Experiment: PEG (Day 3) - Cage3;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0278 and BT0279 are separated by 146 nucleotides BT0279 and BT0280 are separated by 113 nucleotides
BT0278: BT0278 - conserved hypothetical protein (NCBI ptt file), at 321,756 to 323,528
BT0278
BT0279: BT0279 - hypothetical protein (NCBI ptt file), at 323,675 to 324,427
BT0279
BT0280: BT0280 - transposase for insertion sequence element ISRM3 (NCBI ptt file), at 324,541 to 325,758
BT0280
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.775 kb on + strand, within BT0278 at 322.775 kb on + strand, within BT0278 at 322.791 kb on + strand, within BT0278 at 322.791 kb on + strand, within BT0278 at 322.791 kb on + strand, within BT0278 at 322.845 kb on - strand, within BT0278 at 322.955 kb on - strand, within BT0278 at 322.997 kb on - strand, within BT0278 at 322.997 kb on - strand, within BT0278 at 322.997 kb on - strand, within BT0278 at 323.004 kb on - strand, within BT0278 at 323.004 kb on - strand, within BT0278 at 323.025 kb on - strand, within BT0278 at 323.097 kb on + strand, within BT0278 at 323.098 kb on - strand, within BT0278 at 323.098 kb on - strand, within BT0278 at 323.100 kb on - strand, within BT0278 at 323.117 kb on - strand, within BT0278 at 323.190 kb on - strand, within BT0278 at 323.285 kb on + strand, within BT0278 at 323.294 kb on + strand, within BT0278 at 323.466 kb on + strand at 323.467 kb on - strand at 323.621 kb on - strand at 323.687 kb on - strand at 323.721 kb on + strand at 323.782 kb on + strand, within BT0279 at 323.812 kb on + strand, within BT0279 at 323.983 kb on - strand, within BT0279 at 324.072 kb on - strand, within BT0279 at 324.086 kb on + strand, within BT0279 at 324.087 kb on - strand, within BT0279 at 324.140 kb on + strand, within BT0279 at 324.181 kb on - strand, within BT0279 at 324.188 kb on - strand, within BT0279 at 324.192 kb on + strand, within BT0279 at 324.320 kb on - strand, within BT0279 at 324.323 kb on + strand, within BT0279 at 324.359 kb on + strand at 324.360 kb on - strand at 324.362 kb on + strand at 324.430 kb on - strand at 324.439 kb on + strand at 324.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 3) - Cage3;Mouse2 remove 322,775 + BT0278 0.57 -1.1 322,775 + BT0278 0.57 -0.8 322,791 + BT0278 0.58 -3.4 322,791 + BT0278 0.58 +0.5 322,791 + BT0278 0.58 -0.1 322,845 - BT0278 0.61 +0.5 322,955 - BT0278 0.68 -2.1 322,997 - BT0278 0.70 +0.9 322,997 - BT0278 0.70 -0.5 322,997 - BT0278 0.70 -1.3 323,004 - BT0278 0.70 -2.7 323,004 - BT0278 0.70 -2.1 323,025 - BT0278 0.72 -2.5 323,097 + BT0278 0.76 -1.7 323,098 - BT0278 0.76 -1.1 323,098 - BT0278 0.76 +0.6 323,100 - BT0278 0.76 -0.1 323,117 - BT0278 0.77 -1.1 323,190 - BT0278 0.81 -0.8 323,285 + BT0278 0.86 -1.3 323,294 + BT0278 0.87 -1.8 323,466 + -3.2 323,467 - -0.8 323,621 - -0.8 323,687 - -0.1 323,721 + +0.3 323,782 + BT0279 0.14 +2.4 323,812 + BT0279 0.18 +0.2 323,983 - BT0279 0.41 +3.2 324,072 - BT0279 0.53 -1.8 324,086 + BT0279 0.55 -2.2 324,087 - BT0279 0.55 -1.8 324,140 + BT0279 0.62 +1.8 324,181 - BT0279 0.67 -0.8 324,188 - BT0279 0.68 +2.7 324,192 + BT0279 0.69 +0.8 324,320 - BT0279 0.86 -1.5 324,323 + BT0279 0.86 -1.1 324,359 + -2.4 324,360 - -0.9 324,362 + -1.1 324,430 - -0.1 324,439 + -1.6 324,530 - -2.0
Or see this region's nucleotide sequence