Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24090

Experiment: Glucose (C) and Ammonium chloride (N); with MOPS; with PEG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24085 and PFLU_RS24090 are separated by 0 nucleotidesPFLU_RS24090 and PFLU_RS24095 are separated by 67 nucleotidesPFLU_RS24095 and PFLU_RS24100 are separated by 176 nucleotides PFLU_RS24085: PFLU_RS24085 - Holliday junction branch migration DNA helicase RuvB, at 5,392,499 to 5,393,557 _RS24085 PFLU_RS24090: PFLU_RS24090 - Holliday junction branch migration protein RuvA, at 5,393,558 to 5,394,169 _RS24090 PFLU_RS24095: PFLU_RS24095 - crossover junction endodeoxyribonuclease RuvC, at 5,394,237 to 5,394,761 _RS24095 PFLU_RS24100: PFLU_RS24100 - YebC/PmpR family DNA-binding transcriptional regulator, at 5,394,938 to 5,395,684 _RS24100 Position (kb) 5393 5394 5395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5392.582 kb on - strandat 5392.582 kb on - strandat 5392.582 kb on - strandat 5392.626 kb on + strand, within PFLU_RS24085at 5392.626 kb on + strand, within PFLU_RS24085at 5392.627 kb on - strand, within PFLU_RS24085at 5392.627 kb on - strand, within PFLU_RS24085at 5392.627 kb on - strand, within PFLU_RS24085at 5392.627 kb on - strand, within PFLU_RS24085at 5392.627 kb on - strand, within PFLU_RS24085at 5392.644 kb on + strand, within PFLU_RS24085at 5392.751 kb on + strand, within PFLU_RS24085at 5392.751 kb on + strand, within PFLU_RS24085at 5392.752 kb on - strand, within PFLU_RS24085at 5392.831 kb on + strand, within PFLU_RS24085at 5392.831 kb on + strand, within PFLU_RS24085at 5392.831 kb on + strand, within PFLU_RS24085at 5393.002 kb on + strand, within PFLU_RS24085at 5393.002 kb on + strand, within PFLU_RS24085at 5393.003 kb on - strand, within PFLU_RS24085at 5393.003 kb on - strand, within PFLU_RS24085at 5393.003 kb on - strand, within PFLU_RS24085at 5393.003 kb on - strand, within PFLU_RS24085at 5393.003 kb on - strand, within PFLU_RS24085at 5393.004 kb on + strand, within PFLU_RS24085at 5393.005 kb on - strand, within PFLU_RS24085at 5393.005 kb on - strand, within PFLU_RS24085at 5393.005 kb on - strand, within PFLU_RS24085at 5393.013 kb on - strand, within PFLU_RS24085at 5393.176 kb on - strand, within PFLU_RS24085at 5393.423 kb on - strand, within PFLU_RS24085at 5393.463 kb on + strandat 5393.463 kb on + strandat 5393.463 kb on + strandat 5393.463 kb on + strandat 5393.463 kb on + strandat 5393.463 kb on + strandat 5393.559 kb on + strandat 5393.559 kb on + strandat 5393.559 kb on + strandat 5393.560 kb on - strandat 5393.560 kb on - strandat 5393.560 kb on - strandat 5393.560 kb on - strandat 