Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3986

Experiment: PEG (Day 1) - Cage3;Mouse1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3985 and BT3986 are separated by 8 nucleotidesBT3986 and BT3987 are separated by 33 nucleotides BT3985: BT3985 - hypothetical protein (NCBI ptt file), at 5,190,666 to 5,191,742 BT3985 BT3986: BT3986 - putative patatin-like protein (NCBI ptt file), at 5,191,751 to 5,192,905 BT3986 BT3987: BT3987 - endo-beta-N-acetylglucosaminidase F1 precursor (NCBI ptt file), at 5,192,939 to 5,194,369 BT3987 Position (kb) 5191 5192 5193Strain fitness (log2 ratio) -2 -1 0 1 2at 5190.807 kb on + strand, within BT3985at 5190.807 kb on + strand, within BT3985at 5190.808 kb on - strand, within BT3985at 5190.839 kb on + strand, within BT3985at 5190.839 kb on + strand, within BT3985at 5190.840 kb on - strand, within BT3985at 5190.840 kb on - strand, within BT3985at 5190.840 kb on - strand, within BT3985at 5190.884 kb on + strand, within BT3985at 5190.885 kb on - strand, within BT3985at 5191.032 kb on - strand, within BT3985at 5191.032 kb on - strand, within BT3985at 5191.113 kb on + strand, within BT3985at 5191.234 kb on - strand, within BT3985at 5191.331 kb on - strand, within BT3985at 5191.447 kb on + strand, within BT3985at 5191.448 kb on - strand, within BT3985at 5191.541 kb on + strand, within BT3985at 5191.588 kb on + strand, within BT3985at 5191.589 kb on - strand, within BT3985at 5191.634 kb on + strand, within BT3985at 5191.638 kb on + strandat 5191.658 kb on + strandat 5191.662 kb on - strandat 5191.691 kb on + strandat 5191.695 kb on + strandat 5191.696 kb on - strandat 5191.722 kb on - strandat 5191.725 kb on - strandat 5191.737 kb on - strandat 5191.740 kb on + strandat 5191.761 kb on - strandat 5191.762 kb on + strandat 5191.766 kb on + strandat 5191.814 kb on - strandat 5191.844 kb on + strandat 5191.844 kb on + strandat 5191.844 kb on + strandat 5191.852 kb on + strandat 5191.859 kb on + strandat 5191.859 kb on + strandat 5191.859 kb on + strandat 5191.860 kb on - strandat 5191.906 kb on + strand, within BT3986at 5191.908 kb on + strand, within BT3986at 5191.934 kb on + strand, within BT3986at 5191.940 kb on - strand, within BT3986at 5191.940 kb on - strand, within BT3986at 5192.006 kb on + strand, within BT3986at 5192.006 kb on + strand, within BT3986at 5192.095 kb on + strand, within BT3986at 5192.096 kb on - strand, within BT3986at 5192.163 kb on + strand, within BT3986at 5192.164 kb on - strand, within BT3986at 5192.203 kb on - strand, within BT3986at 5192.226 kb on - strand, within BT3986at 5192.233 kb on - strand, within BT3986at 5192.251 kb on + strand, within BT3986at 5192.255 kb on - strand, within BT3986at 5192.255 kb on - strand, within BT3986at 5192.315 kb on - strand, within BT3986at 5192.463 kb on + strand, within BT3986at 5192.464 kb on - strand, within BT3986at 5192.512 kb on - strand, within BT3986at 5192.552 kb on - strand, within BT3986at 5192.552 kb on - strand, within BT3986at 5192.578 kb on + strand, within BT3986at 5192.597 kb on + strand, within BT3986at 5192.600 kb on - strand, within BT3986at 5192.620 kb on + strand, within BT3986at 5192.621 kb on - strand, within BT3986at 