0.56	+5.5
3,655,730	-		PFLU_RS16090	0.57	+5.3
3,655,730	-		PFLU_RS16090	0.57	+4.7
3,655,730	-		PFLU_RS16090	0.57	+5.5
3,655,730	-		PFLU_RS16090	0.57	+5.6
3,655,906	+		PFLU_RS16090	0.70	+3.0
3,655,907	-		PFLU_RS16090	0.71	+4.6
3,656,039	-		PFLU_RS16090	0.80	+4.8
3,656,110	+		PFLU_RS16090	0.86	+6.6
3,656,110	+		PFLU_RS16090	0.86	+4.4
3,656,110	+		PFLU_RS16090	0.86	+5.3
3,656,110	+		PFLU_RS16090	0.86	+5.1
3,656,111	-		PFLU_RS16090	0.86	+0.4
3,656,111	-		PFLU_RS16090	0.86	+4.0
3,656,111	-		PFLU_RS16090	0.86	+6.0
3,656,111	-		PFLU_RS16090	0.86	+5.5
3,656,125	+		PFLU_RS16090	0.87	+4.2
3,656,126	-		PFLU_RS16090	0.87	+6.8
3,656,126	-		PFLU_RS16090	0.87	+6.5
3,656,126	-		PFLU_RS16090	0.87	+7.9
3,656,128	+		PFLU_RS16090	0.87	+4.5
3,656,129	-		PFLU_RS16090	0.87	+6.1
3,656,129	-		PFLU_RS16090	0.87	+6.5
3,656,129	-		PFLU_RS16090	0.87	+5.9
3,656,292	+				-2.0
3,656,292	+				+0.6
3,656,292	+				-2.2
3,656,292	+				+3.9
3,656,293	-				+5.3
3,656,293	-				-1.4
3,656,293	-				-1.6
3,656,293	-				-1.4
3,656,293	-				+5.8
3,656,293	-				+6.4
3,656,293	-				+4.8
3,656,293	-				-1.9
3,656,293	-				-1.7
3,656,293	-				+5.7
3,656,293	-				+2.8
3,656,293	-				+2.8
3,656,293	-				-1.2
3,656,293	-				+2.7
3,656,293	-				+0.2
3,656,293	-				+1.3
3,656,293	-				+6.5
3,656,293	-				-1.9
3,656,382	+				+2.3
3,656,383	-				-3.0
3,656,582	+				-0.0
3,656,638	+				+3.5
3,656,653	+				-0.6
3,656,713	-				-0.2
3,656,897	+		PFLU_RS16095	0.24	+1.1
3,656,897	+		PFLU_RS16095	0.24	+0.2
3,656,898	-		PFLU_RS16095	0.24	-0.4
3,656,898	-		PFLU_RS16095	0.24	+2.4
3,657,023	+		PFLU_RS16095	0.34	-0.3
3,657,023	+		PFLU_RS16095	0.34	-1.4
3,657,023	+		PFLU_RS16095	0.34	+2.1
3,657,023	+		PFLU_RS16095	0.34	-3.0
3,657,023	+		PFLU_RS16095	0.34	-3.5
3,657,023	+		PFLU_RS16095	0.34	-0.2
3,657,023	+		PFLU_RS16095	0.34	+1.1
3,657,023	+		PFLU_RS16095	0.34	-0.2
3,657,024	-		PFLU_RS16095	0.35	-1.7
3,657,024	-		PFLU_RS16095	0.35	-1.2
3,657,024	-		PFLU_RS16095	0.35	-1.8
3,657,151	-		PFLU_RS16095	0.45	-0.9
3,657,272	+		PFLU_RS16095	0.55	-1.4
3,657,272	+		PFLU_RS16095	0.55	+0.4
3,657,272	+		PFLU_RS16095	0.55	-2.7
3,657,273	-		PFLU_RS16095	0.55	+0.7
