Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13875

Experiment: Glucose (C) and L-Glutamine (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and L-Glutamine (N); with TAPS; with chloride
3,124,619	+		PFLU_RS30295	0.21	+1.3
3,124,619	+		PFLU_RS30295	0.21	-0.2
3,124,620	-		PFLU_RS30295	0.21	-0.5
3,124,624	+		PFLU_RS30295	0.22	-0.3
3,124,624	+		PFLU_RS30295	0.22	+0.6
3,124,624	+		PFLU_RS30295	0.22	-0.1
3,124,624	+		PFLU_RS30295	0.22	-0.5
3,124,624	+		PFLU_RS30295	0.22	-1.5
3,124,624	+		PFLU_RS30295	0.22	-0.9
3,124,624	+		PFLU_RS30295	0.22	-0.2
3,124,624	+		PFLU_RS30295	0.22	+0.6
3,124,624	+		PFLU_RS30295	0.22	-1.2
3,124,624	+		PFLU_RS30295	0.22	-0.3
3,124,625	-		PFLU_RS30295	0.22	-1.0
3,124,625	-		PFLU_RS30295	0.22	-0.6
3,124,625	-		PFLU_RS30295	0.22	+0.3
3,124,625	-		PFLU_RS30295	0.22	-0.6
3,124,625	-		PFLU_RS30295	0.22	+0.3
3,124,625	-		PFLU_RS30295	0.22	+1.5
3,124,625	-		PFLU_RS30295	0.22	-0.9
3,124,625	-		PFLU_RS30295	0.22	+0.7
3,124,647	-		PFLU_RS30295	0.26	+1.3
3,124,647	-		PFLU_RS30295	0.26	+0.3
3,124,647	-		PFLU_RS30295	0.26	-0.7
3,124,714	+		PFLU_RS30295	0.37	-0.3
3,124,714	+		PFLU_RS30295	0.37	+1.2
3,124,714	+		PFLU_RS30295	0.37	+1.6
3,124,714	+		PFLU_RS30295	0.37	+0.4
3,124,714	+		PFLU_RS30295	0.37	-0.3
3,124,714	+		PFLU_RS30295	0.37	+0.9
3,124,714	+		PFLU_RS30295	0.37	+0.8
3,124,714	+		PFLU_RS30295	0.37	+1.3
3,124,715	-		PFLU_RS30295	0.37	-0.6
3,124,715	-		PFLU_RS30295	0.37	+0.9
3,124,715	-		PFLU_RS30295	0.37	-1.9
3,124,715	-		PFLU_RS30295	0.37	-0.3
3,124,715	-		PFLU_RS30295	0.37	+0.6
3,124,715	-		PFLU_RS30295	0.37	+1.3
3,124,777	+		PFLU_RS30295	0.47	+0.1
3,124,777	+		PFLU_RS30295	0.47	-0.7
3,124,777	+		PFLU_RS30295	0.47	+0.7
3,124,778	-		PFLU_RS30295	0.47	+2.3
3,124,899	+		PFLU_RS30295	0.68	+1.6
3,124,899	+		PFLU_RS30295	0.68	+0.3
3,124,899	+		PFLU_RS30295	0.68	-0.6
3,124,899	+		PFLU_RS30295	0.68	-0.5
3,124,899	+		PFLU_RS30295	0.68	-0.0
3,124,899	+		PFLU_RS30295	0.68	+0.5
3,124,899	+		PFLU_RS30295	0.68	-0.1
3,124,899	+		PFLU_RS30295	0.68	+0.6
3,124,900	-		PFLU_RS30295	0.68	+0.7
3,124,900	-		PFLU_RS30295	0.68	-0.0
3,124,900	-		PFLU_RS30295	0.68	-0.7
3,124,900	-		PFLU_RS30295	0.68	-0.4
3,124,900	-		PFLU_RS30295	0.68	+0.2
3,124,900	-		PFLU_RS30295	0.68	+0.7
3,124,900	-		PFLU_RS30295	0.68	-0.8
3,124,900	-		PFLU_RS30295	0.68	-0.9
3,124,900	-		PFLU_RS30295	0.68	-0.4
3,124,900	-		PFLU_RS30295	0.68	-2.2
3,124,918	-		PFLU_RS30295	0.71	+1.6
3,124,980	+		PFLU_RS30295	0.81	-0.8
3,124,982	+		PFLU_RS30295	0.81	+0.3
3,124,982	+		PFLU_RS30295	0.81	+0.3
3,124,982	+		PFLU_RS30295	0.81	-0.1
3,124,983	-		PFLU_RS30295	0.81	+1.2
3,124,983	-		PFLU_RS30295	0.81	-0.0
3,124,983	-		PFLU_RS30295	0.81	-1.9
3,125,019	+		PFLU_RS30295	0.88	+2.1