5192.645 kb on + strand, within BT3986at 5192.647 kb on + strand, within BT3986at 5192.758 kb on - strand, within BT3986at 5192.787 kb on - strand, within BT3986at 5192.842 kb on + strandat 5192.849 kb on - strandat 5192.849 kb on - strandat 5192.870 kb on - strandat 5192.894 kb on - strandat 5192.924 kb on - strandat 5192.945 kb on - strandat 5192.945 kb on - strandat 5192.945 kb on - strandat 5192.951 kb on + strandat 5192.954 kb on - strandat 5193.040 kb on + strandat 5193.069 kb on - strandat 5193.077 kb on - strandat 5193.143 kb on + strand, within BT3987at 5193.149 kb on - strand, within BT3987at 5193.149 kb on - strand, within BT3987at 5193.182 kb on - strand, within BT3987at 5193.190 kb on + strand, within BT3987at 5193.191 kb on - strand, within BT3987at 5193.233 kb on + strand, within BT3987at 5193.236 kb on - strand, within BT3987at 5193.247 kb on + strand, within BT3987at 5193.248 kb on - strand, within BT3987at 5193.307 kb on + strand, within BT3987at 5193.307 kb on + strand, within BT3987at 5193.307 kb on + strand, within BT3987at 5193.322 kb on + strand, within BT3987at 5193.350 kb on - strand, within BT3987at 5193.350 kb on - strand, within BT3987at 5193.386 kb on + strand, within BT3987at 5193.386 kb on + strand, within BT3987at 5193.387 kb on - strand, within BT3987at 5193.387 kb on - strand, within BT3987at 5193.392 kb on - strand, within BT3987at 5193.392 kb on - strand, within BT3987at 5193.403 kb on + strand, within BT3987at 5193.403 kb on + strand, within BT3987at 5193.418 kb on + strandat 5193.425 kb on - strand, within BT3987at 5193.425 kb on - strand, within BT3987at 5193.430 kb on + strand, within BT3987at 5193.457 kb on + strand, within BT3987at 5193.457 kb on + strand, within BT3987at 5193.458 kb on - strand, within BT3987at 5193.461 kb on + strand, within BT3987at 5193.476 kb on - strand, within BT3987at 5193.497 kb on + strand, within BT3987at 5193.499 kb on + strand, within BT3987at 5193.513 kb on + strand, within BT3987at 5193.524 kb on + strand, within BT3987at 5193.550 kb on - strand, within BT3987at 5193.562 kb on + strand, within BT3987at 5193.579 kb on + strand, within BT3987at 5193.613 kb on - strand, within BT3987at 5193.635 kb on + strand, within BT3987at 5193.671 kb on - strand, within BT3987at 5193.686 kb on + strand, within BT3987at 5193.687 kb on - strand, within BT3987at 5193.836 kb on + strand, within BT3987at 5193.841 kb on + strand, within BT3987at 5193.842 kb on - strand, within BT3987at 5193.851 kb on + strand, within BT3987at 5193.864 kb on + strand, within BT3987

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Per-strain Table

Position Strand Gene LocusTag Fraction PEG (Day 1) - Cage3;Mouse1
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5,190,807 + BT3985 0.13 +0.8
5,190,807 + BT3985 0.13 -1.6
5,190,808 - BT3985 0.13 -1.5
5,190,839 + BT3985 0.16 +0.0
5,190,839 + BT3985 0.16 -0.5
5,190,840 - BT3985 0.16 -0.9
5,190,840 - BT3985 0.16 -1.3
5,190,840 - BT3985 0.16 -1.6
5,190,884 + BT3985 0.20 -0.8
5,190,885 - BT3985 0.20 -0.6
5,191,032 - BT3985 0.34 -1.5
5,191,032 - BT3985 0.34 -1.3
5,191,113 + BT3985 0.42 -1.1
5,191,234 - BT3985 0.53 +0.5
5,191,331 - BT3985 0.62 -0.2