3,657,273	-		PFLU_RS16095	0.55	-1.4
3,657,296	+		PFLU_RS16095	0.57	+2.2
3,657,296	+		PFLU_RS16095	0.57	+0.1
3,657,296	+		PFLU_RS16095	0.57	+0.3
3,657,296	+		PFLU_RS16095	0.57	-0.6
3,657,296	+		PFLU_RS16095	0.57	+1.4
3,657,296	+		PFLU_RS16095	0.57	-0.4
3,657,296	+		PFLU_RS16095	0.57	-0.9
3,657,296	+		PFLU_RS16095	0.57	+0.6
3,657,296	+		PFLU_RS16095	0.57	+1.1
3,657,296	+		PFLU_RS16095	0.57	+1.4
3,657,296	+		PFLU_RS16095	0.57	+1.1
3,657,296	+		PFLU_RS16095	0.57	+1.3
3,657,296	+		PFLU_RS16095	0.57	+0.3
3,657,296	+		PFLU_RS16095	0.57	+2.3
3,657,296	+		PFLU_RS16095	0.57	-0.2
3,657,296	+		PFLU_RS16095	0.57	-0.4
3,657,297	-		PFLU_RS16095	0.57	-0.6
3,657,297	-		PFLU_RS16095	0.57	-2.3
3,657,297	-		PFLU_RS16095	0.57	-2.5
3,657,297	-		PFLU_RS16095	0.57	+1.4
3,657,297	-		PFLU_RS16095	0.57	+1.9
3,657,297	-		PFLU_RS16095	0.57	-1.2
3,657,297	-		PFLU_RS16095	0.57	-0.6
3,657,297	-		PFLU_RS16095	0.57	+0.7
3,657,297	-		PFLU_RS16095	0.57	+0.6
3,657,297	-		PFLU_RS16095	0.57	-0.2
3,657,297	-		PFLU_RS16095	0.57	-0.1
3,657,297	-		PFLU_RS16095	0.57	-0.6
3,657,297	-		PFLU_RS16095	0.57	+1.0
3,657,297	-		PFLU_RS16095	0.57	+0.4
3,657,297	-		PFLU_RS16095	0.57	-2.0
3,657,297	-		PFLU_RS16095	0.57	-0.6
3,657,297	-		PFLU_RS16095	0.57	+0.4
3,657,297	-		PFLU_RS16095	0.57	+0.4
3,657,297	-		PFLU_RS16095	0.57	-2.6
3,657,297	-		PFLU_RS16095	0.57	-1.2
3,657,297	-		PFLU_RS16095	0.57	-1.6
3,657,297	-		PFLU_RS16095	0.57	-1.2
3,657,346	+		PFLU_RS16095	0.61	+1.7
3,657,576	-		PFLU_RS16095	0.80	-0.6
3,657,576	-		PFLU_RS16095	0.80	-2.7
3,657,597	-		PFLU_RS16095	0.82	+1.7
3,657,794	-				-2.7
3,657,794	-				+0.5
3,657,862	+				+0.3
3,657,862	+				-0.3
3,657,901	+		PFLU_RS16100	0.11	+0.1
3,657,901	+		PFLU_RS16100	0.11	+1.0
3,657,901	+		PFLU_RS16100	0.11	+2.8
3,657,901	+		PFLU_RS16100	0.11	+0.8
3,657,901	+		PFLU_RS16100	0.11	-0.9
3,657,901	+		PFLU_RS16100	0.11	+0.4
3,657,901	+		PFLU_RS16100	0.11	+0.2
3,657,901	+		PFLU_RS16100	0.11	+1.0
3,657,902	-		PFLU_RS16100	0.12	-0.2
3,657,902	-		PFLU_RS16100	0.12	-2.0
3,657,902	-		PFLU_RS16100	0.12	+1.0
3,657,902	-		PFLU_RS16100	0.12	-0.3
3,657,902	-		PFLU_RS16100	0.12	-1.3
3,657,994	+		PFLU_RS16100	0.21	-2.0
