Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12910

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
2,915,133	+		PFLU_RS12905	0.42	+1.2
2,915,169	+		PFLU_RS12905	0.44	+0.7
2,915,169	+		PFLU_RS12905	0.44	-0.5
2,915,220	+		PFLU_RS12905	0.48	+0.2
2,915,220	+		PFLU_RS12905	0.48	+0.9
2,915,220	+		PFLU_RS12905	0.48	-0.2
2,915,220	+		PFLU_RS12905	0.48	+0.0
2,915,220	+		PFLU_RS12905	0.48	+1.1
2,915,220	+		PFLU_RS12905	0.48	+1.8
2,915,220	+		PFLU_RS12905	0.48	+1.1
2,915,220	+		PFLU_RS12905	0.48	-0.3
2,915,220	+		PFLU_RS12905	0.48	-0.5
2,915,220	+		PFLU_RS12905	0.48	+0.6
2,915,220	+		PFLU_RS12905	0.48	+0.1
2,915,221	-		PFLU_RS12905	0.48	-1.8
2,915,221	-		PFLU_RS12905	0.48	+1.1
2,915,221	-		PFLU_RS12905	0.48	+0.1
2,915,221	-		PFLU_RS12905	0.48	-0.1
2,915,221	-		PFLU_RS12905	0.48	+0.5
2,915,221	-		PFLU_RS12905	0.48	-1.5
2,915,221	-		PFLU_RS12905	0.48	+0.6
2,915,221	-		PFLU_RS12905	0.48	+0.8
2,915,325	+		PFLU_RS12905	0.55	+1.1
2,915,325	+		PFLU_RS12905	0.55	+0.4
2,915,326	-		PFLU_RS12905	0.55	+0.2
2,915,382	+		PFLU_RS12905	0.59	-2.5
2,915,383	-		PFLU_RS12905	0.59	+0.4
2,915,383	-		PFLU_RS12905	0.59	-1.1
2,915,383	-		PFLU_RS12905	0.59	+0.4
2,915,458	-		PFLU_RS12905	0.65	-0.0
2,915,458	-		PFLU_RS12905	0.65	+0.1
2,915,511	+		PFLU_RS12905	0.69	+1.0
2,915,512	-		PFLU_RS12905	0.69	+0.8
2,915,526	+		PFLU_RS12905	0.70	+1.8
2,915,526	+		PFLU_RS12905	0.70	-0.2
2,915,526	+		PFLU_RS12905	0.70	+0.8
2,915,526	+		PFLU_RS12905	0.70	+2.7
2,915,526	+		PFLU_RS12905	0.70	+0.4
2,915,526	+		PFLU_RS12905	0.70	+1.1
2,915,527	-		PFLU_RS12905	0.70	-0.7
2,915,527	-		PFLU_RS12905	0.70	+0.6
2,915,527	-		PFLU_RS12905	0.70	-0.3
2,915,527	-		PFLU_RS12905	0.70	-0.4
2,915,598	+		PFLU_RS12905	0.75	+0.5
2,915,598	+		PFLU_RS12905	0.75	-0.1
2,915,598	+		PFLU_RS12905	0.75	+3.1
2,915,598	+		PFLU_RS12905	0.75	-0.6
2,915,598	+		PFLU_RS12905	0.75	+0.9
2,915,598	+		PFLU_RS12905	0.75	-0.6
2,915,598	+		PFLU_RS12905	0.75	-0.3
2,915,598	+		PFLU_RS12905	0.75	+0.4
2,915,598	+		PFLU_RS12905	0.75	-0.4
2,915,598	+		PFLU_RS12905	0.75	-0.1
2,915,598	+		PFLU_RS12905	0.75	+0.3
2,915,599	-		PFLU_RS12905	0.75	+0.7
2,915,599	-		PFLU_RS12905	0.75	-0.9
2,915,599	-		PFLU_RS12905	0.75	+1.5
2,915,599	-		PFLU_RS12905	0.75	-0.2
2,915,599	-		PFLU_RS12905	0.75	+0.9
2,915,599	-		PFLU_RS12905	0.75	-0.1
2,915,599	-		PFLU_RS12905	0.75	-0.3
2,915,599	-		PFLU_RS12905	0.75	-0.3
2,915,599	-		PFLU_RS12905	0.75	+0.7
2,915,607	+		PFLU_RS12905	0.75	+0.2
2,915,607	+		PFLU_RS12905	0.75	-1.9
2,915,607	+		PFLU_RS12905	0.75	+0.3
2,915,608	-		PFLU_RS12905	0.75	+0.4
2,915,608	-		PFLU_RS12905	0.75	+2.1
2,915,608	-		PFLU_RS12905	0.75	+0.9
2,915,608	-		PFLU_RS12905	0.75	-1.5