3,125,019	+		PFLU_RS30295	0.88	-0.5
3,125,019	+		PFLU_RS30295	0.88	+2.0
3,125,039	+				-0.2
3,125,040	-				-0.5
3,125,043	+				-2.2
3,125,076	+				-0.3
3,125,076	+				+0.3
3,125,077	-				-0.7
3,125,077	-				+0.3
3,125,099	+				+1.3
3,125,099	+				+0.1
3,125,099	+				+0.9
3,125,100	-				-0.7
3,125,100	-				-1.3
3,125,100	-				+0.1
3,125,100	-				-1.0
3,125,128	-				-1.3
3,125,152	+				-0.5
3,125,163	-				+0.7
3,125,163	-				-2.3
3,125,204	+		PFLU_RS13870	0.16	+0.2
3,125,205	-		PFLU_RS13870	0.16	-0.1
3,125,214	-		PFLU_RS13870	0.18	-0.5
3,125,214	-		PFLU_RS13870	0.18	-1.2
3,125,221	-		PFLU_RS13870	0.19	-1.8
3,125,268	-		PFLU_RS13870	0.29	+0.7
3,125,390	+		PFLU_RS13870	0.55	-1.3
3,125,417	+		PFLU_RS13870	0.60	-0.3
3,125,417	+		PFLU_RS13870	0.60	-0.2
3,125,417	+		PFLU_RS13870	0.60	+0.3
3,125,417	+		PFLU_RS13870	0.60	-0.0
3,125,417	+		PFLU_RS13870	0.60	+0.3
3,125,417	+		PFLU_RS13870	0.60	+1.3
3,125,417	+		PFLU_RS13870	0.60	+0.1
3,125,418	-		PFLU_RS13870	0.61	-2.0
3,125,418	-		PFLU_RS13870	0.61	-1.0
3,125,419	+		PFLU_RS13870	0.61	-1.0
3,125,420	-		PFLU_RS13870	0.61	-0.5
3,125,441	-		PFLU_RS13870	0.65	+0.7
3,125,441	-		PFLU_RS13870	0.65	-0.7
3,125,560	-				-0.4
3,125,574	+				+1.3
3,125,575	-				-0.6
3,125,575	-				-1.4
3,125,575	-				-0.4
3,125,575	-				-0.1
3,125,576	+				-1.0
3,125,577	-				+1.3
3,125,606	-				-0.9
3,125,625	+				+1.3
3,125,625	+				-1.0
3,125,653	+				-2.5
3,125,753	+		PFLU_RS13875	0.14	-1.9
3,125,753	+		PFLU_RS13875	0.14	-0.9
3,125,806	+		PFLU_RS13875	0.19	+0.2
3,125,815	+		PFLU_RS13875	0.19	+1.7
3,125,824	+		PFLU_RS13875	0.20	-0.3
3,125,824	+		PFLU_RS13875	0.20	-0.2
3,125,824	+		PFLU_RS13875	0.20	+0.7
3,125,824	+		PFLU_RS13875	0.20	-0.4
3,125,952	+		PFLU_RS13875	0.31	-1.3
3,125,958	+		PFLU_RS13875	0.32	-1.0
3,125,991	+		PFLU_RS13875	0.35	-1.7
3,126,059	+		PFLU_RS13875	0.41	+1.3
3,126,059	+		PFLU_RS13875	0.41	-0.3
3,126,169	+		PFLU_RS13875	0.50	+1.3
3,126,204	+		PFLU_RS13875	0.53	-1.3
3,126,230	+		PFLU_RS13875	0.56	-2.5
3,126,240	+		PFLU_RS13875	0.57	-0.7
3,126,240	+		PFLU_RS13875	0.57	-0.0
3,126,240	+		PFLU_RS13875	0.57	-0.8
3,126,261	+		PFLU_RS13875	0.58	-0.6
3,126,262	-		PFLU_RS13875	0.58	-2.0
3,126,378	-		PFLU_RS13875	0.69	-1.3
3,126,408	+		PFLU_RS13875	0.71	-0.4
3,126,413	-		PFLU_RS13875	0.72	-2.6
3,126,413	-		PFLU_RS13875	0.72	-1.3
3,126,417	-		PFLU_RS13875	0.72	-1.5
3,126,458	+		PFLU_RS13875	0.76	+0.9
3,126,465	-		PFLU_RS13875	0.76	-2.4
3,126,524	+		PFLU_RS13875	0.81	-0.3
3,126,524	+		PFLU_RS13875	0.81	-1.0
3,126,525	-		PFLU_RS13875	0.81	-0.7
3,126,525	-		PFLU_RS13875	0.81	-1.3
3,126,678	+				+1.3
3,126,678	+				+1.7
3,126,679	-				-2.8
3,126,746	-				-3.2
3,126,767	+				-0.7
3,126,767	+				+0.3
