Experiment: PEG (Day 1) - Cage3;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0367 and BT0368 are separated by 25 nucleotides BT0368 and BT0369 are separated by 1 nucleotides
BT0367: BT0367 - putative endo-arabinase (NCBI ptt file), at 450,805 to 452,346
BT0367
BT0368: BT0368 - alpha-L-arabinofuranosidase A precursor (NCBI ptt file), at 452,372 to 454,354
BT0368
BT0369: BT0369 - endo-1,4-beta-xylanase D precursor (NCBI ptt file), at 454,356 to 455,321
BT0369
Position (kb) 452
453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 451.380 kb on + strand, within BT0367 at 451.432 kb on - strand, within BT0367 at 451.553 kb on - strand, within BT0367 at 451.553 kb on - strand, within BT0367 at 451.583 kb on + strand, within BT0367 at 451.613 kb on - strand, within BT0367 at 451.649 kb on - strand, within BT0367 at 451.650 kb on + strand, within BT0367 at 451.881 kb on - strand, within BT0367 at 451.884 kb on + strand, within BT0367 at 451.887 kb on - strand, within BT0367 at 451.940 kb on - strand, within BT0367 at 452.020 kb on + strand, within BT0367 at 452.158 kb on - strand, within BT0367 at 452.354 kb on + strand at 452.409 kb on + strand at 452.495 kb on + strand at 452.658 kb on - strand, within BT0368 at 452.789 kb on - strand, within BT0368 at 452.789 kb on - strand, within BT0368 at 453.192 kb on - strand, within BT0368 at 453.200 kb on - strand, within BT0368 at 453.483 kb on - strand, within BT0368 at 453.623 kb on + strand, within BT0368 at 453.624 kb on - strand, within BT0368 at 453.721 kb on + strand, within BT0368 at 453.722 kb on - strand, within BT0368 at 453.722 kb on - strand, within BT0368 at 453.722 kb on - strand, within BT0368 at 453.725 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.862 kb on + strand, within BT0368 at 453.862 kb on + strand, within BT0368 at 453.863 kb on - strand, within BT0368 at 453.958 kb on - strand, within BT0368 at 453.962 kb on + strand, within BT0368 at 453.965 kb on + strand, within BT0368 at 453.966 kb on - strand, within BT0368 at 454.079 kb on + strand, within BT0368 at 454.118 kb on - strand, within BT0368 at 454.121 kb on - strand, within BT0368 at 454.144 kb on - strand, within BT0368 at 454.235 kb on - strand at 454.337 kb on - strand at 454.512 kb on + strand, within BT0369 at 454.512 kb on + strand, within BT0369 at 454.513 kb on - strand, within BT0369 at 454.579 kb on + strand, within BT0369 at 454.702 kb on - strand, within BT0369 at 454.707 kb on + strand, within BT0369 at 454.754 kb on - strand, within BT0369 at 454.896 kb on + strand, within BT0369 at 454.903 kb on - strand, within BT0369 at 454.914 kb on + strand, within BT0369 at 454.923 kb on + strand, within BT0369 at 455.015 kb on + strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.043 kb on + strand, within BT0369 at 455.043 kb on + strand, within BT0369 at 455.068 kb on + strand, within BT0369 at 455.088 kb on - strand, within BT0369 at 455.188 kb on - strand, within BT0369 at 455.262 kb on + strand at 455.263 kb on - strand at 455.266 kb on - strand at 455.331 kb on + strand at 455.339 kb on + strand at 455.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 1) - Cage3;Mouse1 remove 451,380 + BT0367 0.37 +1.1 451,432 - BT0367 0.41 -2.3 451,553 - BT0367 0.49 -1.3 451,553 - BT0367 0.49 -1.5 451,583 + BT0367 0.50 -0.5 451,613 - BT0367 0.52 -2.3 451,649 - BT0367 0.55 -2.2 451,650 + BT0367 0.55 +0.5 451,881 - BT0367 0.70 -3.3 451,884 + BT0367 0.70 +1.1 451,887 - BT0367 0.70 -0.5 451,940 - BT0367 0.74 -1.1 452,020 + BT0367 0.79 +2.1 452,158 - BT0367 0.88 -2.4 452,354 + -1.7 452,409 + -0.4 452,495 + -0.1 452,658 - BT0368 0.14 -1.8 452,789 - BT0368 0.21 -0.3 452,789 - BT0368 0.21 -0.5 453,192 - BT0368 0.41 -0.8 453,200 - BT0368 0.42 -1.5 453,483 - BT0368 0.56 -0.1 453,623 + BT0368 0.63 -0.8 453,624 - BT0368 0.63 -0.8 453,721 + BT0368 0.68 -0.1 453,722 - BT0368 0.68 -1.5 453,722 - BT0368 0.68 -1.3 453,722 - BT0368 0.68 -0.4 453,725 + BT0368 0.68 +0.5 453,858 + BT0368 0.75 -2.5 453,858 + BT0368 0.75 +0.5 453,858 + BT0368 0.75 -2.3 453,858 + BT0368 0.75 -0.5 453,862 + BT0368 0.75 -0.5 453,862 + BT0368 0.75 -0.3 453,863 - BT0368 0.75 +1.1 453,958 - BT0368 0.80 -2.6 453,962 + BT0368 0.80 -0.8 453,965 + BT0368 0.80 -0.7 453,966 - BT0368 0.80 -0.8 454,079 + BT0368 0.86 -2.6 454,118 - BT0368 0.88 -1.1 454,121 - BT0368 0.88 -3.2 454,144 - BT0368 0.89 -1.0 454,235 - -1.7 454,337 - -1.2 454,512 + BT0369 0.16 -0.1 454,512 + BT0369 0.16 -2.0 454,513 - BT0369 0.16 -0.8 454,579 + BT0369 0.23 +1.0 454,702 - BT0369 0.36 -1.0 454,707 + BT0369 0.36 +0.1 454,754 - BT0369 0.41 +1.8 454,896 + BT0369 0.56 -1.3 454,903 - BT0369 0.57 -0.5 454,914 + BT0369 0.58 -2.5 454,923 + BT0369 0.59 -0.6 455,015 + BT0369 0.68 -1.5 455,016 - BT0369 0.68 +1.5 455,016 - +0.5 455,016 - BT0369 0.68 +0.1 455,016 - BT0369 0.68 +0.5 455,016 - BT0369 0.68 +0.7 455,043 + BT0369 0.71 +0.3 455,043 + BT0369 0.71 -2.0 455,068 + BT0369 0.74 -0.1 455,088 - BT0369 0.76 -0.7 455,188 - BT0369 0.86 -1.8 455,262 + -2.5 455,263 - -1.5 455,266 - -1.1 455,331 + -1.3 455,339 + -1.4 455,348 + -0.4
Or see this region's nucleotide sequence