Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2926

Experiment: PEG (Day 1) - Cage3;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PEG (Day 1) - Cage3;Mouse1
3,675,619	+				-1.5
3,675,620	-				+0.6
3,675,630	+				-0.2
3,675,631	-				+0.2
3,675,694	+				-0.0
3,675,694	+				-2.6
3,675,696	+				-1.6
3,675,706	+				-0.4
3,675,706	+				-1.7
3,675,707	-				-1.9
3,675,707	-				-0.8
3,675,725	-				+1.9
3,675,763	-				+0.3
3,675,766	+				-0.4
3,675,812	-				-2.6
3,675,839	-				-0.4
3,675,897	-		BT2925	0.15	-1.7
3,675,897	-		BT2925	0.15	-0.7
3,675,922	+		BT2925	0.19	-1.6
3,675,943	-		BT2925	0.23	-1.5
3,675,945	+		BT2925	0.23	-1.4
3,675,945	+		BT2925	0.23	+0.8
3,675,945	+		BT2925	0.23	-1.1
3,675,946	-		BT2925	0.23	-0.1
3,675,946	-		BT2925	0.23	+0.1
3,675,946	-		BT2925	0.23	-2.2
3,675,948	-		BT2925	0.24	-1.2
3,675,948	-		BT2925	0.24	+0.4
3,675,948	-		BT2925	0.24	-3.9
3,675,961	+		BT2925	0.26	-0.9
3,676,010	-		BT2925	0.34	-1.7
3,676,010	-		BT2925	0.34	-0.7
3,676,027	+		BT2925	0.37	-1.5
3,676,035	-		BT2925	0.38	-2.4
3,676,100	-		BT2925	0.49	-1.2
3,676,100	-		BT2925	0.49	+0.5
3,676,104	+		BT2925	0.49	-2.5
3,676,104	+		BT2925	0.49	-2.9
3,676,105	-		BT2925	0.50	+1.6
3,676,110	+		BT2925	0.50	-0.8
3,676,120	+		BT2925	0.52	-1.5
3,676,120	+		BT2925	0.52	-0.3
3,676,234	+		BT2925	0.71	-0.8
3,676,244	+		BT2925	0.73	-0.9
3,676,244	+		BT2925	0.73	+0.6
3,676,244	+		BT2925	0.73	-0.5
3,676,282	+		BT2925	0.79	-1.1
3,676,283	-		BT2925	0.79	-2.1
3,676,295	-		BT2925	0.81	-0.9
3,676,324	+		BT2925	0.86	+0.6
3,676,356	+				-1.2
3,676,357	-				-0.9
3,676,383	+				-0.4
3,676,412	+				-0.8
3,676,413	-				-0.6
3,676,422	+				-0.4
3,676,423	-				-0.4
3,676,457	-				+0.4
3,676,461	+				+0.2
3,676,464	-				-4.5
3,676,464	-				-2.1
3,676,471	+				-0.4
3,676,477	+				-0.9
3,676,484	-				-0.4
3,676,486	-				-1.8
3,676,487	+				-1.3
3,676,503	-				+1.7
3,676,511	+				-2.4
3,676,526	-				-2.4
3,676,543	-				-0.4
3,676,544	-				-1.4
3,676,556	+				-1.8
3,676,556	+				+0.6
3,676,556	+				-0.5
3,676,579	+				-0.9
3,676,581	+				+0.1
3,676,581	+				+0.1
3,676,637	-				-1.7
3,676,648	+				+0.2
3,676,649	-				-0.4
3,676,683	+				-0.0
3,676,684	-				+0.6
3,676,684	-				-1.4
3,676,685	+				-1.7
3,676,685	+				-1.8
3,676,686	-				-2.1
3,676,686	-				+0.8
3,676,686	-				-0.1
3,676,692	+				-0.4
3,676,695	-				-0.9
3,676,696	+				-1.1
3,676,727	-				-0.7
3,676,740	+		BT2926	0.11	-0.9
3,676,740	+		BT2926	0.11	-1.9
3,676,747	+		BT2926	0.11	-0.7
3,676,777	+		BT2926	0.14	-1.9