2,915,608	-		PFLU_RS12905	0.75	+1.1
2,915,696	+		PFLU_RS12905	0.82	+0.8
2,915,696	+		PFLU_RS12905	0.82	+0.7
2,915,697	-		PFLU_RS12905	0.82	+0.5
2,915,697	-		PFLU_RS12905	0.82	-0.1
2,915,697	-		PFLU_RS12905	0.82	+1.1
2,915,944	+				-0.7
2,915,944	+				+1.1
2,915,945	-				-0.6
2,915,945	-				-0.1
2,915,945	-				+1.5
2,915,945	-				+0.7
2,915,945	-				+0.5
2,915,945	-				-0.1
2,915,945	-				+0.5
2,915,945	-				-0.9
2,915,967	+				+0.6
2,915,968	-				-0.3
2,915,968	-				-0.9
2,915,968	-				-0.1
2,916,034	+				-1.2
2,916,034	+				+1.1
2,916,035	-				+0.3
2,916,035	-				-0.9
2,916,038	+				+0.6
2,916,056	+				+0.2
2,916,063	+				-0.1
2,916,063	+				+2.3
2,916,064	-				-1.3
2,916,064	-				+0.5
2,916,064	-				-0.0
2,916,064	-				-0.2
2,916,064	-				-0.5
2,916,064	-				+0.6
2,916,084	+				-0.3
2,916,084	+				+0.5
2,916,084	+				-0.1
2,916,085	-				-0.6
2,916,085	-				+0.9
2,916,085	-				+2.4
2,916,085	-				+1.1
2,916,085	-				+0.1
2,916,085	-				-0.9
2,916,085	-				-0.5
2,916,085	-				+0.1
2,916,085	-				+0.9
2,916,162	+		PFLU_RS12910	0.14	-0.9
2,916,162	+		PFLU_RS12910	0.14	+0.1
2,916,163	-		PFLU_RS12910	0.14	-0.6
2,916,163	-		PFLU_RS12910	0.14	-0.2
2,916,163	-		PFLU_RS12910	0.14	-0.4
2,916,166	+		PFLU_RS12910	0.14	-0.9
2,916,166	+		PFLU_RS12910	0.14	+0.4
2,916,166	+		PFLU_RS12910	0.14	-0.1
2,916,166	+		PFLU_RS12910	0.14	-0.6
2,916,166	+		PFLU_RS12910	0.14	-2.1
2,916,166	+		PFLU_RS12910	0.14	+1.4
2,916,166	+		PFLU_RS12910	0.14	+0.2
2,916,166	+		PFLU_RS12910	0.14	-0.4
2,916,166	+		PFLU_RS12910	0.14	-0.4
2,916,166	+		PFLU_RS12910	0.14	-2.6
2,916,167	-		PFLU_RS12910	0.15	-1.5
2,916,167	-		PFLU_RS12910	0.15	-0.4
2,916,167	-		PFLU_RS12910	0.15	+0.8
2,916,167	-		PFLU_RS12910	0.15	+1.3
2,916,167	-		PFLU_RS12910	0.15	-2.0
2,916,306	+		PFLU_RS12910	0.33	-0.0
2,916,307	-		PFLU_RS12910	0.33	-0.2
2,916,317	+		PFLU_RS12910	0.34	+0.6
2,916,317	+		PFLU_RS12910	0.34	+1.1
2,916,317	+		PFLU_RS12910	0.34	-1.6
2,916,317	+		PFLU_RS12910	0.34	-1.3
2,916,317	+		PFLU_RS12910	0.34	-1.0
2,916,317	+		PFLU_RS12910	0.34	+0.5
2,916,317	+		PFLU_RS12910	0.34	-0.6
2,916,318	-		PFLU_RS12910	0.34	-1.7
2,916,318	-		PFLU_RS12910	0.34	+0.3
2,916,318	-		PFLU_RS12910	0.34	-1.5
2,916,318	-		PFLU_RS12910	0.34	+1.1
2,916,332	+		PFLU_RS12910	0.36	+0.4
2,916,332	+		PFLU_RS12910	0.36	-1.9
2,916,332	+		PFLU_RS12910	0.36	-0.2
2,916,380	+		PFLU_RS12910	0.42	-2.7
2,916,380	+		PFLU_RS12910	0.42	+0.1
2,916,380	+		PFLU_RS12910	0.42	-3.2
2,916,380	+		PFLU_RS12910	0.42	-2.5
2,916,380	+		PFLU_RS12910	0.42	-0.3
2,916,380	+		PFLU_RS12910	0.42	-1.2
2,916,380	+		PFLU_RS12910	0.42	-1.6
2,916,380	+		PFLU_RS12910	0.42	-0.1
2,916,380	+		PFLU_RS12910	0.42	+0.7
