Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20575

Experiment: Glucose (C) and L-Glutamine (N); with TAPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS20565 and PFLU_RS20570 are separated by 53 nucleotidesPFLU_RS20570 and PFLU_RS20575 are separated by 146 nucleotidesPFLU_RS20575 and PFLU_RS20580 are separated by 10 nucleotides PFLU_RS20565: PFLU_RS20565 - 3-isopropylmalate dehydrogenase, at 4,631,941 to 4,633,023 _RS20565 PFLU_RS20570: PFLU_RS20570 - class I SAM-dependent methyltransferase, at 4,633,077 to 4,633,841 _RS20570 PFLU_RS20575: PFLU_RS20575 - 3-isopropylmalate dehydratase small subunit, at 4,633,988 to 4,634,632 _RS20575 PFLU_RS20580: PFLU_RS20580 - 3-isopropylmalate dehydratase large subunit, at 4,634,643 to 4,636,061 _RS20580 Position (kb) 4633 4634 4635Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4633.141 kb on + strandat 4633.141 kb on + strandat 4633.234 kb on + strand, within PFLU_RS20570at 4633.234 kb on + strand, within PFLU_RS20570at 4633.234 kb on + strand, within PFLU_RS20570at 4633.234 kb on + strand, within PFLU_RS20570at 4633.234 kb on + strand, within PFLU_RS20570at 4633.235 kb on - strand, within PFLU_RS20570at 4633.235 kb on - strand, within PFLU_RS20570at 4633.235 kb on - strand, within PFLU_RS20570at 4633.235 kb on - strand, within PFLU_RS20570at 4633.235 kb on - strand, within PFLU_RS20570at 4633.235 kb on - strand, within PFLU_RS20570at 4633.259 kb on + strand, within PFLU_RS20570at 4633.318 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.366 kb on + strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.367 kb on - strand, within PFLU_RS20570at 4633.551 kb on + strand, within PFLU_RS20570at 4633.552 kb on - strand, within PFLU_RS20570at 4633.582 kb on - strand, within PFLU_RS20570at 4633.627 kb on + strand, within PFLU_RS20570at 4633.627 kb on + strand, within PFLU_RS20570at 4633.627 kb on + strand, within PFLU_RS20570at 4633.628 kb on - strand, within PFLU_RS20570at 4633.628 kb on - strand, within PFLU_RS20570at 4633.628 kb on - strand, within PFLU_RS20570at 4633.628 kb on - strand, within PFLU_RS20570at 4633.628 kb on - strand, within PFLU_RS20570at 4633.628 kb on - strand, within PFLU_RS20570at 4633.628 kb on - strand, within PFLU_RS20570at 4633.658 kb on + strand, within PFLU_RS20570at 4633.658 kb on + strand, within PFLU_RS20570at 4633.658 kb on + strand, within PFLU_RS20570at 4633.659 kb on - strand, within PFLU_RS20570at 4633.734 kb on + strand, within PFLU_RS20570at 4633.735 kb on - strand, within PFLU_RS20570at 4633.764 kb on + strand, within PFLU_RS20570at 4633.781 kb on - strandat 4633.872 kb on + strandat 4633.873 kb on - strandat 4633.873 kb on - strandat 4633.873 kb on - strandat 4633.873 kb on - strandat 4633.979 kb on + strandat 4633.979 kb on + strandat 4633.979 kb on + strandat 4633.979 