3,676,777	+		BT2926	0.14	-1.4
3,676,777	+		BT2926	0.14	-3.6
3,676,777	+		BT2926	0.14	-0.5
3,676,778	-		BT2926	0.14	-1.8
3,676,795	+		BT2926	0.16	-1.8
3,676,798	+		BT2926	0.16	-2.4
3,676,799	-		BT2926	0.16	-1.5
3,676,801	+		BT2926	0.16	-2.9
3,676,802	-		BT2926	0.16	-1.8
3,676,831	+		BT2926	0.19	-0.4
3,676,842	+		BT2926	0.20	+0.2
3,676,857	+		BT2926	0.21	-0.5
3,676,873	+		BT2926	0.23	+0.1
3,676,874	-				-0.9
3,676,885	+		BT2926	0.24	-1.1
3,676,912	-		BT2926	0.26	-0.4
3,676,912	-		BT2926	0.26	-1.2
3,676,944	+		BT2926	0.29	-0.9
3,676,984	+		BT2926	0.33	-0.9
3,676,985	-		BT2926	0.33	-0.9
3,676,994	+		BT2926	0.34	+0.1
3,676,995	-		BT2926	0.34	-2.2
3,676,995	-		BT2926	0.34	-1.3
3,677,039	-		BT2926	0.38	-0.7
3,677,039	-		BT2926	0.38	-2.9
3,677,044	+		BT2926	0.38	+0.4
3,677,044	+		BT2926	0.38	-1.1
3,677,052	-		BT2926	0.39	-0.6
3,677,095	+		BT2926	0.43	-0.9
3,677,096	-		BT2926	0.43	-1.4
3,677,108	-		BT2926	0.44	+0.3
3,677,108	-		BT2926	0.44	-1.7
3,677,108	-		BT2926	0.44	-1.4
3,677,108	-		BT2926	0.44	-0.1
3,677,108	-		BT2926	0.44	-0.7
3,677,123	-		BT2926	0.45	+0.1
3,677,171	+		BT2926	0.49	-1.3
3,677,171	+		BT2926	0.49	-0.3
3,677,171	+		BT2926	0.49	-2.1
3,677,221	+		BT2926	0.54	-2.9
3,677,227	-		BT2926	0.54	-0.9
3,677,231	+		BT2926	0.55	-1.9
3,677,231	+		BT2926	0.55	-2.8
3,677,231	+		BT2926	0.55	-0.6
3,677,266	-		BT2926	0.58	-0.9
3,677,306	+		BT2926	0.61	-0.7
3,677,307	-		BT2926	0.61	-0.7
3,677,310	+		BT2926	0.62	-1.2
3,677,310	+		BT2926	0.62	-0.7
3,677,310	+		BT2926	0.62	-0.7
3,677,311	-		BT2926	0.62	-2.4
3,677,312	+		BT2926	0.62	-2.3
3,677,350	+		BT2926	0.65	-1.5
3,677,350	+		BT2926	0.65	+1.0
3,677,351	-		BT2926	0.65	+0.6
3,677,351	-		BT2926	0.65	-1.4
3,677,366	+		BT2926	0.67	+0.8
3,677,373	-		BT2926	0.67	-2.4
3,677,434	-		BT2926	0.73	-0.9
3,677,437	+		BT2926	0.73	-3.1
3,677,444	-		BT2926	0.74	-1.4
3,677,444	-		BT2926	0.74	-1.9
3,677,445	+		BT2926	0.74	+0.1
3,677,472	-		BT2926	0.76	-0.9
3,677,476	+		BT2926	0.77	-2.2
3,677,533	+		BT2926	0.82	-2.7
3,677,533	+		BT2926	0.82	-0.6
3,677,534	-		BT2926	0.82	-1.9
3,677,537	-		BT2926	0.82	-0.1
3,677,537	-		BT2926	0.82	-1.4
3,677,538	+		BT2926	0.82	-1.7
3,677,539	-		BT2926	0.82	-1.5
3,677,540	+		BT2926	0.82	+0.8
3,677,540	+		BT2926	0.82	-1.4
3,677,540	+		BT2926	0.82	-0.8
3,677,541	-		BT2926	0.82	+0.3
3,677,541	-		BT2926	0.82	+0.2
3,677,541	-		BT2926	0.82	-0.7
3,677,642	+				+1.1
3,677,645	-				-0.7
3,677,693	+				-1.4
3,677,694	-				-0.7
3,677,694	-				-0.4
3,677,702	+				+3.0
