Experiment: Glucose (C) and Ammonium chloride (N); with MOPS; with PEG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03605 and PFLU_RS03610 are separated by 301 nucleotides PFLU_RS03610 and PFLU_RS03615 are separated by 21 nucleotides PFLU_RS03615 and PFLU_RS03620 are separated by 168 nucleotides
PFLU_RS03605: PFLU_RS03605 - sigma-54-dependent Fis family transcriptional regulator, at 829,441 to 830,358
_RS03605
PFLU_RS03610: PFLU_RS03610 - redox-regulated ATPase YchF, at 830,660 to 831,760
_RS03610
PFLU_RS03615: PFLU_RS03615 - aminoacyl-tRNA hydrolase, at 831,782 to 832,366
_RS03615
PFLU_RS03620: PFLU_RS03620 - 50S ribosomal protein L25/general stress protein Ctc, at 832,535 to 833,137
_RS03620
Position (kb) 830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2 at 829.702 kb on + strand, within PFLU_RS03605 at 829.714 kb on + strand, within PFLU_RS03605 at 829.714 kb on + strand, within PFLU_RS03605 at 829.714 kb on + strand, within PFLU_RS03605 at 829.715 kb on - strand, within PFLU_RS03605 at 829.715 kb on - strand, within PFLU_RS03605 at 829.715 kb on - strand, within PFLU_RS03605 at 829.715 kb on - strand, within PFLU_RS03605 at 829.739 kb on + strand, within PFLU_RS03605 at 829.740 kb on - strand, within PFLU_RS03605 at 829.749 kb on + strand, within PFLU_RS03605 at 829.749 kb on + strand, within PFLU_RS03605 at 829.750 kb on - strand, within PFLU_RS03605 at 829.795 kb on + strand, within PFLU_RS03605 at 829.796 kb on - strand, within PFLU_RS03605 at 829.796 kb on - strand, within PFLU_RS03605 at 829.797 kb on + strand, within PFLU_RS03605 at 829.797 kb on + strand, within PFLU_RS03605 at 829.797 kb on + strand, within PFLU_RS03605 at 829.797 kb on + strand, within PFLU_RS03605 at 829.797 kb on + strand, within PFLU_RS03605 at 829.797 kb on + strand, within PFLU_RS03605 at 829.797 kb on + strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.798 kb on - strand, within PFLU_RS03605 at 829.856 kb on + strand, within PFLU_RS03605 at 829.856 kb on + strand, within PFLU_RS03605 at 829.896 kb on - strand, within PFLU_RS03605 at 829.897 kb on + strand, within PFLU_RS03605 at 829.933 kb on + strand, within PFLU_RS03605 at 829.933 kb on + strand, within PFLU_RS03605 at 829.933 kb on + strand, within PFLU_RS03605 at 829.934 kb on - strand, within PFLU_RS03605 at 829.934 kb on - strand, within PFLU_RS03605 at 829.941 kb on + strand, within PFLU_RS03605 at 829.942 kb on - strand, within PFLU_RS03605 at 829.942 kb on - strand, within PFLU_RS03605 at 829.993 kb on + strand, within PFLU_RS03605 at 829.993 kb on + strand, within PFLU_RS03605 at 829.993 kb on + strand, within PFLU_RS03605 at 829.993 kb on + strand, within PFLU_RS03605 at 829.993 kb on + strand, within PFLU_RS03605 at 829.994 kb on - strand, within PFLU_RS03605 at 830.039 kb on + strand, within PFLU_RS03605 at 830.039 kb on + strand, within PFLU_RS03605 at 830.040 kb on - strand, within PFLU_RS03605 at 830.040 kb on - strand, within PFLU_RS03605 at 830.050 kb on + strand, within PFLU_RS03605 at 830.050 kb on + strand, within PFLU_RS03605 at 830.050 kb on + strand, within PFLU_RS03605 at 830.050 kb on + strand, within PFLU_RS03605 at 830.050 kb on + strand, within PFLU_RS03605 at 830.051 kb on - strand, within PFLU_RS03605 at 830.051 kb on - strand, within PFLU_RS03605 at 830.051 kb on - strand, within PFLU_RS03605 at 830.051 kb on - strand, within PFLU_RS03605 at 830.051 kb on - strand, within PFLU_RS03605 at 830.051 kb on - strand, within PFLU_RS03605 at 830.051 kb on - strand, within PFLU_RS03605 at 830.067 kb on + strand, within PFLU_RS03605 at 830.068 kb on - strand, within PFLU_RS03605 at 830.086 kb on + strand, within PFLU_RS03605 at 830.086 kb on + strand, within PFLU_RS03605 at 830.086 kb on + strand, within PFLU_RS03605 at 830.086 kb on + strand, within PFLU_RS03605 at 830.086 kb on + strand, within PFLU_RS03605 at 830.086 kb on + strand, within PFLU_RS03605 at 830.086 kb on + strand, within PFLU_RS03605 at 830.087 kb on - strand, within PFLU_RS03605 at 830.087 kb on - strand, within PFLU_RS03605 at 830.087 kb on - strand, within PFLU_RS03605 at 830.087 kb on - strand, within PFLU_RS03605 at 830.087 kb on - strand, within PFLU_RS03605 at 830.087 kb on - strand, within PFLU_RS03605 at 830.097 kb on + strand, within PFLU_RS03605 at 830.097 kb on + strand, within PFLU_RS03605 at 830.097 kb on + strand, within PFLU_RS03605 at 830.097 kb on + strand, within PFLU_RS03605 at 830.097 kb on + strand, within PFLU_RS03605 at 830.097 kb on + strand, within PFLU_RS03605 at 830.097 kb on + strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.098 kb on - strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.099 kb on + strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.100 kb on - strand, within PFLU_RS03605 at 830.194 kb on + strand, within PFLU_RS03605 at 830.256 kb on + strand, within PFLU_RS03605 at 830.256 kb on + strand, within PFLU_RS03605 at 830.256 kb on + strand, within PFLU_RS03605 at 830.257 kb on - strand, within PFLU_RS03605 at 830.260 kb on + strand, within PFLU_RS03605 at 830.260 kb on + strand, within PFLU_RS03605 at 830.260 kb on + strand, within PFLU_RS03605 at 830.260 kb on + strand, within PFLU_RS03605 at 830.261 kb on - strand, within