3,126,768	-				+1.3
3,126,785	+				+1.0
3,126,785	+				+0.2
3,126,786	-				-0.0
3,126,808	+				+0.1
3,126,808	+				+0.6
3,126,862	+				-0.0
3,126,862	+				+2.0
3,126,862	+				-0.0
3,126,862	+				+0.5
3,126,862	+				-0.3
3,126,862	+				-0.2
3,126,862	+				-0.3
3,126,862	+				+0.0
3,126,862	+				+0.5
3,126,862	+				+1.1
3,126,862	+				-1.7
3,126,862	+				-1.2
3,126,862	+				-0.0
3,126,862	+				-0.5
3,126,862	+				-0.1
3,126,863	-				+0.1
3,126,863	-				-1.2
3,126,863	-				+2.1
3,126,863	-				-0.8
3,126,863	-				+0.7
3,126,863	-				+1.0
3,126,863	-				-0.3
3,126,863	-				-0.2
3,126,863	-				+1.2
3,126,863	-				+0.2
3,126,863	-				-0.8
3,126,863	-				-0.5
3,126,863	-				-0.9
3,126,863	-				-2.3
3,126,863	-				+1.7
3,126,864	+				+2.3
3,126,864	+				-0.3
3,126,864	+				+0.4
3,126,864	+				-1.0
3,126,864	+				+1.2
3,126,864	+				-0.3
3,126,864	+				+0.6
3,126,864	+				-1.9
3,126,864	+				+0.7
3,126,864	+				+0.6
3,126,864	+				+1.9
3,126,864	+				-0.2
3,126,864	+				-0.4
3,126,864	+				+1.0
3,126,864	+				-0.3
3,126,864	+				-1.3
3,126,864	+				+0.2
3,126,864	+				+1.7
3,126,864	+				+0.1
3,126,864	+				+0.7
3,126,864	+				+0.1
3,126,864	+				-0.4
3,126,864	+				-2.6
3,126,865	-				-1.0
3,126,865	-				-1.5
3,126,865	-				+0.2
3,126,865	-				+1.8
3,126,865	-				+0.2
3,126,865	-				+2.9
3,126,865	-				+0.1
3,126,865	-				+0.3
3,126,865	-				+1.0
3,126,865	-				+1.7
3,126,865	-				+0.1
3,126,865	-				-1.7
3,126,865	-				+0.2
3,126,865	-				-0.7
3,126,865	-				-0.6
3,126,865	-				-0.7
3,126,865	-				+0.1
3,126,865	-				+1.0
3,126,865	-				+0.5
3,126,865	-				+1.3
3,126,865	-				+0.8
3,126,865	-				-0.6
3,126,865	-				+0.8
3,126,865	-				+0.1
3,126,880	-		PFLU_RS30785	0.16	-0.3
3,126,965	+		PFLU_RS30785	0.54	+0.3
3,126,965	+		PFLU_RS30785	0.54	+1.0
3,126,965	+		PFLU_RS30785	0.54	-0.5
3,126,965	+		PFLU_RS30785	0.54	+1.2
3,126,965	+		PFLU_RS30785	0.54	-2.4
3,126,965	+		PFLU_RS30785	0.54	+0.1
3,126,966	-		PFLU_RS30785	0.55	-2.4
3,126,966	-		PFLU_RS30785	0.55	-0.3
3,126,966	-		PFLU_RS30785	0.55	+1.0
3,127,027	+		PFLU_RS30785	0.83	-0.2
3,127,028	-		PFLU_RS30785	0.83	+1.3
3,127,028	-		PFLU_RS30785	0.83	+0.1
3,127,028	-		PFLU_RS30785	0.83	+1.9
3,127,028	-		PFLU_RS30785	0.83	+0.5
3,127,028	-		PFLU_RS30785	0.83	+0.2
3,127,028	-		PFLU_RS30785	0.83	+0.2
3,127,135	+		PFLU_RS13880	0.16	-0.3
3,127,135	+		PFLU_RS13880	0.16	+0.8
3,127,136	-		PFLU_RS13880	0.16	-0.4
3,127,136	-		PFLU_RS13880	0.16	+1.7
3,127,136	-		PFLU_RS13880	0.16	+1.8
3,127,136	-		PFLU_RS13880	0.16	-0.7
3,127,136	-		PFLU_RS13880	0.16	+0.5
3,127,136	-		PFLU_RS13880	0.16	+0.5
3,127,136	-		PFLU_RS13880	0.16	+0.3
3,127,136	-		PFLU_RS13880	0.16	+1.4
3,127,136	-		PFLU_RS13880	0.16	-0.0