5393.560 kb on - strandat 5393.560 kb on - strandat 5393.560 kb on - strandat 5393.560 kb on - strandat 5393.655 kb on + strand, within PFLU_RS24090at 5393.719 kb on + strand, within PFLU_RS24090at 5393.720 kb on - strand, within PFLU_RS24090at 5393.756 kb on + strand, within PFLU_RS24090at 5393.757 kb on - strand, within PFLU_RS24090at 5393.757 kb on - strand, within PFLU_RS24090at 5393.757 kb on - strand, within PFLU_RS24090at 5393.757 kb on - strand, within PFLU_RS24090at 5393.988 kb on + strand, within PFLU_RS24090at 5393.988 kb on + strand, within PFLU_RS24090at 5393.988 kb on + strand, within PFLU_RS24090at 5393.989 kb on - strand, within PFLU_RS24090at 5393.989 kb on - strand, within PFLU_RS24090at 5393.989 kb on - strand, within PFLU_RS24090at 5394.017 kb on + strand, within PFLU_RS24090at 5394.017 kb on + strand, within PFLU_RS24090at 5394.017 kb on + strand, within PFLU_RS24090at 5394.017 kb on + strand, within PFLU_RS24090at 5394.017 kb on + strand, within PFLU_RS24090at 5394.017 kb on + strand, within PFLU_RS24090at 5394.018 kb on - strand, within PFLU_RS24090at 5394.018 kb on - strand, within PFLU_RS24090at 5394.018 kb on - strand, within PFLU_RS24090at 5394.018 kb on - strand, within PFLU_RS24090at 5394.093 kb on + strand, within PFLU_RS24090at 5394.094 kb on - strand, within PFLU_RS24090at 5394.183 kb on - strandat 5394.183 kb on - strandat 5394.217 kb on + strandat 5394.217 kb on + strandat 5394.217 kb on + strandat 5394.218 kb on - strandat 5394.235 kb on + strandat 5394.235 kb on + strandat 5394.235 kb on + strandat 5394.235 kb on + strandat 5394.236 kb on - strandat 5394.236 kb on - strandat 5394.236 kb on - strandat 5394.236 kb on - strandat 5394.457 kb on + strand, within PFLU_RS24095at 5394.457 kb on + strand, within PFLU_RS24095at 5394.457 kb on + strand, within PFLU_RS24095at 5394.551 kb on + strand, within PFLU_RS24095at 5394.573 kb on - strand, within PFLU_RS24095at 5394.586 kb on + strand, within PFLU_RS24095at 5394.586 kb on + strand, within PFLU_RS24095at 5394.586 kb on + strand, within PFLU_RS24095at 5394.587 kb on - strand, within PFLU_RS24095at 5394.616 kb on + strand, within PFLU_RS24095at 5394.617 kb on - strand, within PFLU_RS24095at 5394.617 kb on - strand, within PFLU_RS24095at 5394.679 kb on + strand, within PFLU_RS24095at 5394.680 kb on - strand, within PFLU_RS24095at 5394.680 kb on - strand, within PFLU_RS24095at 5394.680 kb on - strand, within PFLU_RS24095at 5394.747 kb on + strandat 5394.747 kb on + strandat 5394.748 kb on - strandat 5394.748 kb on - strandat 5394.748 kb on - strandat 5394.748 kb on - strandat 5394.748 kb on - strandat 5394.748 kb