Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16770

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
3,803,791	-				+0.3
3,803,791	-				-2.4
3,803,818	-				-0.0
3,803,831	+				+0.7
3,803,831	+				+0.4
3,803,831	+				+3.3
3,803,831	+				+2.0
3,803,832	-				-0.2
3,803,832	-				+2.9
3,803,832	-				+1.6
3,803,883	+				-1.6
3,803,883	+				-1.6
3,803,883	+				+0.1
3,803,883	+				-1.7
3,803,883	+				-1.4
3,803,884	-				-0.2
3,803,884	-				+2.3
3,803,884	-				+0.3
3,803,884	-				+1.1
3,803,884	-				-0.5
3,803,884	-				+2.3
3,803,885	+				-2.8
3,803,885	+				+0.8
3,803,885	+				+0.6
3,803,885	+				+0.7
3,803,885	+				-1.1
3,803,886	-				+1.1
3,803,931	+		PFLU_RS16765	0.11	-2.0
3,803,931	+		PFLU_RS16765	0.11	-1.5
3,803,932	-		PFLU_RS16765	0.12	-1.8
3,803,958	+		PFLU_RS16765	0.14	-2.2
3,803,958	+		PFLU_RS16765	0.14	+0.6
3,803,958	+		PFLU_RS16765	0.14	-2.7
3,803,958	+		PFLU_RS16765	0.14	-1.1
3,803,958	+		PFLU_RS16765	0.14	-1.1
3,803,958	+		PFLU_RS16765	0.14	-1.6
3,803,959	-		PFLU_RS16765	0.14	-0.5
3,803,959	-		PFLU_RS16765	0.14	+1.6
3,804,273	+		PFLU_RS16765	0.49	+0.8
3,804,273	+		PFLU_RS16765	0.49	-1.6
3,804,273	+		PFLU_RS16765	0.49	+1.1
3,804,274	-		PFLU_RS16765	0.49	+1.6
3,804,274	-		PFLU_RS16765	0.49	-1.9
3,804,274	-		PFLU_RS16765	0.49	+1.1
3,804,280	+		PFLU_RS16765	0.49	+0.2
3,804,334	+		PFLU_RS16765	0.55	+0.5
3,804,336	+		PFLU_RS16765	0.55	+0.4
3,804,336	+		PFLU_RS16765	0.55	-2.1
3,804,336	+		PFLU_RS16765	0.55	+1.6
3,804,336	+		PFLU_RS16765	0.55	-2.5
3,804,336	+		PFLU_RS16765	0.55	+3.1
3,804,337	-		PFLU_RS16765	0.55	-0.9
3,804,337	-		PFLU_RS16765	0.55	-2.1
3,804,337	-		PFLU_RS16765	0.55	+2.0
3,804,337	-		PFLU_RS16765	0.55	-1.4
3,804,337	-		PFLU_RS16765	0.55	-1.5
3,804,337	-		PFLU_RS16765	0.55	-0.5
3,804,337	-		PFLU_RS16765	0.55	+1.5
3,804,337	-		PFLU_RS16765	0.55	+1.6
3,804,337	-		PFLU_RS16765	0.55	-2.9
3,804,337	-		PFLU_RS16765	0.55	-0.7
3,804,337	-		PFLU_RS16765	0.55	+1.8
3,804,348	+		PFLU_RS16765	0.57	+1.6
3,804,349	-		PFLU_RS16765	0.57	-1.1
3,804,399	+		PFLU_RS16765	0.62	-0.4
3,804,399	+		PFLU_RS16765	0.62	-1.1
3,804,399	+		PFLU_RS16765	0.62	-0.8
3,804,399	+		PFLU_RS16765	0.62	+0.5
3,804,399	+		PFLU_RS16765	0.62	+0.6
3,804,399	+		PFLU_RS16765	0.62	-2.4