kb on + strandat 4633.979 kb on + strandat 4633.979 kb on + strandat 4633.980 kb on - strandat 4633.980 kb on - strandat 4633.980 kb on - strandat 4633.980 kb on - strandat 4633.980 kb on - strandat 4633.980 kb on - strandat 4633.980 kb on - strandat 4633.987 kb on - strandat 4634.133 kb on + strand, within PFLU_RS20575at 4634.133 kb on + strand, within PFLU_RS20575at 4634.133 kb on + strand, within PFLU_RS20575at 4634.133 kb on + strand, within PFLU_RS20575at 4634.133 kb on + strand, within PFLU_RS20575at 4634.133 kb on + strand, within PFLU_RS20575at 4634.134 kb on - strand, within PFLU_RS20575at 4634.134 kb on - strand, within PFLU_RS20575at 4634.134 kb on - strand, within PFLU_RS20575at 4634.298 kb on + strand, within PFLU_RS20575at 4634.299 kb on - strand, within PFLU_RS20575at 4634.299 kb on - strand, within PFLU_RS20575at 4634.328 kb on + strand, within PFLU_RS20575at 4634.328 kb on + strand, within PFLU_RS20575at 4634.328 kb on + strand, within PFLU_RS20575at 4634.412 kb on + strand, within PFLU_RS20575at 4634.470 kb on - strand, within PFLU_RS20575at 4634.476 kb on - strand, within PFLU_RS20575at 4634.476 kb on - strand, within PFLU_RS20575at 4634.620 kb on + strandat 4634.620 kb on + strandat 4634.620 kb on + strandat 4634.620 kb on + strandat 4634.621 kb on - strandat 4634.638 kb on - strandat 4634.753 kb on + strandat 4634.753 kb on + strandat 4634.754 kb on - strandat 4635.021 kb on + strand, within PFLU_RS20580at 4635.021 kb on + strand, within PFLU_RS20580at 4635.021 kb on + strand, within PFLU_RS20580at 4635.021 kb on + strand, within PFLU_RS20580at 4635.022 kb on - strand, within PFLU_RS20580at 4635.022 kb on - strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.073 kb on + strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.074 kb on - strand, within PFLU_RS20580at 4635.123 kb on - strand, within PFLU_RS20580at 4635.322 kb on + strand, within PFLU_RS20580at 4635.322 kb on + strand, within PFLU_RS20580at 4635.322 kb on + strand, within PFLU_RS20580at 4635.322 kb on + strand, within PFLU_RS20580at 4635.323 kb on - strand, within PFLU_RS20580at 4635.323 kb on - strand, within PFLU_RS20580at 4635.323 kb on - strand, within PFLU_RS20580at 4635.323 kb on - strand, within PFLU_RS20580at 4635.323 kb on - strand, within PFLU_RS20580at 4635.323 kb on - strand, within PFLU_RS20580at 4635.470 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.551 kb on + strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580at 4635.552 kb on - strand, within PFLU_RS20580

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and L-Glutamine (N); with TAPS; with chloride
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4,633,141 + -0.8
4,633,141 + -0.7
4,633,234 + PFLU_RS20570 0.21 -0.5
4,633,234 + PFLU_RS20570 0.21 +0.2
4,633,234 + PFLU_RS20570 0.21 -1.0