2,916,380	+		PFLU_RS12910	0.42	-1.9
2,916,380	+		PFLU_RS12910	0.42	+0.5
2,916,380	+		PFLU_RS12910	0.42	+0.8
2,916,380	+		PFLU_RS12910	0.42	-1.5
2,916,380	+		PFLU_RS12910	0.42	-0.9
2,916,380	+		PFLU_RS12910	0.42	-0.2
2,916,380	+		PFLU_RS12910	0.42	-0.7
2,916,380	+		PFLU_RS12910	0.42	-0.3
2,916,380	+		PFLU_RS12910	0.42	-1.5
2,916,380	+		PFLU_RS12910	0.42	-2.9
2,916,380	+		PFLU_RS12910	0.42	+0.0
2,916,380	+		PFLU_RS12910	0.42	+0.1
2,916,380	+		PFLU_RS12910	0.42	-0.5
2,916,380	+		PFLU_RS12910	0.42	+1.1
2,916,380	+		PFLU_RS12910	0.42	-0.1
2,916,380	+		PFLU_RS12910	0.42	-1.5
2,916,380	+		PFLU_RS12910	0.42	+0.8
2,916,380	+		PFLU_RS12910	0.42	-0.9
2,916,380	+		PFLU_RS12910	0.42	-0.2
2,916,381	-		PFLU_RS12910	0.42	-2.0
2,916,381	-		PFLU_RS12910	0.42	+1.1
2,916,381	-		PFLU_RS12910	0.42	-0.1
2,916,381	-		PFLU_RS12910	0.42	-1.3
2,916,381	-		PFLU_RS12910	0.42	-2.9
2,916,381	-		PFLU_RS12910	0.42	+0.5
2,916,381	-		PFLU_RS12910	0.42	+0.5
2,916,381	-		PFLU_RS12910	0.42	+0.3
2,916,381	-		PFLU_RS12910	0.42	+0.3
2,916,381	-		PFLU_RS12910	0.42	+0.0
2,916,381	-		PFLU_RS12910	0.42	+0.4
2,916,381	-		PFLU_RS12910	0.42	+1.6
2,916,381	-		PFLU_RS12910	0.42	+0.7
2,916,381	-		PFLU_RS12910	0.42	-1.1
2,916,381	-		PFLU_RS12910	0.42	-0.5
2,916,381	-		PFLU_RS12910	0.42	-0.8
2,916,381	-		PFLU_RS12910	0.42	+1.8
2,916,381	-		PFLU_RS12910	0.42	+1.7
2,916,381	-		PFLU_RS12910	0.42	-0.1
2,916,381	-		PFLU_RS12910	0.42	-1.3
2,916,381	-		PFLU_RS12910	0.42	-0.1
2,916,381	-		PFLU_RS12910	0.42	-0.9
2,916,381	-		PFLU_RS12910	0.42	-0.8
2,916,381	-		PFLU_RS12910	0.42	+2.1
2,916,464	+		PFLU_RS12910	0.53	-0.3
2,916,465	-		PFLU_RS12910	0.53	+0.2
2,916,474	+		PFLU_RS12910	0.55	-3.1
2,916,501	+		PFLU_RS12910	0.58	+1.2
2,916,501	+		PFLU_RS12910	0.58	-1.6
2,916,501	+		PFLU_RS12910	0.58	+1.5
2,916,501	+		PFLU_RS12910	0.58	+0.7
2,916,501	+		PFLU_RS12910	0.58	-0.3
2,916,501	+		PFLU_RS12910	0.58	-1.1
2,916,501	+		PFLU_RS12910	0.58	+0.6
2,916,502	-		PFLU_RS12910	0.58	-0.8
2,916,502	-		PFLU_RS12910	0.58	-0.8
2,916,502	-		PFLU_RS12910	0.58	+0.2
2,916,503	+		PFLU_RS12910	0.58	+0.1
2,916,503	+		PFLU_RS12910	0.58	-0.4
2,916,503	+		PFLU_RS12910	0.58	-0.8
2,916,503	+		PFLU_RS12910	0.58	-1.0
2,916,503	+		PFLU_RS12910	0.58	-0.0
2,916,503	+		PFLU_RS12910	0.58	+0.6
2,916,503	+		PFLU_RS12910	0.58	-0.8
2,916,503	+		PFLU_RS12910	0.58	-0.0
2,916,503	+		PFLU_RS12910	0.58	-0.6
2,916,503	+		PFLU_RS12910	0.58	+0.5
2,916,503	+		PFLU_RS12910	0.58	+0.5
2,916,503	+		PFLU_RS12910	0.58	-0.5
2,916,503	+		PFLU_RS12910	0.58	-0.2
2,916,503	+		PFLU_RS12910	0.58	-3.7
2,916,503	+		PFLU_RS12910	0.58	-1.3
2,916,503	+		PFLU_RS12910	0.58	-2.3
2,916,503	+		PFLU_RS12910	0.58	-0.5