on - strandat 5394.753 kb on + strandat 5394.753 kb on + strandat 5394.753 kb on + strandat 5394.761 kb on + strandat 5394.761 kb on + strandat 5394.762 kb on - strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.788 kb on + strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.789 kb on - strandat 5394.846 kb on - strandat 5394.939 kb on + strandat 5394.939 kb on + strandat 5394.939 kb on + strandat 5394.939 kb on + strandat 5394.939 kb on + strandat 5394.939 kb on + strandat 5394.939 kb on + strandat 5394.940 kb on - strandat 5394.940 kb on - strandat 5394.940 kb on - strandat 5394.940 kb on - strandat 5394.940 kb on - strandat 5394.984 kb on + strandat 5394.984 kb on + strandat 5394.984 kb on + strandat 5394.984 kb on + strandat 5394.985 kb on - strandat 5394.985 kb on - strandat 5394.985 kb on - strandat 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.143 kb on + strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.144 kb on - strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.166 kb on + strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100at 5395.167 kb on - strand, within PFLU_RS24100

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and Ammonium chloride (N); with MOPS; with PEG
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5,392,582 - +1.0
5,392,582 - +2.0
5,392,582 - +2.0
5,392,626 + PFLU_RS24085 0.12 +2.0
5,392,626 + PFLU_RS24085 0.12 +2.0
5,392,627 - PFLU_RS24085 0.12 -0.3
5,392,627 - PFLU_RS24085 0.12 +1.5
5,392,627 - PFLU_RS24085 0.12 +2.0
5,392,627 - PFLU_RS24085 0.12 -1.0
5,392,627 - PFLU_RS24085 0.12 +1.0
5,392,644 + PFLU_RS24085 0.14 +2.0
5,392,751 + PFLU_RS24085 0.24 +2.0
5,392,751 + PFLU_RS24085 0.24 +2.0
5,392,752 - PFLU_RS24085 0.24 +2.0
5,392,831 + PFLU_RS24085 0.31 +2.0
5,392,831 + PFLU_RS24085 0.31 +0.0
5,392,831 + PFLU_RS24085 0.31 +1.0
5,393,002 + PFLU_RS24085 0.47 +2.0
5,393,002 + PFLU_RS24085 0.47 +1.0
5,393,003 - PFLU_RS24085 0.48 +2.0
5,393,003 - PFLU_RS24085 0.48 +2.0
5,393,003 - PFLU_RS24085 0.48 -0.3
5,393,003 - PFLU_RS24085 0.48 +1.0
5,393,003 - PFLU_RS24085 0.48 +2.0
5,393,004 + PFLU_RS24085 0.48 +0.0
5,393,005 - PFLU_RS24085 0.48 +1.0
5,393,005 - PFLU_RS24085 0.48 +1.0
5,393,005 - PFLU_RS24085 0.48 +0.5
5,393,013 - PFLU_RS24085 0.49 +0.0
5,393,176 - PFLU_RS24085 0.64 +0.5
5,393,423 - PFLU_RS24085 0.87 +2.0
5,393,463 + +0.5
5,393,463 + +2.0
5,393,463 + -0.3
5,393,463 + +0.0
5,393,463 + +2.0
5,393,463 + +2.0
5,393,559 + +1.0
5,393,559 + +2.0
5,393,559 + +2.0
5,393,560 - -1.1
5,393,560 - +0.0
5,393,560 - +0.5
5,393,560 - +1.0
5,393,560 - -0.9
5,393,560 - +1.0
5,393,560 - +2.0
5,393,560 - +0.0
5,393,655 + PFLU_RS24090 0.16 +0.5
