Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0372

Experiment: PEG (Day 1) - Cage3;Mouse1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0371 and BT0372 are separated by 52 nucleotidesBT0372 and BT0373 are separated by 228 nucleotides BT0371: BT0371 - glucose/galactose transporter (NCBI ptt file), at 456,639 to 457,949 BT0371 BT0372: BT0372 - aldose 1-epimerase precursor (NCBI ptt file), at 458,002 to 459,099 BT0372 BT0373: BT0373 - mannose-6-phosphate isomerase (NCBI ptt file), at 459,328 to 460,299 BT0373 Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1at 457.981 kb on - strandat 458.025 kb on - strandat 458.025 kb on - strandat 458.043 kb on - strandat 458.060 kb on - strandat 458.219 kb on - strand, within BT0372at 458.219 kb on - strand, within BT0372at 458.297 kb on - strand, within BT0372at 458.467 kb on - strand, within BT0372at 458.467 kb on - strand, within BT0372at 458.476 kb on - strand, within BT0372at 459.280 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PEG (Day 1) - Cage3;Mouse1
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457,981 - -1.1
458,025 - -1.1
458,025 - +1.3
458,043 - -0.7
458,060 - -0.5
458,219 - BT0372 0.20 -0.5
458,219 - BT0372 0.20 -2.3
458,297 - BT0372 0.27 +0.5
458,467 - BT0372 0.42 -2.1
458,467 - BT0372 0.42 -2.0
458,476 - BT0372 0.43 -2.6
459,280 + +0.2

Or see this region's nucleotide sequence