4,633,234 + PFLU_RS20570 0.21 +0.3
4,633,234 + PFLU_RS20570 0.21 +1.3
4,633,235 - PFLU_RS20570 0.21 +0.8
4,633,235 - PFLU_RS20570 0.21 +0.1
4,633,235 - PFLU_RS20570 0.21 +0.2
4,633,235 - PFLU_RS20570 0.21 -0.5
4,633,235 - PFLU_RS20570 0.21 +0.7
4,633,235 - PFLU_RS20570 0.21 -0.1
4,633,259 + PFLU_RS20570 0.24 +0.1
4,633,318 + PFLU_RS20570 0.32 +0.0
4,633,366 + PFLU_RS20570 0.38 -0.3
4,633,366 + PFLU_RS20570 0.38 -0.7
4,633,366 + PFLU_RS20570 0.38 +0.9
4,633,366 + PFLU_RS20570 0.38 -1.2
4,633,366 + PFLU_RS20570 0.38 -0.5
4,633,366 + PFLU_RS20570 0.38 +1.1
4,633,366 + PFLU_RS20570 0.38 -1.3
4,633,366 + PFLU_RS20570 0.38 +0.3
4,633,367 - PFLU_RS20570 0.38 -1.8
4,633,367 - PFLU_RS20570 0.38 -0.3
4,633,367 - PFLU_RS20570 0.38 -2.1
4,633,367 - PFLU_RS20570 0.38 +0.7
4,633,367 - PFLU_RS20570 0.38 +0.0
4,633,367 - PFLU_RS20570 0.38 +0.8
4,633,367 - PFLU_RS20570 0.38 +0.1
4,633,367 - PFLU_RS20570 0.38 -0.2
4,633,367 - PFLU_RS20570 0.38 +0.8
4,633,367 - PFLU_RS20570 0.38 -0.7
4,633,367 - PFLU_RS20570 0.38 -1.5
4,633,551 + PFLU_RS20570 0.62 -0.1
4,633,552 - PFLU_RS20570 0.62 -0.3
4,633,582 - PFLU_RS20570 0.66 +1.3
4,633,627 + PFLU_RS20570 0.72 -0.1
4,633,627 + PFLU_RS20570 0.72 +0.2
4,633,627 + PFLU_RS20570 0.72 +1.2
4,633,628 - PFLU_RS20570 0.72 -0.3
4,633,628 - PFLU_RS20570 0.72 -2.0
4,633,628 - PFLU_RS20570 0.72 +1.7
4,633,628 - PFLU_RS20570 0.72 -0.1
4,633,628 - PFLU_RS20570 0.72 +2.2
4,633,628 - PFLU_RS20570 0.72 +1.0
4,633,628 - PFLU_RS20570 0.72 -1.2
4,633,658 + PFLU_RS20570 0.76 -1.3
4,633,658 + PFLU_RS20570 0.76 +0.9
4,633,658 + PFLU_RS20570 0.76 -1.2
4,633,659 - PFLU_RS20570 0.76 -0.2
4,633,734 + PFLU_RS20570 0.86 -0.3
4,633,735 - PFLU_RS20570 0.86 +0.9
4,633,764 + PFLU_RS20570 0.90 +1.5
4,633,781 - -1.9
4,633,872 + +0.8
4,633,873 - +1.1
4,633,873 - +0.2
4,633,873 - -0.1
4,633,873 - +2.7
4,633,979 + +0.2
4,633,979 + +0.5
4,633,979 + +0.1
4,633,979 + -1.5
4,633,979 + +0.5
4,633,979 + +0.2
4,633,980 - -1.9
4,633,980 - -0.2
4,633,980 - -1.3
4,633,980 - -0.8
4,633,980 - -0.9
4,633,980 - -0.3
4,633,980 - +0.1
4,633,987 - +0.3
4,634,133 + PFLU_RS20575 0.22 -3.5
4,634,133 + PFLU_RS20575 0.22 -2.3
4,634,133 + PFLU_RS20575 0.22 -0.9
4,634,133 + PFLU_RS20575 0.22 -3.4
4,634,133 + PFLU_RS20575 0.22 -3.5
4,634,133 + PFLU_RS20575 0.22 -3.9
4,634,134 - PFLU_RS20575 0.23 -2.9
4,634,134 - PFLU_RS20575 0.23 -3.1
4,634,134 - PFLU_RS20575 0.23 -1.7
4,634,298 + PFLU_RS20575 0.48 -2.4
4,634,299 - PFLU_RS20575 0.48 -2.2
4,634,299 - PFLU_RS20575 0.48 -3.9
4,634,328 + PFLU_RS20575 0.53 -2.0
4,634,328 + PFLU_RS20575 0.53 -3.1
4,634,328 + PFLU_RS20575 0.53 -1.7
4,634,412 + PFLU_RS20575 0.66 -1.5
4,634,470 - PFLU_RS20575 0.75 -3.5
4,634,476 - PFLU_RS20575 0.76 -2.4
4,634,476 - PFLU_RS20575 0.76 -2.1
4,634,620 + -1.5
4,634,620 + -2.0
4,634,620 + -2.1
4,634,620 + -3.9
4,634,621 - -2.8
4,634,638 - -0.7