2,916,504	-		PFLU_RS12910	0.58	-0.3
2,916,504	-		PFLU_RS12910	0.58	-0.2
2,916,504	-		PFLU_RS12910	0.58	+0.2
2,916,504	-		PFLU_RS12910	0.58	+3.1
2,916,504	-		PFLU_RS12910	0.58	-0.6
2,916,504	-		PFLU_RS12910	0.58	+0.6
2,916,504	-		PFLU_RS12910	0.58	-0.6
2,916,504	-		PFLU_RS12910	0.58	-0.0
2,916,504	-		PFLU_RS12910	0.58	+0.0
2,916,504	-		PFLU_RS12910	0.58	+0.0
2,916,504	-		PFLU_RS12910	0.58	-1.0
2,916,504	-		PFLU_RS12910	0.58	-0.5
2,916,504	-		PFLU_RS12910	0.58	-0.9
2,916,504	-		PFLU_RS12910	0.58	-1.4
2,916,527	-		PFLU_RS12910	0.61	+0.2
2,916,610	-		PFLU_RS12910	0.72	+0.4
2,916,769	+				-1.5
2,916,770	-				-2.6
2,916,782	+				+1.1
2,916,782	+				-1.1
2,916,782	+				-0.2
2,916,782	+				-0.0
2,916,782	+				-0.4
2,916,782	+				+0.2
2,916,782	+				-0.7
2,916,782	+				-0.4
2,916,782	+				-2.2
2,916,782	+				+0.2
2,916,782	+				-1.2
2,916,782	+				-0.3
2,916,782	+				+0.2
2,916,782	+				+0.2
2,916,782	+				-1.1
2,916,782	+				-0.9
2,916,782	+				+0.1
2,916,782	+				-1.5
2,916,782	+				-1.5
2,916,782	+				+0.4
2,916,782	+				-0.4
2,916,782	+				-1.3
2,916,782	+				-0.9
2,916,782	+				+0.4
2,916,782	+				+0.6
2,916,783	-				-0.1
2,916,783	-				-0.9
2,916,783	-				+0.9
2,916,783	-				-0.5
2,916,783	-				+0.2
2,916,783	-				-0.5
2,916,783	-				+0.3
2,916,783	-				+1.0
2,916,783	-				-0.6
2,916,783	-				+1.1
2,916,783	-				-1.1
2,916,783	-				-0.3
2,916,783	-				+0.8
2,916,783	-				-0.7
2,916,783	-				+0.4
2,916,783	-				+1.1
2,916,783	-				+0.2
2,916,783	-				+0.4
2,916,783	-				-0.7
2,916,783	-				-0.8
2,916,783	-				+1.5
2,916,817	+				+1.0
2,916,817	+				+1.1
2,916,817	+				-0.5
2,916,817	+				-0.2
2,916,817	+				-2.1
2,916,817	+				-0.1
2,916,817	+				-0.1
2,916,818	-				-0.1
2,916,859	+				-1.6
2,916,859	+				-1.7
2,916,859	+				+0.6
2,916,859	+				+0.1
2,916,859	+				-1.5
2,916,859	+				+0.3
2,916,859	+				-1.0
2,916,859	+				-1.0
2,916,860	-				+0.1
2,916,860	-				+1.1
2,916,860	-				+0.1
2,916,860	-				-0.2
2,916,860	-				+0.2
2,916,860	-				-1.5
2,916,868	+				+0.1
2,916,869	-				-0.3
2,916,897	-				-0.3
2,916,897	-				-0.2
2,916,897	-				+2.0
2,917,428	+		PFLU_RS12915	0.70	-1.9
2,917,521	+		PFLU_RS12915	0.82	+1.4
2,917,521	+		PFLU_RS12915	0.82	+0.1
2,917,521	+		PFLU_RS12915	0.82	+0.3
2,917,521	+		PFLU_RS12915	0.82	-1.0
2,917,521	+		PFLU_RS12915	0.82	+1.1
2,917,521	+		PFLU_RS12915	0.82	+0.4
2,917,522	-		PFLU_RS12915	0.82	-0.7
2,917,522	-		PFLU_RS12915	0.82	-0.4
2,917,522	-		PFLU_RS12915	0.82	+0.2
2,917,522	-		PFLU_RS12915	0.82	+2.1
2,917,690	+				-1.9
2,917,690	+				+0.1
2,917,691	-				+0.1
2,917,691	-				+1.1
2,917,691	-				-0.5
2,917,691	-				+1.1
2,917,691	-				+0.7