Experiment: PEG (Day 2) - Cage4;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0415 and BT0416 are separated by 11 nucleotides BT0416 and BT0417 are separated by 18 nucleotides
BT0415: BT0415 - sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (NCBI ptt file), at 501,092 to 502,549
BT0415
BT0416: BT0416 - conserved hypothetical protein (NCBI ptt file), at 502,561 to 503,667
BT0416
BT0417: BT0417 - hypothetical protein (NCBI ptt file), at 503,686 to 504,654
BT0417
Position (kb) 502
503
504 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 501.618 kb on + strand, within BT0415 at 501.710 kb on - strand, within BT0415 at 501.818 kb on + strand, within BT0415 at 501.892 kb on + strand, within BT0415 at 501.892 kb on + strand, within BT0415 at 502.596 kb on + strand at 502.664 kb on - strand at 502.813 kb on - strand, within BT0416 at 502.813 kb on - strand, within BT0416 at 502.924 kb on - strand, within BT0416 at 502.962 kb on + strand, within BT0416 at 503.023 kb on + strand, within BT0416 at 503.032 kb on + strand, within BT0416 at 503.034 kb on + strand, within BT0416 at 503.068 kb on + strand, within BT0416 at 503.314 kb on - strand, within BT0416 at 503.397 kb on + strand, within BT0416 at 503.397 kb on + strand, within BT0416 at 503.402 kb on - strand, within BT0416 at 503.494 kb on - strand, within BT0416 at 503.500 kb on - strand, within BT0416 at 503.583 kb on + strand at 503.583 kb on + strand at 503.767 kb on - strand at 504.050 kb on + strand, within BT0417 at 504.266 kb on + strand, within BT0417 at 504.367 kb on + strand, within BT0417 at 504.371 kb on - strand, within BT0417 at 504.430 kb on - strand, within BT0417 at 504.565 kb on + strand at 504.652 kb on + strand at 504.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 2) - Cage4;Mouse1 remove 501,618 + BT0415 0.36 -2.3 501,710 - BT0415 0.42 -6.4 501,818 + BT0415 0.50 -1.7 501,892 + BT0415 0.55 -0.6 501,892 + BT0415 0.55 -0.9 502,596 + -2.0 502,664 - -0.6 502,813 - BT0416 0.23 -2.3 502,813 - BT0416 0.23 -3.8 502,924 - BT0416 0.33 -4.1 502,962 + BT0416 0.36 -1.1 503,023 + BT0416 0.42 -0.3 503,032 + BT0416 0.43 +0.4 503,034 + BT0416 0.43 -0.5 503,068 + BT0416 0.46 -0.6 503,314 - BT0416 0.68 -3.0 503,397 + BT0416 0.76 +0.1 503,397 + BT0416 0.76 -2.4 503,402 - BT0416 0.76 -4.6 503,494 - BT0416 0.84 -0.3 503,500 - BT0416 0.85 -1.3 503,583 + -0.6 503,583 + -0.6 503,767 - -1.4 504,050 + BT0417 0.38 -3.0 504,266 + BT0417 0.60 -0.3 504,367 + BT0417 0.70 -0.9 504,371 - BT0417 0.71 -1.9 504,430 - BT0417 0.77 -2.4 504,565 + -2.9 504,652 + -2.2 504,652 + -0.6
Or see this region's nucleotide sequence