3,658,002	+		PFLU_RS16100	0.22	+1.8
3,658,003	-		PFLU_RS16100	0.22	-2.2
3,658,033	+		PFLU_RS16100	0.25	+0.7
3,658,033	+		PFLU_RS16100	0.25	+0.1
3,658,033	+		PFLU_RS16100	0.25	-3.2
3,658,033	+		PFLU_RS16100	0.25	+1.1
3,658,033	+		PFLU_RS16100	0.25	-1.0
3,658,034	-		PFLU_RS16100	0.26	+0.0
3,658,034	-		PFLU_RS16100	0.26	-1.0
3,658,034	-		PFLU_RS16100	0.26	-1.5
3,658,034	-		PFLU_RS16100	0.26	-0.5
3,658,034	-		PFLU_RS16100	0.26	+0.1
3,658,034	-		PFLU_RS16100	0.26	+2.0
3,658,034	-		PFLU_RS16100	0.26	+2.8
3,658,133	-		PFLU_RS16100	0.36	+0.3
3,658,133	-		PFLU_RS16100	0.36	-0.4
3,658,133	-		PFLU_RS16100	0.36	+2.4
3,658,174	+		PFLU_RS16100	0.40	+1.2
3,658,174	+		PFLU_RS16100	0.40	-1.0
3,658,174	+		PFLU_RS16100	0.40	+0.4
3,658,175	-		PFLU_RS16100	0.40	+0.0
3,658,175	-		PFLU_RS16100	0.40	-0.9
3,658,187	-		PFLU_RS16100	0.42	+1.6
3,658,187	-		PFLU_RS16100	0.42	-1.7
3,658,190	-		PFLU_RS16100	0.42	-2.3
3,658,242	-		PFLU_RS16100	0.47	-0.6
3,658,243	+		PFLU_RS16100	0.48	+0.9
3,658,243	+		PFLU_RS16100	0.48	-1.4
3,658,243	+		PFLU_RS16100	0.48	-1.7
3,658,243	+		PFLU_RS16100	0.48	+2.0
3,658,243	+		PFLU_RS16100	0.48	+2.3
3,658,244	-		PFLU_RS16100	0.48	-2.7
3,658,244	-		PFLU_RS16100	0.48	-2.1
3,658,244	-		PFLU_RS16100	0.48	+0.5
3,658,386	-		PFLU_RS16100	0.63	-1.7
3,658,386	-		PFLU_RS16100	0.63	+0.3
3,658,477	+		PFLU_RS16100	0.72	-0.6
3,658,477	+		PFLU_RS16100	0.72	+0.7
3,658,477	+		PFLU_RS16100	0.72	-0.9
3,658,477	+		PFLU_RS16100	0.72	-1.7
3,658,477	+		PFLU_RS16100	0.72	+1.2
3,658,478	-		PFLU_RS16100	0.72	-1.9
3,658,478	-		PFLU_RS16100	0.72	-0.6
3,658,478	-		PFLU_RS16100	0.72	-0.7
3,658,478	-		PFLU_RS16100	0.72	+2.2
3,658,478	-		PFLU_RS16100	0.72	-0.9
3,658,478	-		PFLU_RS16100	0.72	+0.0
3,658,573	+		PFLU_RS16100	0.82	-1.3
3,658,573	+		PFLU_RS16100	0.82	+0.5
3,658,573	+		PFLU_RS16100	0.82	-0.8
3,658,574	-		PFLU_RS16100	0.82	-0.7
3,658,574	-		PFLU_RS16100	0.82	-0.7
3,658,574	-		PFLU_RS16100	0.82	-1.7
3,658,574	-		PFLU_RS16100	0.82	-0.3
3,658,630	+		PFLU_RS16100	0.88	+1.4
3,658,727	+				+0.8
3,658,727	+				+0.9
3,658,727	+				+0.3
3,658,728	-				+0.3
3,658,753	+				-0.9
3,658,753	+				+1.4