3,804,399	+		PFLU_RS16765	0.62	-3.1
3,804,399	+		PFLU_RS16765	0.62	+1.1
3,804,399	+		PFLU_RS16765	0.62	-0.5
3,804,400	-		PFLU_RS16765	0.62	+2.1
3,804,400	-		PFLU_RS16765	0.62	+0.9
3,804,519	+		PFLU_RS16765	0.75	-2.5
3,804,519	+		PFLU_RS16765	0.75	-0.1
3,804,520	-		PFLU_RS16765	0.75	+2.1
3,804,520	-		PFLU_RS16765	0.75	+0.1
3,804,520	-		PFLU_RS16765	0.75	-1.6
3,804,655	-				-0.7
3,804,707	+				-0.1
3,804,707	+				-1.7
3,804,785	+				+0.6
3,804,786	-				+0.5
3,804,848	+				+0.6
3,804,849	-				-1.7
3,804,849	-				+0.8
3,804,873	+				+1.4
3,804,873	+				+0.7
3,804,873	+				+1.6
3,804,873	+				+0.2
3,804,873	+				-0.7
3,804,873	+				-1.8
3,804,873	+				+3.5
3,804,873	+				-1.4
3,804,873	+				+2.1
3,804,873	+				-1.7
3,804,873	+				-0.8
3,804,873	+				-0.9
3,804,873	+				-1.6
3,804,873	+				-2.9
3,804,873	+				+1.6
3,804,873	+				+0.5
3,804,873	+				-1.4
3,804,873	+				-0.7
3,804,873	+				-0.2
3,804,873	+				-1.7
3,804,874	-				-0.5
3,804,874	-				+2.2
3,804,874	-				-2.4
3,804,874	-				-2.5
3,804,874	-				-0.3
3,804,874	-				+2.6
3,804,874	-				-1.9
3,804,874	-				+0.9
3,804,874	-				+0.7
3,804,874	-				-1.7
3,804,874	-				-0.8
3,804,874	-				-1.5
3,804,881	+				-1.9
3,804,882	-				-0.9
3,804,911	+				-2.0
3,804,911	+				-1.2
3,804,911	+				-1.4
3,804,911	+				+0.7
3,804,911	+				-0.2
3,804,911	+				+0.5
3,804,911	+				+0.5
3,804,911	+				+1.8
3,804,911	+				+2.5
3,804,911	+				+2.3
3,804,911	+				+1.4
3,804,912	-				+1.3
3,804,912	-				+1.2
3,804,912	-				-0.1
3,804,912	-				-2.5
3,804,912	-				+1.1
3,804,912	-				-1.9
3,804,912	-				-0.5
3,804,912	-				-1.7
3,804,912	-				-0.2
3,804,912	-				-2.2
3,804,914	+				-1.5
3,804,914	+				+1.6
3,804,914	+				-0.5
3,804,915	-				+2.1
3,804,915	-				+1.9
3,804,915	-				-2.5
3,804,915	-				+1.1
3,805,017	+		PFLU_RS16770	0.17	-1.6
3,805,018	-		PFLU_RS16770	0.17	-2.4
3,805,032	+		PFLU_RS16770	0.18	-0.7
3,805,087	+		PFLU_RS16770	0.22	+1.9
3,805,109	+		PFLU_RS16770	0.23	+0.3
3,805,110	-		PFLU_RS16770	0.23	+0.7
3,805,184	+		PFLU_RS16770	0.28	-0.0
3,805,206	+		PFLU_RS16770	0.30	-1.2
3,805,207	-		PFLU_RS16770	0.30	+1.7
3,805,211	+		PFLU_RS16770	0.30	-2.9
3,805,211	+		PFLU_RS16770	0.30	+2.0
3,805,211	+		PFLU_RS16770	0.30	-1.1
3,805,211	+		PFLU_RS16770	0.30	+1.9