4,634,753 + -1.5
4,634,753 + -2.6
4,634,754 - -3.5
4,635,021 + PFLU_RS20580 0.27 -2.2
4,635,021 + PFLU_RS20580 0.27 -2.7
4,635,021 + PFLU_RS20580 0.27 -2.0
4,635,021 + PFLU_RS20580 0.27 -2.5
4,635,022 - PFLU_RS20580 0.27 -0.7
4,635,022 - PFLU_RS20580 0.27 -3.2
4,635,073 + PFLU_RS20580 0.30 -1.1
4,635,073 + PFLU_RS20580 0.30 -1.7
4,635,073 + PFLU_RS20580 0.30 +0.7
4,635,073 + PFLU_RS20580 0.30 -2.5
4,635,073 + PFLU_RS20580 0.30 -2.1
4,635,073 + PFLU_RS20580 0.30 -0.3
4,635,073 + PFLU_RS20580 0.30 -1.1
4,635,073 + PFLU_RS20580 0.30 -2.2
4,635,073 + PFLU_RS20580 0.30 -0.7
4,635,073 + PFLU_RS20580 0.30 -1.3
4,635,073 + PFLU_RS20580 0.30 -1.7
4,635,073 + PFLU_RS20580 0.30 -2.2
4,635,073 + PFLU_RS20580 0.30 -0.6
4,635,074 - PFLU_RS20580 0.30 -2.7
4,635,074 - PFLU_RS20580 0.30 -2.9
4,635,074 - PFLU_RS20580 0.30 -1.3
4,635,074 - PFLU_RS20580 0.30 -1.9
4,635,074 - PFLU_RS20580 0.30 -3.1
4,635,074 - PFLU_RS20580 0.30 -2.7
4,635,074 - PFLU_RS20580 0.30 -4.8
4,635,074 - PFLU_RS20580 0.30 -2.6
4,635,074 - PFLU_RS20580 0.30 -1.7
4,635,074 - PFLU_RS20580 0.30 -3.3
4,635,074 - PFLU_RS20580 0.30 -3.1
4,635,074 - PFLU_RS20580 0.30 -2.4
4,635,074 - PFLU_RS20580 0.30 -2.0
4,635,123 - PFLU_RS20580 0.34 -2.8
4,635,322 + PFLU_RS20580 0.48 -2.7
4,635,322 + PFLU_RS20580 0.48 -2.6
4,635,322 + PFLU_RS20580 0.48 -2.8
4,635,322 + PFLU_RS20580 0.48 -3.1
4,635,323 - PFLU_RS20580 0.48 -3.6
4,635,323 - PFLU_RS20580 0.48 -4.1
4,635,323 - PFLU_RS20580 0.48 -3.3
4,635,323 - PFLU_RS20580 0.48 -2.1
4,635,323 - PFLU_RS20580 0.48 -3.8
4,635,323 - PFLU_RS20580 0.48 -2.4
4,635,470 + PFLU_RS20580 0.58 -1.5
4,635,551 + PFLU_RS20580 0.64 -2.1
4,635,551 + PFLU_RS20580 0.64 -2.1
4,635,551 + PFLU_RS20580 0.64 -2.7
4,635,551 + PFLU_RS20580 0.64 -1.7
4,635,551 + PFLU_RS20580 0.64 -1.5
4,635,551 + PFLU_RS20580 0.64 -3.0
4,635,551 + PFLU_RS20580 0.64 -2.0
4,635,551 + PFLU_RS20580 0.64 -2.7
4,635,551 + PFLU_RS20580 0.64 -2.1
4,635,551 + PFLU_RS20580 0.64 -1.9
4,635,551 + PFLU_RS20580 0.64 -1.3
4,635,551 + PFLU_RS20580 0.64 -3.2
4,635,551 + PFLU_RS20580 0.64 -1.8
4,635,551 + PFLU_RS20580 0.64 -2.3
4,635,551 + PFLU_RS20580 0.64 -2.3
4,635,551 + PFLU_RS20580 0.64 -2.7
4,635,551 + PFLU_RS20580 0.64 -2.6
4,635,552 - PFLU_RS20580 0.64 -4.0
4,635,552 - PFLU_RS20580 0.64 +0.3
4,635,552 - PFLU_RS20580 0.64 -0.9
4,635,552 - PFLU_RS20580 0.64 -2.3
4,635,552 - PFLU_RS20580 0.64 -3.6
4,635,552 - PFLU_RS20580 0.64 -2.6
4,635,552 - PFLU_RS20580 0.64 -0.9
4,635,552 - PFLU_RS20580 0.64 -3.0
4,635,552 - PFLU_RS20580 0.64 -3.5
4,635,552 - PFLU_RS20580 0.64 -2.0
4,635,552 - PFLU_RS20580 0.64 -2.5
4,635,552 - PFLU_RS20580 0.64 -2.7
4,635,552 - PFLU_RS20580 0.64 -2.3
4,635,552 - PFLU_RS20580 0.64 -3.6
4,635,552 - PFLU_RS20580 0.64 -3.4
4,635,552 - PFLU_RS20580 0.64 -2.3
4,635,552 - PFLU_RS20580 0.64 -0.3

Or see this region's nucleotide sequence