Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12625

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
2,850,641	+				-0.7
2,850,641	+				+1.2
2,850,682	+		PFLU_RS12620	0.13	-2.3
2,850,683	-		PFLU_RS12620	0.13	-0.2
2,850,683	-		PFLU_RS12620	0.13	+0.9
2,850,718	+		PFLU_RS12620	0.17	+2.6
2,850,801	+		PFLU_RS12620	0.26	-1.7
2,850,802	-		PFLU_RS12620	0.26	+0.6
2,850,802	-		PFLU_RS12620	0.26	+1.8
2,850,994	+		PFLU_RS12620	0.46	+0.8
2,850,994	+		PFLU_RS12620	0.46	-1.9
2,850,994	+		PFLU_RS12620	0.46	-2.0
2,850,994	+		PFLU_RS12620	0.46	+0.4
2,850,994	+		PFLU_RS12620	0.46	-1.4
2,850,994	+		PFLU_RS12620	0.46	-0.9
2,850,995	-		PFLU_RS12620	0.47	+1.8
2,850,995	-		PFLU_RS12620	0.47	-1.9
2,850,995	-		PFLU_RS12620	0.47	-1.6
2,850,995	-		PFLU_RS12620	0.47	+2.1
2,851,106	-		PFLU_RS12620	0.58	+2.6
2,851,446	+				-0.4
2,851,446	+				+1.8
2,851,447	-				-1.4
2,851,447	-				-1.8
2,851,447	-				-1.3
2,851,492	+				-0.7
2,851,492	+				-0.3
2,851,492	+				+1.0
2,851,493	-				+1.1
2,851,493	-				+0.9
2,851,503	+				+1.3
2,851,503	+				+1.7
2,851,503	+				-2.6
2,851,503	+				+0.3
2,851,503	+				+0.8
2,851,503	+				-2.1
2,851,503	+				-2.7
2,851,503	+				+2.1
2,851,503	+				-2.1
2,851,503	+				-0.2
2,851,504	-				+0.7
2,851,504	-				-0.1
2,851,504	-				+2.1
2,851,504	-				+1.1
2,851,504	-				+2.4
2,851,504	-				-1.6
2,851,512	+				-2.2
2,851,512	+				+2.2
2,851,512	+				+1.9
2,851,512	+				-2.4
2,851,513	-				-1.4
2,851,552	-				-0.5
2,851,559	+				+0.3
2,851,560	-				+1.2
2,851,560	-				+2.1
2,851,560	-				+1.1
2,851,560	-				+1.6
2,851,623	+				+2.2
2,851,624	-				-2.6
2,851,697	-				-1.9
2,851,776	+		PFLU_RS12625	0.14	-0.7
2,851,776	+		PFLU_RS12625	0.14	-2.3
2,851,776	+		PFLU_RS12625	0.14	-0.1
2,851,777	-		PFLU_RS12625	0.14	-1.7
2,851,777	-		PFLU_RS12625	0.14	+1.3
2,851,777	-		PFLU_RS12625	0.14	+1.4
2,851,777	-		PFLU_RS12625	0.14	-2.7
2,851,777	-		PFLU_RS12625	0.14	-1.4
2,851,777	-		PFLU_RS12625	0.14	-3.3
2,851,822	+		PFLU_RS12625	0.17	-3.3
2,851,822	+		PFLU_RS12625	0.17	+3.7
2,851,823	-		PFLU_RS12625	0.17	+1.7
2,851,823	-		PFLU_RS12625	0.17	+0.1
2,851,823	-		PFLU_RS12625	0.17	+1.1
2,851,862	+		PFLU_RS12625	0.19	-0.7
2,851,863	-		PFLU_RS12625	0.19	+0.6
2,851,863	-		PFLU_RS12625	0.19	-0.8
2,852,089	-		PFLU_RS12625	0.34	-0.4