3,805,211	+		PFLU_RS16770	0.30	+1.5
3,805,211	+		PFLU_RS16770	0.30	-2.2
3,805,211	+		PFLU_RS16770	0.30	+0.7
3,805,212	-		PFLU_RS16770	0.30	+1.7
3,805,212	-		PFLU_RS16770	0.30	+1.0
3,805,212	-		PFLU_RS16770	0.30	+0.5
3,805,260	-		PFLU_RS16770	0.34	+1.8
3,805,260	-		PFLU_RS16770	0.34	-0.9
3,805,260	-		PFLU_RS16770	0.34	-0.2
3,805,260	-		PFLU_RS16770	0.34	+0.9
3,805,319	+		PFLU_RS16770	0.38	+1.5
3,805,319	+		PFLU_RS16770	0.38	+3.7
3,805,319	+		PFLU_RS16770	0.38	+2.3
3,805,319	+		PFLU_RS16770	0.38	-1.4
3,805,319	+		PFLU_RS16770	0.38	+0.5
3,805,319	+		PFLU_RS16770	0.38	+1.2
3,805,319	+		PFLU_RS16770	0.38	-0.7
3,805,319	+		PFLU_RS16770	0.38	-0.7
3,805,319	+		PFLU_RS16770	0.38	-2.4
3,805,319	+		PFLU_RS16770	0.38	-1.4
3,805,319	+		PFLU_RS16770	0.38	+0.5
3,805,320	-		PFLU_RS16770	0.38	+2.4
3,805,320	-		PFLU_RS16770	0.38	+2.3
3,805,320	-		PFLU_RS16770	0.38	-0.3
3,805,320	-		PFLU_RS16770	0.38	+1.7
3,805,320	-		PFLU_RS16770	0.38	-1.7
3,805,320	-		PFLU_RS16770	0.38	+1.9
3,805,400	+		PFLU_RS16770	0.44	-1.8
3,805,490	+		PFLU_RS16770	0.50	-1.8
3,805,490	+		PFLU_RS16770	0.50	-0.9
3,805,490	+		PFLU_RS16770	0.50	-1.7
3,805,490	+		PFLU_RS16770	0.50	-2.8
3,805,490	+		PFLU_RS16770	0.50	+1.9
3,805,490	+		PFLU_RS16770	0.50	-2.1
3,805,490	+		PFLU_RS16770	0.50	-2.1
3,805,490	+		PFLU_RS16770	0.50	-0.5
3,805,491	-		PFLU_RS16770	0.50	-1.1
3,805,491	-		PFLU_RS16770	0.50	+0.7
3,805,491	-		PFLU_RS16770	0.50	-1.2
3,805,491	-		PFLU_RS16770	0.50	-1.9
3,805,491	-		PFLU_RS16770	0.50	+2.1
3,805,491	-		PFLU_RS16770	0.50	+2.4
3,805,491	-		PFLU_RS16770	0.50	-0.1
3,805,538	+		PFLU_RS16770	0.54	-0.6
3,805,539	-		PFLU_RS16770	0.54	-0.5
3,805,539	-		PFLU_RS16770	0.54	-1.2
3,805,539	-		PFLU_RS16770	0.54	+1.0
3,805,564	+		PFLU_RS16770	0.56	-1.3
3,805,564	+		PFLU_RS16770	0.56	+0.8
3,805,564	+		PFLU_RS16770	0.56	+0.4
3,805,564	+		PFLU_RS16770	0.56	-1.5
3,805,564	+		PFLU_RS16770	0.56	-1.8
3,805,564	+		PFLU_RS16770	0.56	+1.5
3,805,564	+		PFLU_RS16770	0.56	-1.7
3,805,564	+		PFLU_RS16770	0.56	-1.2
3,805,565	-		PFLU_RS16770	0.56	-1.2
3,805,565	-		PFLU_RS16770	0.56	-1.8
3,805,565	-		PFLU_RS16770	0.56	+0.5
3,805,565	-		PFLU_RS16770	0.56	-1.4
3,805,680	+		PFLU_RS16770	0.64	-2.5
3,805,715	+		PFLU_RS16770	0.66	-1.8