5,393,719 + PFLU_RS24090 0.26 +0.5
5,393,720 - PFLU_RS24090 0.26 +2.0
5,393,756 + PFLU_RS24090 0.32 +1.0
5,393,757 - PFLU_RS24090 0.33 +2.0
5,393,757 - PFLU_RS24090 0.33 -0.8
5,393,757 - PFLU_RS24090 0.33 +0.5
5,393,757 - PFLU_RS24090 0.33 +0.5
5,393,988 + PFLU_RS24090 0.70 +2.0
5,393,988 + PFLU_RS24090 0.70 -0.3
5,393,988 + PFLU_RS24090 0.70 -1.3
5,393,989 - PFLU_RS24090 0.70 +0.5
5,393,989 - PFLU_RS24090 0.70 -0.3
5,393,989 - PFLU_RS24090 0.70 +0.0
5,394,017 + PFLU_RS24090 0.75 +0.5
5,394,017 + PFLU_RS24090 0.75 +2.0
5,394,017 + PFLU_RS24090 0.75 +2.0
5,394,017 + PFLU_RS24090 0.75 +0.5
5,394,017 + PFLU_RS24090 0.75 -0.5
5,394,017 + PFLU_RS24090 0.75 +0.5
5,394,018 - PFLU_RS24090 0.75 +1.0
5,394,018 - PFLU_RS24090 0.75 +2.0
5,394,018 - PFLU_RS24090 0.75 -0.3
5,394,018 - PFLU_RS24090 0.75 +0.5
5,394,093 + PFLU_RS24090 0.87 +0.0
5,394,094 - PFLU_RS24090 0.88 +2.0
5,394,183 - -0.9
5,394,183 - -1.6
5,394,217 + -0.1
5,394,217 + -1.0
5,394,217 + -1.5
5,394,218 - -0.1
5,394,235 + +0.3
5,394,235 + -0.4
5,394,235 + +1.1
5,394,235 + -1.4
5,394,236 - +0.9
5,394,236 - -2.0
5,394,236 - -0.4
5,394,236 - -2.2
5,394,457 + PFLU_RS24095 0.42 -1.4
5,394,457 + PFLU_RS24095 0.42 +2.0
5,394,457 + PFLU_RS24095 0.42 +1.0
5,394,551 + PFLU_RS24095 0.60 +1.0
5,394,573 - PFLU_RS24095 0.64 +0.5
5,394,586 + PFLU_RS24095 0.66 +2.0
5,394,586 + PFLU_RS24095 0.66 +2.0
5,394,586 + PFLU_RS24095 0.66 +1.0
5,394,587 - PFLU_RS24095 0.67 +2.0
5,394,616 + PFLU_RS24095 0.72 +2.0
5,394,617 - PFLU_RS24095 0.72 +2.0
5,394,617 - PFLU_RS24095 0.72 +0.5
5,394,679 + PFLU_RS24095 0.84 +2.0
5,394,680 - PFLU_RS24095 0.84 +2.0
5,394,680 - PFLU_RS24095 0.84 +2.0
5,394,680 - PFLU_RS24095 0.84 +2.0
5,394,747 + -0.3
5,394,747 + -1.0
5,394,748 - +1.5
5,394,748 - +2.0
5,394,748 - +0.0
5,394,748 - -0.1
5,394,748 - -0.3
5,394,748 - -0.5
5,394,753 + +0.0
5,394,753 + -2.0
5,394,753 + -0.1
5,394,761 + -0.2
5,394,761 + +1.4
5,394,762 - +0.5
5,394,788 + -3.3
5,394,788 + -2.2
5,394,788 + -0.4
5,394,788 + -0.9
5,394,788 + -0.9
5,394,788 + +0.3
5,394,788 + +0.7
5,394,788 + -0.2
5,394,788 + -0.4
5,394,789 - -0.7
5,394,789 - -0.9
5,394,789 - +0.9
5,394,789 - -0.2
5,394,789 - +0.5
5,394,789 - +0.4
5,394,789 - -0.9
5,394,789 - -0.1
5,394,789 - -0.4
5,394,789 - +0.3
5,394,789 - +0.5
5,394,789 - -1.8
5,394,789 - -2.3
5,394,789 - +0.8
5,394,789 - -1.4
5,394,846 - -0.1
5,394,939 + +0.0
5,394,939 + -0.4
5,394,939 + +0.7
5,394,939 + -1.0
5,394,939 + +0.6
5,394,939 + -0.5
5,394,939 + -0.5
5,394,940 - -1.7
5,394,940 - -0.2
5,394,940 - -0.4
5,394,940 - -1.1
5,394,940 - +0.3
5,394,984 + +0.5
5,394,984 + +0.3
5,394,984 + +1.0
5,394,984 + -0.9
5,394,985 - +0.2
