Experiment: Glucose (C) and Ammonium chloride (N); with MOPS; with PEG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25810 and PFLU_RS25815 are separated by 27 nucleotides PFLU_RS25815 and PFLU_RS25820 are separated by 47 nucleotides PFLU_RS25820 and PFLU_RS25825 are separated by 77 nucleotides PFLU_RS25825 and PFLU_RS25830 are separated by 96 nucleotides PFLU_RS25830 and PFLU_RS31100 are separated by 22 nucleotides
PFLU_RS25810: PFLU_RS25810 - translation initiation factor IF-2, at 5,765,596 to 5,768,121
_RS25810
PFLU_RS25815: PFLU_RS25815 - transcription termination/antitermination protein NusA, at 5,768,149 to 5,769,630
_RS25815
PFLU_RS25820: PFLU_RS25820 - ribosome maturation factor RimP, at 5,769,678 to 5,770,199
_RS25820
PFLU_RS25825: PFLU_RS25825 - tRNA-Met, at 5,770,277 to 5,770,353
_RS25825
PFLU_RS25830: PFLU_RS25830 - tRNA-Leu, at 5,770,450 to 5,770,535
_RS25830
PFLU_RS31100: PFLU_RS31100 - preprotein translocase subunit SecG, at 5,770,558 to 5,770,941
_RS31100
Position (kb)
5768
5769
5770 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5768.147 kb on - strand at 5768.147 kb on - strand at 5768.147 kb on - strand at 5768.151 kb on - strand at 5768.151 kb on - strand at 5768.151 kb on - strand at 5768.236 kb on - strand at 5768.263 kb on - strand at 5768.263 kb on - strand at 5768.267 kb on - strand at 5768.267 kb on - strand at 5768.267 kb on - strand at 5768.267 kb on - strand at 5768.267 kb on - strand at 5768.365 kb on - strand, within PFLU_RS25815 at 5768.377 kb on - strand, within PFLU_RS25815 at 5768.377 kb on - strand, within PFLU_RS25815 at 5768.377 kb on - strand, within PFLU_RS25815 at 5769.696 kb on - strand at 5769.696 kb on - strand at 5769.696 kb on - strand at 5769.696 kb on - strand at 5769.696 kb on - strand at 5769.696 kb on - strand at 5769.696 kb on - strand at 5769.696 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.157 kb on - strand at 5770.257 kb on - strand at 5770.373 kb on - strand at 5770.373 kb on - strand at 5770.373 kb on - strand at 5770.375 kb on - strand at 5770.375 kb on - strand at 5770.401 kb on + strand at 5770.401 kb on + strand at 5770.401 kb on + strand at 5770.401 kb on + strand at 5770.402 kb on - strand at 5770.402 kb on - strand at 5770.413 kb on + strand at 5770.413 kb on + strand at 5770.413 kb on + strand at 5770.413 kb on + strand at 5770.414 kb on - strand at 5770.414 kb on - strand at 5770.414 kb on - strand at 5770.447 kb on - strand at 5770.539 kb on - strand at 5770.539 kb on - strand at 5770.539 kb on - strand at 5770.548 kb on - strand at 5770.548 kb on - strand at 5770.548 kb on - strand at 5770.548 kb on - strand at 5770.548 kb on - strand at 5770.548 kb on - strand at 5770.548 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.560 kb on - strand at 5770.583 kb on - strand at 5770.583 kb on - strand at 5770.583 kb on - strand at 5770.583 kb on - strand at 5770.583 kb on - strand at 5770.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Ammonium chloride (N); with MOPS; with PEG remove 5,768,147 - +0.3 5,768,147 - +0.9 5,768,147 - +1.9 5,768,151 - -0.3 5,768,151 - +0.8 5,768,151 - -1.5 5,768,236 - -0.0 5,768,263 - -0.1 5,768,263 - -1.2 5,768,267 - +0.5 5,768,267 - -1.2 5,768,267 - -1.0 5,768,267 - +0.5 5,768,267 - -0.7 5,768,365 - PFLU_RS25815 0.15 -0.3 5,768,377 - PFLU_RS25815 0.15 -1.6 5,768,377 - PFLU_RS25815 0.15 +0.9 5,768,377 - PFLU_RS25815 0.15 -0.9 5,769,696 - +0.6 5,769,696 - +1.1 5,769,696 - -2.4 5,769,696 - -1.3 5,769,696 - -0.9 5,769,696 - -3.7 5,769,696 - +1.0 5,769,696 - +0.1 5,770,157 - -0.2 5,770,157 - +0.4 5,770,157 - +0.4 5,770,157 - +1.5 5,770,157 - -0.4 5,770,157 - -1.7 5,770,157 - -0.6 5,770,157 - +0.3 5,770,157 - +0.1 5,770,157 - +0.6 5,770,157 - -0.7 5,770,157 - -0.7 5,770,157 - +0.6 5,770,157 - -0.1 5,770,157 - -1.7 5,770,157 - -1.1 5,770,157 - -0.6 5,770,157 - -0.7 5,770,157 - -0.1 5,770,157 - -0.2 5,770,157 - -1.2 5,770,157 - +0.5 5,770,157 - -0.7 5,770,157 - -0.4 5,770,157 - -0.5 5,770,157 - -0.4 5,770,157 - +1.2 5,770,157 - -0.3 5,770,157 - -0.1 5,770,157 - +0.3 5,770,157 - -0.2 5,770,157 - -0.4 5,770,157 - -0.0 5,770,157 - +0.9 5,770,157 - -0.4 5,770,157 - +0.3 5,770,157 - +1.5 5,770,157 - -1.1 5,770,157 - -0.1 5,770,157 - +0.8 5,770,157 - +0.3 5,770,157 - -0.8 5,770,157 - -1.0 5,770,157 - +0.4 5,770,157 - +0.5 5,770,157 - -1.3 5,770,157 - +0.7 5,770,157 - -1.1 5,770,257 - +0.6 5,770,373 - -0.7 5,770,373 - -0.4 5,770,373 - +1.3 5,770,375 - -0.3 5,770,375 - +1.1 5,770,401 + -0.1 5,770,401 + -0.1 5,770,401 + -0.2 5,770,401 + -0.7 5,770,402 - +0.3 5,770,402 - +0.0 5,770,413 + -0.9 5,770,413 + +0.2 5,770,413 + +0.6 5,770,413 + +1.2 5,770,414 - +0.1 5,770,414 - -0.9 5,770,414 - +0.0 5,770,447 - +0.1 5,770,539 - -0.2 5,770,539 - -2.2 5,770,539 - +0.5 5,770,548 - -1.2 5,770,548 - -1.5 5,770,548 - +1.7 5,770,548 - -1.2 5,770,548 - -1.1 5,770,548 - +0.2 5,770,548 - -1.3 5,770,560 - -0.6 5,770,560 - +0.3 5,770,560 - +0.6 5,770,560 - -1.5 5,770,560 - -1.3 5,770,560 - -1.4 5,770,560 - +0.1 5,770,560 - +0.6 5,770,560 - -0.1 5,770,560 - -0.9 5,770,560 - -2.1 5,770,560 - +0.2 5,770,560 - -0.8 5,770,560 - -0.2 5,770,560 - +0.3 5,770,560 - -0.8 5,770,583 - -0.4 5,770,583 - -0.9 5,770,583 - -0.7 5,770,583 - +2.7 5,770,583 - -1.4 5,770,583 - +0.2
Or see this region's nucleotide sequence