3,677,703	-				-0.7
3,677,703	-				+0.3
3,677,706	+				-3.6
3,677,706	+				-1.9
3,677,707	-				-1.5
3,677,708	+				-2.9
3,677,709	-				-0.9
3,677,759	-				-3.1
3,677,796	+				-0.8
3,677,826	-				-1.8
3,677,826	-				+1.6
3,677,830	-				-1.2
3,677,832	+				-2.9
3,677,838	+				-0.7
3,677,839	-				-0.7
3,677,839	-				-2.4
3,677,839	-				-0.7
3,677,846	+				-3.2
3,677,849	+				-0.9
3,677,853	+				-0.7
3,677,863	+				-1.7
3,677,886	+				-0.7
3,677,919	-				-0.4
3,677,938	+				-1.1
3,677,938	+				-2.6
3,677,938	+				-0.8
3,677,939	-				+0.3
3,677,939	-				-1.8
3,677,939	-				-0.1
3,677,949	+				-1.0
3,677,950	-				+0.9
3,677,963	-				-1.1
3,677,979	+				-2.6
3,677,990	+				+1.1
3,677,991	-				+0.1
3,677,994	+				-0.4
3,677,995	-				+0.3
3,678,006	+				-0.1
3,678,006	+				+0.3
3,678,016	-				+0.4
3,678,019	-				-0.8
3,678,028	+				-0.9
3,678,029	-				+0.7
3,678,033	+				-0.4
3,678,033	+				-0.7
3,678,054	+				-1.3
3,678,055	-				-0.0
3,678,056	+				-1.5
3,678,056	+				-1.9
3,678,088	-		BT2927	0.11	+0.4
3,678,115	-		BT2927	0.12	-1.0
3,678,123	+		BT2927	0.12	-0.9
3,678,123	+		BT2927	0.12	-0.7
3,678,124	-		BT2927	0.12	-2.7
3,678,125	+		BT2927	0.12	-0.9
3,678,147	-		BT2927	0.13	-0.1
3,678,147	-		BT2927	0.13	-0.7
3,678,154	-		BT2927	0.13	-0.4
3,678,164	+		BT2927	0.13	-0.9
3,678,210	+		BT2927	0.15	+0.4
3,678,217	-		BT2927	0.15	-1.5
3,678,217	-		BT2927	0.15	-1.2
3,678,290	+		BT2927	0.17	-1.0
3,678,290	+		BT2927	0.17	-0.7
3,678,301	+		BT2927	0.17	-2.2
3,678,309	+		BT2927	0.18	-2.4
3,678,309	+		BT2927	0.18	-1.8
3,678,318	+		BT2927	0.18	-2.3
3,678,318	+		BT2927	0.18	+0.6
3,678,356	+		BT2927	0.19	-2.5
3,678,386	-		BT2927	0.20	-1.6
3,678,388	+		BT2927	0.20	-1.5
3,678,403	-		BT2927	0.21	-1.2
3,678,407	+		BT2927	0.21	-0.2
3,678,413	+		BT2927	0.21	+0.3
3,678,413	+		BT2927	0.21	-0.5
3,678,413	+		BT2927	0.21	-1.4
3,678,414	-		BT2927	0.21	-0.2
3,678,482	+		BT2927	0.23	+0.6
3,678,483	-		BT2927	0.23	+1.6
3,678,498	-		BT2927	0.24	+0.4
3,678,504	-		BT2927	0.24	+0.6
3,678,549	+		BT2927	0.25	+0.1
3,678,549	+		BT2927	0.25	-1.1
3,678,549	+		BT2927	0.25	-1.1
3,678,550	-		BT2927	0.25	-0.5
3,678,551	+		BT2927	0.25	+0.1
3,678,552	-		BT2927	0.25	-0.8
3,678,552	-		BT2927	0.25	+1.6
3,678,564	+		BT2927	0.26	-2.2
3,678,564	+		BT2927	0.26	-3.3
3,678,565	-		BT2927	0.26	+0.6
3,678,565	-		BT2927	0.26	-1.2
3,678,606	-		BT2927	0.27	-1.2
3,678,676	-		BT2927	0.29	-0.1
3,678,706	-		BT2927	0.30	-2.8
3,678,710	+		BT2927	0.30	+0.6
3,678,711	-				+0.1
3,678,711	-		BT2927	0.30	-1.2