2,852,089	-		PFLU_RS12625	0.34	-2.1
2,852,202	+		PFLU_RS12625	0.41	-1.7
2,852,202	+		PFLU_RS12625	0.41	-2.7
2,852,203	-		PFLU_RS12625	0.41	-2.3
2,852,203	-		PFLU_RS12625	0.41	+0.3
2,852,203	-		PFLU_RS12625	0.41	+0.3
2,852,203	-		PFLU_RS12625	0.41	-0.1
2,852,213	+		PFLU_RS12625	0.42	+2.7
2,852,213	+		PFLU_RS12625	0.42	+1.7
2,852,214	-		PFLU_RS12625	0.42	+2.4
2,852,271	+		PFLU_RS12625	0.46	-2.6
2,852,271	+		PFLU_RS12625	0.46	-3.6
2,852,271	+		PFLU_RS12625	0.46	-1.6
2,852,271	+		PFLU_RS12625	0.46	+1.2
2,852,271	+		PFLU_RS12625	0.46	-1.8
2,852,271	+		PFLU_RS12625	0.46	+0.9
2,852,272	-		PFLU_RS12625	0.46	-1.8
2,852,272	-		PFLU_RS12625	0.46	-3.0
2,852,272	-		PFLU_RS12625	0.46	-0.9
2,852,272	-		PFLU_RS12625	0.46	+1.7
2,852,272	-		PFLU_RS12625	0.46	-1.2
2,852,272	-		PFLU_RS12625	0.46	-0.2
2,852,272	-		PFLU_RS12625	0.46	-1.8
2,852,272	-		PFLU_RS12625	0.46	+2.1
2,852,272	-		PFLU_RS12625	0.46	-2.2
2,852,272	-		PFLU_RS12625	0.46	+1.2
2,852,272	-		PFLU_RS12625	0.46	+1.4
2,852,273	+		PFLU_RS12625	0.46	-1.3
2,852,273	+		PFLU_RS12625	0.46	-2.3
2,852,273	+		PFLU_RS12625	0.46	-1.6
2,852,273	+		PFLU_RS12625	0.46	-1.9
2,852,273	+		PFLU_RS12625	0.46	+0.3
2,852,274	-		PFLU_RS12625	0.46	-1.6
2,852,571	-		PFLU_RS12625	0.65	-0.9
2,852,919	+		PFLU_RS12625	0.87	-1.1
2,852,920	-		PFLU_RS12625	0.88	-1.9
2,852,920	-		PFLU_RS12625	0.88	+3.1
2,852,920	-		PFLU_RS12625	0.88	-0.9
2,852,920	-		PFLU_RS12625	0.88	+2.0
2,853,116	+				+2.1
2,853,116	+				+2.0
2,853,116	+				-1.3
2,853,116	+				+0.2
2,853,633	+		PFLU_RS12630	0.48	+1.1
2,853,633	+		PFLU_RS12630	0.48	+2.5
2,853,634	-		PFLU_RS12630	0.48	+0.1
2,853,634	-		PFLU_RS12630	0.48	-3.3
2,853,634	-		PFLU_RS12630	0.48	+2.5
2,853,636	+		PFLU_RS12630	0.48	+2.8
2,853,637	-		PFLU_RS12630	0.48	-1.6
2,853,637	-		PFLU_RS12630	0.48	-1.9
2,853,637	-		PFLU_RS12630	0.48	-2.4
2,853,637	-		PFLU_RS12630	0.48	-1.6
2,853,675	+		PFLU_RS12630	0.52	-2.7
2,853,675	+		PFLU_RS12630	0.52	-2.0
2,853,710	+		PFLU_RS12630	0.56	-1.0
2,853,710	+		PFLU_RS12630	0.56	+3.3
2,853,710	+		PFLU_RS12630	0.56	-1.1
2,853,710	+		PFLU_RS12630	0.56	-0.9
2,853,710	+		PFLU_RS12630	0.56	-0.2
2,853,711	-		PFLU_RS12630	0.56	-0.7
2,853,711	-		PFLU_RS12630	0.56	-2.3
2,853,711	-		PFLU_RS12630	0.56	-1.0
2,853,762	+		PFLU_RS12630	0.61	+1.2