3,805,715	+		PFLU_RS16770	0.66	-1.2
3,805,716	-		PFLU_RS16770	0.66	-3.4
3,805,716	-		PFLU_RS16770	0.66	-2.2
3,805,716	-		PFLU_RS16770	0.66	+1.6
3,805,716	-		PFLU_RS16770	0.66	-1.7
3,805,716	-		PFLU_RS16770	0.66	-1.6
3,805,788	+		PFLU_RS16770	0.72	-2.7
3,805,788	+		PFLU_RS16770	0.72	+0.7
3,805,788	+		PFLU_RS16770	0.72	+2.0
3,805,789	-		PFLU_RS16770	0.72	-1.2
3,805,789	-		PFLU_RS16770	0.72	+0.1
3,805,789	-		PFLU_RS16770	0.72	-1.6
3,805,920	-		PFLU_RS16770	0.81	+1.0
3,805,920	-		PFLU_RS16770	0.81	+1.1
3,805,920	-		PFLU_RS16770	0.81	+0.1
3,805,979	+		PFLU_RS16770	0.85	-0.5
3,805,979	+		PFLU_RS16770	0.85	+0.4
3,806,013	-		PFLU_RS16770	0.88	-1.4
3,806,084	+				-0.7
3,806,084	+				-2.2
3,806,084	+				+1.3
3,806,084	+				-0.7
3,806,085	-				+0.9
3,806,085	-				+5.0
3,806,085	-				-1.9
3,806,085	-				+2.6
3,806,085	-				+0.4
3,806,085	-				+0.4
3,806,085	-				-0.2
3,806,132	+				-0.9
3,806,133	-				+1.1
3,806,136	+				-2.4
3,806,136	+				+0.4
3,806,136	+				-0.5
3,806,136	+				-0.2
3,806,136	+				-1.8
3,806,136	+				+1.8
3,806,136	+				+1.8
3,806,136	+				-1.4
3,806,136	+				+1.3
3,806,136	+				-1.9
3,806,136	+				+1.9
3,806,136	+				+0.5
3,806,137	-				-1.7
3,806,137	-				-0.9
3,806,137	-				-0.1
3,806,137	-				+2.8
3,806,137	-				-1.7
3,806,137	-				+2.6
3,806,137	-				-0.4
3,806,137	-				+0.8
3,806,137	-				-1.2
3,806,137	-				-0.6
3,806,137	-				-2.3
3,806,137	-				+2.2
3,806,137	-				-1.6
3,806,137	-				+0.9
3,806,140	+				+1.6
3,806,141	-				-1.7
3,806,141	-				-0.5
3,806,141	-				+0.1
3,806,209	+				-0.5
3,806,209	+				-0.2
3,806,210	-				+1.4
3,806,214	-				-1.6
3,806,214	-				+1.0
3,806,220	+				-1.6
3,806,220	+				+1.8
3,806,220	+				-2.0
3,806,220	+				-2.1
3,806,220	+				+1.0
3,806,220	+				-1.4
3,806,220	+				-1.9
3,806,220	+				+0.9
3,806,221	-				+2.1
3,806,221	-				+0.1
3,806,221	-				-0.7
3,806,221	-				-1.6
3,806,221	-				+1.1
3,806,221	-				+2.6
3,806,224	+				+2.3
3,806,257	+				+1.2
3,806,257	+				+1.8
3,806,257	+				-0.7
3,806,271	+				-0.9
3,806,300	+				-2.3
3,806,300	+				-0.5
3,806,300	+				-1.4
3,806,300	+				-1.8
3,806,300	+				+0.1
3,806,300	+				+1.5
3,806,300	+				+1.6
3,806,300	+				-0.0
3,806,300	+				+2.8
3,806,300	+				+2.6
3,806,300	+				+1.3
