Experiment: PEG (Day 3) - Cage3;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3919 and BT3920 are separated by 132 nucleotides BT3920 and BT3921 are separated by 42 nucleotides BT3921 and BT3922 are separated by 25 nucleotides BT3922 and BT3923 are separated by 7 nucleotides
BT3919: BT3919 - putative biopolymer transport protein (NCBI ptt file), at 5,093,695 to 5,094,414
BT3919
BT3920: BT3920 - conserved hypothetical protein (NCBI ptt file), at 5,094,547 to 5,094,876
BT3920
BT3921: BT3921 - hypothetical protein (NCBI ptt file), at 5,094,919 to 5,095,797
BT3921
BT3922: BT3922 - putative ThiJ family intracellular protease/amidase (NCBI ptt file), at 5,095,823 to 5,096,374
BT3922
BT3923: BT3923 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (NCBI ptt file), at 5,096,382 to 5,097,041
BT3923
Position (kb) 5094
5095
5096 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5093.944 kb on + strand, within BT3919 at 5093.946 kb on + strand, within BT3919 at 5093.952 kb on + strand, within BT3919 at 5094.231 kb on + strand, within BT3919 at 5094.322 kb on + strand, within BT3919 at 5094.381 kb on + strand at 5094.757 kb on + strand, within BT3920 at 5094.757 kb on + strand, within BT3920 at 5094.874 kb on + strand at 5094.883 kb on + strand at 5095.556 kb on + strand, within BT3921 at 5095.585 kb on + strand, within BT3921 at 5095.587 kb on + strand, within BT3921 at 5095.620 kb on + strand, within BT3921 at 5095.620 kb on + strand, within BT3921 at 5095.777 kb on + strand at 5095.777 kb on + strand at 5095.798 kb on + strand at 5095.983 kb on + strand, within BT3922 at 5096.053 kb on + strand, within BT3922 at 5096.257 kb on + strand, within BT3922 at 5096.257 kb on + strand, within BT3922 at 5096.257 kb on + strand, within BT3922 at 5096.287 kb on + strand, within BT3922 at 5096.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 3) - Cage3;Mouse2 remove 5,093,944 + BT3919 0.35 +0.1 5,093,946 + BT3919 0.35 +0.9 5,093,952 + BT3919 0.36 -1.2 5,094,231 + BT3919 0.74 -1.3 5,094,322 + BT3919 0.87 -1.1 5,094,381 + +0.1 5,094,757 + BT3920 0.64 -2.1 5,094,757 + BT3920 0.64 -3.1 5,094,874 + -0.6 5,094,883 + +0.5 5,095,556 + BT3921 0.72 -0.5 5,095,585 + BT3921 0.76 -1.0 5,095,587 + BT3921 0.76 -0.1 5,095,620 + BT3921 0.80 -0.9 5,095,620 + BT3921 0.80 -0.1 5,095,777 + -2.7 5,095,777 + +0.2 5,095,798 + +0.1 5,095,983 + BT3922 0.29 -0.8 5,096,053 + BT3922 0.42 -4.3 5,096,257 + BT3922 0.79 -1.9 5,096,257 + BT3922 0.79 -2.3 5,096,257 + BT3922 0.79 -2.4 5,096,287 + BT3922 0.84 -1.9 5,096,349 + -0.6
Or see this region's nucleotide sequence