PFLU_RS03605 at 830.261 kb on - strand, within PFLU_RS03605 at 830.261 kb on - strand, within PFLU_RS03605 at 830.261 kb on - strand, within PFLU_RS03605 at 830.263 kb on - strand, within PFLU_RS03605 at 830.287 kb on + strand at 830.288 kb on - strand at 830.288 kb on - strand at 830.323 kb on - strand at 830.341 kb on - strand at 830.402 kb on + strand at 830.403 kb on - strand at 830.416 kb on + strand at 830.416 kb on + strand at 830.477 kb on - strand at 830.523 kb on - strand at 830.525 kb on - strand at 830.537 kb on - strand at 830.654 kb on + strand at 830.661 kb on + strand at 830.706 kb on + strand at 830.706 kb on + strand at 830.707 kb on - strand at 830.707 kb on - strand at 830.707 kb on - strand at 830.781 kb on + strand, within PFLU_RS03610 at 830.907 kb on + strand, within PFLU_RS03610 at 830.907 kb on + strand, within PFLU_RS03610 at 830.908 kb on - strand, within PFLU_RS03610 at 830.908 kb on - strand, within PFLU_RS03610 at 830.908 kb on - strand, within PFLU_RS03610 at 830.908 kb on - strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.144 kb on + strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.145 kb on - strand, within PFLU_RS03610 at 831.202 kb on + strand, within PFLU_RS03610 at 831.503 kb on + strand, within PFLU_RS03610 at 831.504 kb on - strand, within PFLU_RS03610 at 831.574 kb on + strand, within PFLU_RS03610 at 831.574 kb on + strand, within PFLU_RS03610 at 831.575 kb on - strand, within PFLU_RS03610 at 831.575 kb on - strand, within PFLU_RS03610 at 831.626 kb on - strand, within PFLU_RS03610 at 831.626 kb on - strand, within PFLU_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Ammonium chloride (N); with MOPS; with PEG remove 829,702 + PFLU_RS03605 0.28 -0.6 829,714 + PFLU_RS03605 0.30 -1.4 829,714 + PFLU_RS03605 0.30 +1.1 829,714 + PFLU_RS03605 0.30 +0.3 829,715 - PFLU_RS03605 0.30 +0.1 829,715 - PFLU_RS03605 0.30 -0.2 829,715 - PFLU_RS03605 0.30 -0.3 829,715 - PFLU_RS03605 0.30 -0.6 829,739 + PFLU_RS03605 0.32 -0.1 829,740 - PFLU_RS03605 0.33 -0.9 829,749 + PFLU_RS03605 0.34 -1.2 829,749 + PFLU_RS03605 0.34 +1.4 829,750 - PFLU_RS03605 0.34 +0.4 829,795 + PFLU_RS03605 0.39 +0.2 829,796 - PFLU_RS03605 0.39 -0.1 829,796 - PFLU_RS03605 0.39 +1.0 829,797 + PFLU_RS03605 0.39 +0.5 829,797 + PFLU_RS03605 0.39 +0.3 829,797 + PFLU_RS03605 0.39 -1.1 829,797 + PFLU_RS03605 0.39 +0.2 829,797 + PFLU_RS03605 0.39 -0.2 829,797 + PFLU_RS03605 0.39 +0.9 829,797 + PFLU_RS03605 0.39 +0.1 829,798 - PFLU_RS03605 0.39 +0.6 829,798 - PFLU_RS03605 0.39 +0.5 829,798 - PFLU_RS03605 0.39 -0.8 829,798 - PFLU_RS03605 0.39 +1.4 829,798 - PFLU_RS03605 0.39 +1.1 829,798 - PFLU_RS03605 0.39 -0.1 829,798 - PFLU_RS03605 0.39 +1.1 829,798 - PFLU_RS03605 0.39 -0.4 829,856 + PFLU_RS03605 0.45 +0.6 829,856 + PFLU_RS03605 0.45 -1.1 829,896 - PFLU_RS03605 0.50 +1.6 829,897 + PFLU_RS03605 0.50 -0.5 829,933 + PFLU_RS03605 0.54 -0.8 829,933 + PFLU_RS03605 0.54 -0.3 829,933 + PFLU_RS03605 0.54 -0.4 829,934 - PFLU_RS03605 0.54 -1.6 829,934 - PFLU_RS03605 0.54 -0.5 829,941 + PFLU_RS03605 0.54 +0.4 829,942 - PFLU_RS03605 0.55 -0.1 829,942 - PFLU_RS03605 0.55 -1.1 829,993 + PFLU_RS03605 0.60 -1.0 829,993 + PFLU_RS03605 0.60 +0.9 829,993 + PFLU_RS03605 0.60 -2.0 829,993 + PFLU_RS03605 0.60 -0.4 829,993 + PFLU_RS03605 0.60 +0.5 829,994 - PFLU_RS03605 0.60 -1.2 830,039 + PFLU_RS03605 0.65 -0.5 830,039 + PFLU_RS03605 0.65 -0.9 830,040 - PFLU_RS03605 0.65 +0.5 830,040 - PFLU_RS03605 0.65 -0.2 830,050 + PFLU_RS03605 0.66 -0.1 830,050 + PFLU_RS03605 0.66 +0.5 830,050 + PFLU_RS03605 0.66 +0.1 830,050 + PFLU_RS03605 0.66 +0.4 830,050 + PFLU_RS03605 0.66 -0.1 830,051 - PFLU_RS03605 0.66 -2.1 830,051 - PFLU_RS03605 0.66 -2.0 830,051 - PFLU_RS03605 0.66 -0.3 830,051 - PFLU_RS03605 0.66 +0.4 830,051 - PFLU_RS03605 0.66 +0.4 830,051 - PFLU_RS03605 0.66 +0.1 830,051 - PFLU_RS03605 0.66 -0.7 830,067 + PFLU_RS03605 0.68 +0.9 830,068 - PFLU_RS03605 0.68 +0.5 830,086 + PFLU_RS03605 0.70 -0.5 830,086 + PFLU_RS03605 0.70 -0.5 830,086 + PFLU_RS03605 0.70 -1.2 830,086 + PFLU_RS03605 0.70 +0.1 830,086 + PFLU_RS03605 0.70 +0.9 830,086 + PFLU_RS03605 0.70 -0.1 830,086 + PFLU_RS03605 0.70 +0.8 830,087 - PFLU_RS03605 0.70 -0.6 830,087 - PFLU_RS03605 0.70 -0.4 830,087 - PFLU_RS03605 0.70 -0.4 830,087 - PFLU_RS03605 0.70 -0.9 830,087 - PFLU_RS03605 0.70 +0.3 830,087 - PFLU_RS03605 0.70 +0.8 830,097 + PFLU_RS03605 0.71 +0.2 830,097 + PFLU_RS03605 0.71 +0.1 830,097 + PFLU_RS03605 0.71 +0.1 830,097 + PFLU_RS03605 0.71 -2.0 830,097 + PFLU_RS03605 0.71 +0.4 830,097 + PFLU_RS03605 0.71 -0.4 830,097 + PFLU_RS03605 0.71 -0.0 830,098 - PFLU_RS03605 0.72 +0.1 830,098 - PFLU_RS03605 0.72 +0.1 830,098 - PFLU_RS03605 0.72 +1.9 830,098 - PFLU_RS03605 0.72 +0.1 830,098 - PFLU_RS03605 0.72 +0.2 830,098 - PFLU_RS03605 0.72 -0.4 830,098 - PFLU_RS03605 0.72 -0.0 830,098 - PFLU_RS03605 0.72 +0.3 830,099 + PFLU_RS03605 0.72 +1.2 830,099 + PFLU_RS03605 0.72 -1.1 830,099 + PFLU_RS03605 0.72 +0.4 830,099 + PFLU_RS03605 0.72 +0.2 830,099 + PFLU_RS03605 0.72 -0.4 830,099 + PFLU_RS03605 0.72 -2.1 830,099 + PFLU_RS03605 0.72 -0.8 830,099 + PFLU_RS03605 0.72 -0.6 830,099 + PFLU_RS03605 0.72 +0.9 830,099 + PFLU_RS03605 0.72 -0.7 830,099 + PFLU_RS03605 0.72 -0.2 830,100 - PFLU_RS03605 0.72 +0.6 830,100 - PFLU_RS03605 0.72 +0.6 830,100 - PFLU_RS03605 0.72 -0.3 830,100 - PFLU_RS03605 0.72 +1.0 830,100 - PFLU_RS03605 0.72 +0.5 830,100 - PFLU_RS03605 0.72 +0.2 830,100 - PFLU_RS03605 0.72 +0.5 830,100 - PFLU_RS03605 0.72 +0.4 830,100 - PFLU_RS03605 0.72 +0.1 830,100 - PFLU_RS03605 0.72 +0.7 830,100 - PFLU_RS03605 0.72 -0.2 830,194 + PFLU_RS03605 0.82 -0.5 830,256 + PFLU_RS03605 0.89 +1.5 830,256 + PFLU_RS03605 0.89 +0.3 830,256 + PFLU_RS03605 0.89 +0.4 830,257 - PFLU_RS03605 0.89 -1.0 830,260 + PFLU_RS03605 0.89 +0.9 830,260 + PFLU_RS03605 0.89 +0.3 830,260 + PFLU_RS03605 0.89 +0.8 830,260 + PFLU_RS03605 0.89 -0.1 830,261 - PFLU_RS03605 0.89 -0.1 830,261 - PFLU_RS03605 0.89 +1.9 830,261 - PFLU_RS03605 0.89 +0.9 830,261 - PFLU_RS03605 0.89 -0.4 830,263 - PFLU_RS03605 0.90 -0.4 830,287 + -2.2 830,288 - -0.9 830,288 - -1.0 830,323 - -0.2 830,341 - +0.7 830,402 + +0.6 830,403 - -1.2 830,416 + +0.4 830,416 + -0.6 830,477 - -0.2 830,523 - -0.9 830,525 - -0.1 830,537 - +0.2 830,654 + +1.4 830,661 + +0.1 830,706 + -0.4 830,706 + +1.9 830,707 - +1.4 830,707 - +1.6 830,707 - -1.4 830,781 + PFLU_RS03610 0.11 +0.4 830,907 + PFLU_RS03610 0.22 -0.1 830,907 + PFLU_RS03610 0.22 -0.9 830,908 - PFLU_RS03610 0.23 -0.9 830,908 - PFLU_RS03610 0.23 +1.2 830,908 - PFLU_RS03610 0.23 -0.9 830,908 - PFLU_RS03610 0.23 -0.1 831,144 + PFLU_RS03610 0.44 +1.5 831,144 + PFLU_RS03610 0.44 +0.9 831,144 + PFLU_RS03610 0.44 -2.3 831,144 + PFLU_RS03610 0.44 -0.4 831,144 + PFLU_RS03610 0.44 +1.9 831,144 + PFLU_RS03610 0.44 +0.9 831,144 + PFLU_RS03610 0.44 -1.5 831,144 + PFLU_RS03610 0.44 -0.9 831,144 + PFLU_RS03610 0.44 -0.6 831,144 + PFLU_RS03610 0.44 +1.4 831,144 + PFLU_RS03610 0.44 -0.1 831,144 + PFLU_RS03610 0.44 -0.6 831,144 + PFLU_RS03610 0.44 -0.6 831,144 + PFLU_RS03610 0.44 -0.4 831,144 + PFLU_RS03610 0.44 -0.6 831,145 - PFLU_RS03610 0.44 +1.1 831,145 - PFLU_RS03610 0.44 +0.4 831,145 - PFLU_RS03610 0.44 +0.6 831,145 - PFLU_RS03610 0.44 -0.1 831,145 - PFLU_RS03610 0.44 -1.6 831,145 - PFLU_RS03610 0.44 +0.7 831,145 - PFLU_RS03610 0.44 +1.2 831,145 - PFLU_RS03610 0.44 +0.6 831,145 - PFLU_RS03610 0.44 -0.1 831,145 - PFLU_RS03610 0.44 -1.4 831,145 - PFLU_RS03610 0.44 +0.9 831,145 - PFLU_RS03610 0.44 +0.4 831,145 - PFLU_RS03610 0.44 -0.6 831,202 + PFLU_RS03610 0.49 +0.4 831,503 + PFLU_RS03610 0.77 -1.1 831,504 - PFLU_RS03610 0.77 +0.4 831,574 + PFLU_RS03610 0.83 -1.4 831,574 + PFLU_RS03610 0.83 +0.6 831,575 - PFLU_RS03610 0.83 -1.2 831,575 - PFLU_RS03610 0.83 +0.5 831,626 - PFLU_RS03610 0.88 -0.4 831,626 - PFLU_RS03610 0.88 -1.2
Or see this region's nucleotide sequence