5,394,985 - +0.5
5,394,985 - -0.3
5,395,143 + PFLU_RS24100 0.27 -0.5
5,395,143 + PFLU_RS24100 0.27 -0.7
5,395,143 + PFLU_RS24100 0.27 +1.8
5,395,143 + PFLU_RS24100 0.27 +1.5
5,395,143 + PFLU_RS24100 0.27 +0.7
5,395,143 + PFLU_RS24100 0.27 -0.8
5,395,143 + PFLU_RS24100 0.27 -0.1
5,395,143 + PFLU_RS24100 0.27 -0.4
5,395,143 + PFLU_RS24100 0.27 +3.6
5,395,143 + PFLU_RS24100 0.27 +1.6
5,395,143 + PFLU_RS24100 0.27 -0.9
5,395,143 + PFLU_RS24100 0.27 -0.1
5,395,143 + PFLU_RS24100 0.27 -0.9
5,395,144 - PFLU_RS24100 0.28 -0.1
5,395,144 - PFLU_RS24100 0.28 -0.0
5,395,144 - PFLU_RS24100 0.28 +1.2
5,395,144 - PFLU_RS24100 0.28 +0.3
5,395,144 - PFLU_RS24100 0.28 -0.5
5,395,144 - PFLU_RS24100 0.28 +0.8
5,395,144 - PFLU_RS24100 0.28 -0.4
5,395,144 - PFLU_RS24100 0.28 +0.2
5,395,144 - PFLU_RS24100 0.28 +1.0
5,395,144 - PFLU_RS24100 0.28 -0.3
5,395,144 - PFLU_RS24100 0.28 +1.0
5,395,144 - PFLU_RS24100 0.28 -0.3
5,395,144 - PFLU_RS24100 0.28 +0.3
5,395,166 + PFLU_RS24100 0.31 -0.5
5,395,166 + PFLU_RS24100 0.31 +1.0
5,395,166 + PFLU_RS24100 0.31 +0.2
5,395,166 + PFLU_RS24100 0.31 +0.2
5,395,166 + PFLU_RS24100 0.31 +0.6
5,395,166 + PFLU_RS24100 0.31 -1.4
5,395,166 + PFLU_RS24100 0.31 +0.6
5,395,166 + PFLU_RS24100 0.31 +0.5
5,395,166 + PFLU_RS24100 0.31 +0.2
5,395,166 + PFLU_RS24100 0.31 +0.7
5,395,166 + PFLU_RS24100 0.31 -1.8
5,395,166 + PFLU_RS24100 0.31 +0.4
5,395,166 + PFLU_RS24100 0.31 +1.6
5,395,166 + PFLU_RS24100 0.31 +1.3
5,395,166 + PFLU_RS24100 0.31 -0.5
5,395,166 + PFLU_RS24100 0.31 -0.8
5,395,166 + PFLU_RS24100 0.31 +0.0
5,395,166 + PFLU_RS24100 0.31 +0.8
5,395,166 + PFLU_RS24100 0.31 -1.3
5,395,166 + PFLU_RS24100 0.31 +0.7
5,395,166 + PFLU_RS24100 0.31 +0.0
5,395,166 + PFLU_RS24100 0.31 -0.6
5,395,166 + PFLU_RS24100 0.31 -2.0
5,395,166 + PFLU_RS24100 0.31 -1.7
5,395,167 - PFLU_RS24100 0.31 +0.3
5,395,167 - PFLU_RS24100 0.31 -0.1
5,395,167 - PFLU_RS24100 0.31 -0.1
5,395,167 - PFLU_RS24100 0.31 +3.6
5,395,167 - PFLU_RS24100 0.31 +0.8
5,395,167 - PFLU_RS24100 0.31 +3.6
5,395,167 - PFLU_RS24100 0.31 -0.6
5,395,167 - PFLU_RS24100 0.31 -0.3
5,395,167 - PFLU_RS24100 0.31 -0.7
5,395,167 - PFLU_RS24100 0.31 +0.5
5,395,167 - PFLU_RS24100 0.31 -0.6
5,395,167 - PFLU_RS24100 0.31 +0.2
5,395,167 - PFLU_RS24100 0.31 +0.0
5,395,167 - PFLU_RS24100 0.31 +0.2
5,395,167 - PFLU_RS24100 0.31 +0.3
5,395,167 - PFLU_RS24100 0.31 -0.4
5,395,167 - PFLU_RS24100 0.31 +2.4
5,395,167 - PFLU_RS24100 0.31 +0.5
5,395,167 - PFLU_RS24100 0.31 -0.1
5,395,167 - PFLU_RS24100 0.31 +0.5
5,395,167 - PFLU_RS24100 0.31 -0.8
5,395,167 - PFLU_RS24100 0.31 +0.5
5,395,167 - PFLU_RS24100 0.31 +0.8

Or see this region's nucleotide sequence