Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2634

Experiment: PEG (Day 2) - Cage4;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PEG (Day 2) - Cage4;Mouse1
3,288,133	+				-0.1
3,288,133	+				-0.3
3,288,134	-				-0.4
3,288,134	-				-0.9
3,288,134	-				-1.3
3,288,163	+				-0.4
3,288,163	+				+0.7
3,288,169	+				-1.8
3,288,187	-				-0.3
3,288,191	+				-1.7
3,288,296	+				-0.1
3,288,375	-		BT2633	0.29	-4.8
3,288,376	+		BT2633	0.30	-3.1
3,288,377	-		BT2633	0.30	-1.3
3,288,476	-		BT2633	0.67	-1.3
3,288,510	-		BT2633	0.80	+0.1
3,288,518	+		BT2633	0.83	-1.1
3,288,644	+				-2.1
3,288,664	-				-0.7
3,288,733	+				-1.3
3,288,733	+				-0.4
3,288,735	+				-1.8
3,288,736	-				-1.3
3,288,736	-				+0.3
3,288,736	-				-1.3
3,288,739	-				-0.7
3,288,740	+				-0.1
3,288,745	+				-0.1
3,288,785	+				-1.1
3,288,823	-				-0.6
3,288,832	-				-1.1
3,288,841	+				-1.9
3,288,869	+				+0.9
3,288,869	+				-0.7
3,288,870	-				-0.3
3,288,880	+				+0.4
3,288,881	-				-1.9
3,288,941	+				-0.5
3,289,002	+				-0.5
3,289,002	+				-1.5
3,289,002	+				-0.4
3,289,002	+				-0.7
3,289,003	-				-2.0
3,289,016	+				-4.2
3,289,017	-				+0.3
3,289,020	-				-0.1
3,289,020	-				+1.1
3,289,020	-				-1.4
3,289,039	-				+0.6
3,289,052	+				-1.7
3,289,054	+				-2.2
3,289,054	+				-0.9
3,289,054	+				-1.3
3,289,054	+				+0.0
3,289,055	-				-0.1
3,289,055	-				-1.6
3,289,055	-				+0.9
3,289,056	+				-0.4
3,289,058	+				+0.2
3,289,072	-				-1.1
3,289,126	+		BT2634	0.15	+0.3
3,289,129	-		BT2634	0.16	-1.4
3,289,129	-		BT2634	0.16	-0.7
3,289,152	-		BT2634	0.18	-1.4
3,289,238	+		BT2634	0.26	-1.4
3,289,317	+		BT2634	0.34	-1.9
3,289,318	-		BT2634	0.35	-2.1
3,289,318	-		BT2634	0.35	-1.1
3,289,320	-		BT2634	0.35	-1.3
3,289,327	-		BT2634	0.35	-1.7
3,289,334	+		BT2634	0.36	-2.6
3,289,335	-		BT2634	0.36	-1.2
3,289,361	+		BT2634	0.39	-0.2
3,289,361	+		BT2634	0.39	+0.0
3,289,375	+		BT2634	0.40	-1.2
3,289,412	+		BT2634	0.44	-1.6
3,289,412	+		BT2634	0.44	-0.9
3,289,413	-		BT2634	0.44	-2.4
3,289,418	+		BT2634	0.45	-2.4
3,289,418	+		BT2634	0.45	-1.6
3,289,418	+		BT2634	0.45	-0.9
3,289,419	-		BT2634	0.45	+1.0
3,289,419	-		BT2634	0.45	-0.4
3,289,423	-		BT2634	0.45	-1.8
3,289,464	-		BT2634	0.49	-3.3
3,289,465	+		BT2634	0.49	-1.6
3,289,477	-		BT2634	0.51	-1.1
3,289,487	-		BT2634	0.52	-1.9
3,289,504	-		BT2634	0.53	+1.9
3,289,575	+		BT2634	0.60	-3.1
3,289,620	-		BT2634	0.65	-1.9
3,289,661	+		BT2634	0.69	-2.6
3,289,661	+		BT2634	0.69	-0.1
3,289,673	-		BT2634	0.70	-0.1
3,289,725	-		BT2634	0.76	-0.9
3,289,743	+		BT2634	0.77	-1.8
3,289,743	+		BT2634	0.77	-0.1
3,289,744	-		BT2634	0.77	-2.2
3,289,745	+		BT2634	0.78	-1.7
3,289,746	-		BT2634	0.78	-2.9