3,127,136	-		PFLU_RS13880	0.16	+0.3
3,127,158	-		PFLU_RS13880	0.23	+1.1
3,127,163	+		PFLU_RS13880	0.25	+0.1
3,127,164	-		PFLU_RS13880	0.25	-0.6
3,127,192	+		PFLU_RS13880	0.34	+0.6
3,127,192	+		PFLU_RS13880	0.34	+0.4
3,127,192	+		PFLU_RS13880	0.34	+1.0
3,127,192	+		PFLU_RS13880	0.34	+3.2
3,127,192	+		PFLU_RS13880	0.34	+1.3
3,127,192	+		PFLU_RS13880	0.34	-0.3
3,127,192	+		PFLU_RS13880	0.34	+0.0
3,127,193	-		PFLU_RS13880	0.34	-0.4
3,127,193	-		PFLU_RS13880	0.34	+1.3
3,127,193	-		PFLU_RS13880	0.34	-0.2
3,127,193	-		PFLU_RS13880	0.34	+0.6
3,127,193	-		PFLU_RS13880	0.34	+2.6
3,127,197	-		PFLU_RS13880	0.36	+0.1
3,127,224	+		PFLU_RS13880	0.44	+1.9
3,127,225	-		PFLU_RS13880	0.45	-0.6
3,127,225	-		PFLU_RS13880	0.45	+2.2
3,127,225	-		PFLU_RS13880	0.45	+0.9
3,127,225	-		PFLU_RS13880	0.45	-0.6
3,127,239	+		PFLU_RS13880	0.49	+1.3
3,127,258	+		PFLU_RS13880	0.55	+1.3
3,127,259	-		PFLU_RS13880	0.56	+0.5
3,127,259	-		PFLU_RS13880	0.56	+0.7
3,127,259	-		PFLU_RS13880	0.56	+0.3
3,127,259	-		PFLU_RS13880	0.56	-0.3
3,127,259	-		PFLU_RS13880	0.56	+0.1
3,127,260	+		PFLU_RS13880	0.56	+2.3
3,127,260	+		PFLU_RS13880	0.56	-2.3
3,127,260	+		PFLU_RS13880	0.56	+0.3
3,127,260	+		PFLU_RS13880	0.56	+0.9
3,127,260	+		PFLU_RS13880	0.56	+0.7
3,127,261	-		PFLU_RS13880	0.56	+1.1
3,127,261	-		PFLU_RS13880	0.56	-0.9
3,127,261	-		PFLU_RS13880	0.56	+0.0
3,127,261	-		PFLU_RS13880	0.56	+0.1
3,127,261	-		PFLU_RS13880	0.56	-0.9
3,127,261	-		PFLU_RS13880	0.56	+1.1
3,127,261	-		PFLU_RS13880	0.56	-0.4
3,127,261	-		PFLU_RS13880	0.56	-1.7
3,127,261	-		PFLU_RS13880	0.56	+0.6
3,127,353	+		PFLU_RS13880	0.86	-0.0
3,127,353	+		PFLU_RS13880	0.86	+0.3
3,127,353	+		PFLU_RS13880	0.86	+2.1
3,127,353	+		PFLU_RS13880	0.86	-1.9
3,127,353	+		PFLU_RS13880	0.86	+2.9
3,127,353	+		PFLU_RS13880	0.86	+0.7
3,127,354	-		PFLU_RS13880	0.86	-1.3
3,127,354	-		PFLU_RS13880	0.86	+0.4
3,127,385	-				-0.7
3,127,414	-				+0.5
3,127,448	+				+0.6
3,127,448	+				-0.7
3,127,448	+				+0.2
3,127,448	+				+0.8
3,127,448	+				+0.9
3,127,448	+				+0.7
3,127,448	+				+0.1
3,127,448	+				+0.6
3,127,449	-				-0.1
3,127,449	-				+0.9
3,127,449	-				-0.9
3,127,449	-				+1.0
3,127,449	-				+1.0
3,127,449	-				+0.7
3,127,449	-				+0.3
3,127,449	-				+0.6
3,127,472	-				+0.0
3,127,546	+		PFLU_RS13885	0.33	-0.7
3,127,546	+		PFLU_RS13885	0.33	-1.1
3,127,553	+		PFLU_RS13885	0.36	-0.0
3,127,554	-		PFLU_RS13885	0.37	+0.1
3,127,576	-		PFLU_RS13885	0.46	+0.2
3,127,697	+				+2.3
3,127,697	+				+1.3
3,127,697	+				-0.0
3,127,697	+				-0.7
3,127,697	+				+0.1
3,127,697	+				-1.7
3,127,697	+				+0.8
3,127,697	+				-2.0
3,127,697	+				+0.9
3,127,698	-				+0.1
3,127,698	-				+1.6
3,127,698	-				-0.6
3,127,698	-				+0.3
3,127,698	-				+2.3
3,127,698	-				-1.0