2,853,763	-		PFLU_RS12630	0.61	-1.4
2,853,763	-		PFLU_RS12630	0.61	+1.0
2,853,771	+		PFLU_RS12630	0.62	+0.1
2,853,771	+		PFLU_RS12630	0.62	-1.9
2,853,771	+		PFLU_RS12630	0.62	+1.3
2,853,771	+		PFLU_RS12630	0.62	-0.7
2,853,771	+		PFLU_RS12630	0.62	-2.5
2,853,771	+		PFLU_RS12630	0.62	-1.2
2,853,771	+		PFLU_RS12630	0.62	+3.1
2,853,771	+		PFLU_RS12630	0.62	+1.4
2,853,771	+		PFLU_RS12630	0.62	-1.8
2,853,771	+		PFLU_RS12630	0.62	-1.0
2,853,772	-		PFLU_RS12630	0.62	-0.2
2,853,772	-		PFLU_RS12630	0.62	+0.6
2,853,772	-		PFLU_RS12630	0.62	-1.2
2,853,772	-		PFLU_RS12630	0.62	+0.6
2,853,772	-		PFLU_RS12630	0.62	-1.7
2,853,772	-		PFLU_RS12630	0.62	-0.4
2,853,772	-		PFLU_RS12630	0.62	-1.0
2,853,772	-		PFLU_RS12630	0.62	-0.1
2,853,772	-		PFLU_RS12630	0.62	-1.8
2,853,772	-		PFLU_RS12630	0.62	+1.7
2,853,772	-		PFLU_RS12630	0.62	-1.2
2,853,772	-		PFLU_RS12630	0.62	-0.9
2,853,777	+		PFLU_RS12630	0.62	+1.2
2,853,777	+		PFLU_RS12630	0.62	-1.0
2,853,777	+		PFLU_RS12630	0.62	+0.9
2,853,777	+		PFLU_RS12630	0.62	-1.7
2,853,777	+		PFLU_RS12630	0.62	+1.3
2,853,777	+		PFLU_RS12630	0.62	+0.8
2,853,777	+		PFLU_RS12630	0.62	-1.0
2,853,777	+		PFLU_RS12630	0.62	-1.6
2,853,778	-		PFLU_RS12630	0.62	+2.0
2,853,778	-		PFLU_RS12630	0.62	-1.7
2,853,849	+		PFLU_RS12630	0.69	-0.7
2,853,849	+		PFLU_RS12630	0.69	-0.1
2,853,849	+		PFLU_RS12630	0.69	+2.6
2,853,850	-		PFLU_RS12630	0.69	-2.2
2,853,850	-		PFLU_RS12630	0.69	-0.2
2,853,936	+		PFLU_RS12630	0.78	-1.3
2,853,936	+		PFLU_RS12630	0.78	+0.6
2,853,936	+		PFLU_RS12630	0.78	+1.6
2,853,936	+		PFLU_RS12630	0.78	-0.1
2,853,937	-		PFLU_RS12630	0.78	+0.3
2,853,937	-		PFLU_RS12630	0.78	+2.6
2,853,937	-		PFLU_RS12630	0.78	-2.1
2,853,937	-		PFLU_RS12630	0.78	-2.3
2,853,937	-		PFLU_RS12630	0.78	-2.2
2,853,937	-		PFLU_RS12630	0.78	-2.4
2,854,010	+		PFLU_RS12630	0.85	-0.9
2,854,055	+		PFLU_RS12630	0.89	+0.6
2,854,055	+		PFLU_RS12630	0.89	-0.4
2,854,077	+				+0.9
2,854,077	+				-2.4
2,854,077	+				-0.2
2,854,077	+				-1.3
2,854,077	+				+2.1
2,854,077	+				+1.9
2,854,077	+				+0.1
2,854,077	+				+1.3
2,854,077	+				-1.4
2,854,077	+				-2.3
2,854,077	+				+0.2
2,854,077	+				-0.4
2,854,078	-				-1.4
2,854,078	-				-1.4
2,854,078	-				+0.1
2,854,078	-				-1.8
2,854,078	-				+1.5
2,854,078	-				-1.4
2,854,078	-				-1.7
2,854,080	-				-0.2