3,806,300	+				+0.5
3,806,300	+				+1.5
3,806,300	+				+0.1
3,806,300	+				-1.1
3,806,300	+				-0.4
3,806,300	+				-1.0
3,806,300	+				-2.8
3,806,300	+				+0.2
3,806,301	-				+2.1
3,806,301	-				-1.1
3,806,301	-				+2.6
3,806,301	-				-2.3
3,806,301	-				+1.8
3,806,301	-				-2.7
3,806,301	-				+1.3
3,806,301	-				-2.5
3,806,301	-				-2.4
3,806,301	-				-2.6
3,806,301	-				+2.4
3,806,301	-				+1.2
3,806,301	-				-0.7
3,806,301	-				-2.3
3,806,301	-				+2.1
3,806,301	-				-0.9
3,806,301	-				-0.5
3,806,301	-				-0.2
3,806,301	-				+0.9
3,806,301	-				+1.7
3,806,301	-				-1.7
3,806,302	+				+0.5
3,806,302	+				+1.2
3,806,302	+				-0.2
3,806,302	+				-1.1
3,806,302	+				+0.3
3,806,302	+				-1.0
3,806,302	+				-1.7
3,806,302	+				+1.1
3,806,302	+				-0.9
3,806,302	+				-1.2
3,806,302	+				+1.7
3,806,302	+				+2.3
3,806,302	+				-1.1
3,806,302	+				+1.6
3,806,302	+				-1.8
3,806,303	-				-0.3
3,806,303	-				-0.2
3,806,303	-				+2.1
3,806,303	-				-2.1
3,806,303	-				-1.6
3,806,303	-				-3.6
3,806,303	-				+0.3
3,806,303	-				+0.9
3,806,303	-				+1.4
3,806,303	-				-1.2
3,806,303	-				+0.9
3,806,303	-				+0.7
3,806,303	-				+5.1
3,806,303	-				-1.9
3,806,391	+		PFLU_RS16775	0.11	+0.5
3,806,391	+		PFLU_RS16775	0.11	-0.7
3,806,478	+		PFLU_RS16775	0.28	+1.7
3,806,478	+		PFLU_RS16775	0.28	-2.1
3,806,479	-		PFLU_RS16775	0.28	+3.1
3,806,479	-		PFLU_RS16775	0.28	+1.1
3,806,479	-		PFLU_RS16775	0.28	-1.9
3,806,543	-		PFLU_RS16775	0.40	+2.8
3,806,543	-		PFLU_RS16775	0.40	+2.5
3,806,543	-		PFLU_RS16775	0.40	-1.5
3,806,543	-		PFLU_RS16775	0.40	+2.0
3,806,605	+		PFLU_RS16775	0.52	+0.0
3,806,605	+		PFLU_RS16775	0.52	+1.0
3,806,605	+		PFLU_RS16775	0.52	+2.1
3,806,605	+		PFLU_RS16775	0.52	+1.9
3,806,606	-		PFLU_RS16775	0.52	+0.5
3,806,680	+		PFLU_RS16775	0.66	+0.0
3,806,833	+				+2.1
3,806,918	+				-2.1
3,806,929	+				+1.2
3,806,929	+				+0.9
3,806,946	+				-2.4
3,807,003	-				+2.0
3,807,023	+				-2.0
3,807,023	+				+0.8
3,807,023	+				-1.7
3,807,024	-				-1.4
3,807,024	-				-2.0
3,807,024	-				+0.9
3,807,027	+				+1.2
3,807,027	+				-0.7
3,807,028	-				+0.1
3,807,028	-				-1.5
3,807,163	+				+0.1
3,807,163	+				-1.4
3,807,163	+				-1.4
3,807,164	-				-1.6
3,807,164	-				+1.7
3,807,164	-				-0.5