3,289,746	-		BT2634	0.78	-2.1
3,289,787	+		BT2634	0.82	-2.7
3,289,800	-		BT2634	0.83	+0.4
3,289,840	+		BT2634	0.87	-0.1
3,289,841	-		BT2634	0.87	+0.3
3,289,841	-		BT2634	0.87	-1.1
3,289,847	+		BT2634	0.88	-1.1
3,289,849	+		BT2634	0.88	-0.7
3,289,849	+		BT2634	0.88	-1.5
3,289,849	+		BT2634	0.88	-2.1
3,289,849	+		BT2634	0.88	-0.1
3,289,849	+		BT2634	0.88	-2.3
3,289,850	-		BT2634	0.88	-0.3
3,289,874	+				+0.3
3,289,874	+				-2.0
3,289,903	-				-0.4
3,289,907	-				-2.7
3,289,907	-				-0.3
3,289,914	+				-0.9
3,289,918	+				-0.8
3,289,919	-				-2.2
3,289,934	-				-2.2
3,289,938	+				-0.1
3,289,968	-				-0.4
3,290,026	+		BT2635	0.23	-1.5
3,290,034	+		BT2635	0.26	-0.5
3,290,034	+		BT2635	0.26	-0.9
3,290,034	+		BT2635	0.26	-0.4
3,290,035	-		BT2635	0.26	-0.6
3,290,044	+		BT2635	0.30	+0.2
3,290,048	+		BT2635	0.31	-2.0
3,290,067	+		BT2635	0.38	-2.4
3,290,067	+		BT2635	0.38	-2.0
3,290,115	+		BT2635	0.56	+0.1
3,290,115	+		BT2635	0.56	-0.9
3,290,190	+		BT2635	0.84	-0.2
3,290,191	-		BT2635	0.84	-1.9
3,290,195	-		BT2635	0.86	-0.0
3,290,195	-		BT2635	0.86	+0.5
3,290,216	+				-4.4
3,290,217	-				-1.6
3,290,312	+				-2.5
3,290,313	-				+1.3
3,290,343	-				-0.1
3,290,369	+				-0.2
3,290,383	+		BT2636	0.12	-1.1
3,290,385	+		BT2636	0.13	-2.3
3,290,409	-		BT2636	0.20	-1.0
3,290,410	+		BT2636	0.20	-2.5
3,290,416	+		BT2636	0.22	-0.5
3,290,432	+		BT2636	0.26	-3.5
3,290,447	+		BT2636	0.30	+0.7
3,290,447	+		BT2636	0.30	-2.2
3,290,470	+		BT2636	0.37	-2.8
3,290,485	-		BT2636	0.41	-0.1
3,290,498	+		BT2636	0.45	-0.4
3,290,499	-		BT2636	0.45	-0.1
3,290,509	+		BT2636	0.48	-2.6
3,290,530	+		BT2636	0.54	-1.5
3,290,544	+		BT2636	0.57	-0.8
3,290,545	-		BT2636	0.58	-1.3
3,290,589	+		BT2636	0.70	-2.5
3,290,591	+		BT2636	0.71	-1.1
3,290,591	+		BT2636	0.71	+0.3
3,290,593	+		BT2636	0.71	-2.0
3,290,593	+		BT2636	0.71	+1.3
3,290,593	+		BT2636	0.71	-2.3
3,290,594	-		BT2636	0.71	-1.1
3,290,595	+		BT2636	0.72	-0.7
3,290,595	+		BT2636	0.72	-0.8
3,290,595	+		BT2636	0.72	-0.1
3,290,627	-		BT2636	0.81	-1.3
3,290,647	-		BT2636	0.86	-1.6
3,290,666	+				+0.3
3,290,681	+				-1.9
3,290,700	+				-1.7
3,290,701	-				-1.4
3,290,701	-				-0.9
3,290,702	+				+0.9
3,290,702	+				-4.2
3,290,702	+				-0.8
3,290,703	-				-3.2
3,290,712	+				-0.8
3,290,713	-				-0.6
3,290,713	-				-3.7
3,290,715	+				+0.9
3,290,749	+		BT2637	0.19	-2.9
3,290,749	+		BT2637	0.19	-0.4
3,290,750	-		BT2637	0.19	-1.8
3,290,780	-		BT2637	0.34	-1.0
3,290,846	-		BT2637	0.67	+0.9
3,290,846	-		BT2637	0.67	-3.0
3,290,870	-		BT2637	0.79	-1.4
3,290,884	-		BT2637	0.86	-1.1
3,290,892	-				+1.1
3,290,892	-				-2.6
3,290,892	-				+0.7
3,290,911	+				-1.4
3,290,915	-				-0.1
3,290,917	-				-2.2
3,290,955	+				-1.8