5,191,447 + BT3985 0.73 -0.8
5,191,448 - BT3985 0.73 -2.0
5,191,541 + BT3985 0.81 -1.0
5,191,588 + BT3985 0.86 -1.2
5,191,589 - BT3985 0.86 -0.8
5,191,634 + BT3985 0.90 -2.0
5,191,638 + -2.7
5,191,658 + -0.3
5,191,662 - -2.0
5,191,691 + +0.1
5,191,695 + +1.0
5,191,696 - -2.0
5,191,722 - -0.4
5,191,725 - -0.0
5,191,737 - -0.8
5,191,740 + -1.8
5,191,761 - -0.3
5,191,762 + +0.2
5,191,766 + +0.8
5,191,814 - -1.4
5,191,844 + -1.0
5,191,844 + -2.4
5,191,844 + -1.5
5,191,852 + -1.8
5,191,859 + -0.0
5,191,859 + -2.0
5,191,859 + -0.3
5,191,860 - -0.2
5,191,906 + BT3986 0.13 +0.1
5,191,908 + BT3986 0.14 +0.1
5,191,934 + BT3986 0.16 -0.7
5,191,940 - BT3986 0.16 -0.8
5,191,940 - BT3986 0.16 -1.0
5,192,006 + BT3986 0.22 +0.3
5,192,006 + BT3986 0.22 +1.0
5,192,095 + BT3986 0.30 +0.5
5,192,096 - BT3986 0.30 -0.8
5,192,163 + BT3986 0.36 +0.6
5,192,164 - BT3986 0.36 +0.5
5,192,203 - BT3986 0.39 -1.7
5,192,226 - BT3986 0.41 -1.5
5,192,233 - BT3986 0.42 -0.8
5,192,251 + BT3986 0.43 +0.2
5,192,255 - BT3986 0.44 +1.5
5,192,255 - BT3986 0.44 +1.0
5,192,315 - BT3986 0.49 +0.6
5,192,463 + BT3986 0.62 -1.1
5,192,464 - BT3986 0.62 +0.7
5,192,512 - BT3986 0.66 +0.2
5,192,552 - BT3986 0.69 +0.5
5,192,552 - BT3986 0.69 -0.5
5,192,578 + BT3986 0.72 -0.5
5,192,597 + BT3986 0.73 +1.1
5,192,600 - BT3986 0.74 -0.6
5,192,620 + BT3986 0.75 -1.0
5,192,621 - BT3986 0.75 -0.6
5,192,645 + BT3986 0.77 -2.2
5,192,647 + BT3986 0.78 +0.3
5,192,758 - BT3986 0.87 -0.9
5,192,787 - BT3986 0.90 +0.5
5,192,842 + -2.5
5,192,849 - -0.8
5,192,849 - -1.3
5,192,870 - -2.2
5,192,894 - +1.5
5,192,924 - +1.5
5,192,945 - +0.5
5,192,945 - +0.5
5,192,945 - -0.8
5,192,951 + -0.6
5,192,954 - +1.0
5,193,040 + -1.7
5,193,069 - -0.3
5,193,077 - +1.0
5,193,143 + BT3987 0.14 -1.8
5,193,149 - BT3987 0.15 -0.1
5,193,149 - BT3987 0.15 +0.2
5,193,182 - BT3987 0.17 -0.0
5,193,190 + BT3987 0.18 -1.9
5,193,191 - BT3987 0.18 -0.6
5,193,233 + BT3987 0.21 -1.0
5,193,236 - BT3987 0.21 -2.5
5,193,247 + BT3987 0.22 -2.0
5,193,248 - BT3987 0.22 +0.3
5,193,307 + BT3987 0.26 +1.0
5,193,307 + BT3987 0.26 +1.0
5,193,307 + BT3987 0.26 -1.6
5,193,322 + BT3987 0.27 -0.0
5,193,350 - BT3987 0.29 +0.4
5,193,350 - BT3987 0.29 -0.4
5,193,386 + BT3987 0.31 +1.5
5,193,386 + BT3987 0.31 +0.5
5,193,387 - BT3987 0.31 +0.5
5,193,387 - BT3987 0.31 -1.8
5,193,392 - BT3987 0.32 -1.0
5,193,392 - BT3987 0.32 -1.0
5,193,403 + BT3987 0.32 -0.9
5,193,403 + BT3987 0.32 -0.8
5,193,418 + +1.5
5,193,425 - BT3987 0.34 -0.8
5,193,425 - BT3987 0.34 -0.0
5,193,430 + BT3987 0.34 -1.4
5,193,457 + BT3987 0.36 -1.5
5,193,457 + BT3987 0.36 -1.3
5,193,458 - BT3987 0.36 -1.6
5,193,461 + BT3987 0.36 +2.1
5,193,476 - BT3987 0.38 +0.7
5,193,497 + BT3987 0.39 -0.0
5,193,499 + BT3987 0.39 -0.8
5,193,513 + BT3987 0.40 +1.5
5,193,524 + BT3987 0.41 +0.2
5,193,550 - BT3987 0.43 +1.5
5,193,562 + BT3987 0.44 -2.7
5,193,579 + BT3987 0.45 -1.3
5,193,613 - BT3987 0.47 -1.6
5,193,635 + BT3987 0.49 -1.6
5,193,671 - BT3987 0.51 -0.5
5,193,686 + BT3987 0.52 +0.3
5,193,687 - BT3987 0.52 +0.5
5,193,836 + BT3987 0.63 -2.3
5,193,841 + BT3987 0.63 -0.9
5,193,842 - BT3987 0.63 +1.0
5,193,851 + BT3987 0.64 -1.1
5,193,864 + BT3987 0.65 -0.2

Or see this region's nucleotide sequence