Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16625

Experiment: Glycine betaine (C)(N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine betaine (C)(N); with MOPS
3,766,639	+		PFLU_RS16620	0.28	+0.9
3,766,737	+		PFLU_RS16620	0.35	+0.5
3,766,737	+		PFLU_RS16620	0.35	+0.2
3,766,737	+		PFLU_RS16620	0.35	+0.2
3,766,737	+		PFLU_RS16620	0.35	-0.8
3,766,738	-		PFLU_RS16620	0.35	+0.1
3,766,738	-		PFLU_RS16620	0.35	+0.2
3,766,738	-		PFLU_RS16620	0.35	-0.1
3,766,868	+		PFLU_RS16620	0.44	+0.1
3,766,868	+		PFLU_RS16620	0.44	-0.5
3,766,868	+		PFLU_RS16620	0.44	+0.6
3,766,868	+		PFLU_RS16620	0.44	+0.5
3,766,868	+		PFLU_RS16620	0.44	-0.1
3,766,868	+		PFLU_RS16620	0.44	-0.6
3,766,868	+		PFLU_RS16620	0.44	+1.7
3,766,868	+		PFLU_RS16620	0.44	+0.6
3,766,868	+		PFLU_RS16620	0.44	-1.3
3,766,869	-		PFLU_RS16620	0.44	-1.7
3,766,869	-		PFLU_RS16620	0.44	+0.5
3,766,869	-		PFLU_RS16620	0.44	-1.1
3,766,869	-		PFLU_RS16620	0.44	+0.7
3,766,869	-		PFLU_RS16620	0.44	-1.0
3,766,869	-		PFLU_RS16620	0.44	+1.0
3,766,869	-		PFLU_RS16620	0.44	+0.7
3,766,869	-		PFLU_RS16620	0.44	-1.5
3,766,869	-		PFLU_RS16620	0.44	+2.4
3,766,869	-		PFLU_RS16620	0.44	+0.4
3,766,903	+		PFLU_RS16620	0.47	+1.6
3,767,008	+		PFLU_RS16620	0.54	-1.1
3,767,009	-		PFLU_RS16620	0.55	+0.5
3,767,009	-		PFLU_RS16620	0.55	-1.1
3,767,051	+		PFLU_RS16620	0.58	+0.5
3,767,052	-		PFLU_RS16620	0.58	-1.0
3,767,052	-		PFLU_RS16620	0.58	+1.0
3,767,052	-		PFLU_RS16620	0.58	+0.5
3,767,179	+		PFLU_RS16620	0.67	+1.9
3,767,180	-		PFLU_RS16620	0.67	-0.7
3,767,180	-		PFLU_RS16620	0.67	+0.8
3,767,194	+		PFLU_RS16620	0.68	+0.5
3,767,195	-		PFLU_RS16620	0.68	-1.1
3,767,195	-		PFLU_RS16620	0.68	-1.5
3,767,195	-		PFLU_RS16620	0.68	-0.7
3,767,233	+		PFLU_RS16620	0.71	-0.9
3,767,233	+		PFLU_RS16620	0.71	-1.5
3,767,233	+		PFLU_RS16620	0.71	-0.2
3,767,233	+		PFLU_RS16620	0.71	-0.8
3,767,233	+		PFLU_RS16620	0.71	+0.1
3,767,233	+		PFLU_RS16620	0.71	-2.0
3,767,233	+		PFLU_RS16620	0.71	+1.3
3,767,233	+		PFLU_RS16620	0.71	+0.7
3,767,234	-		PFLU_RS16620	0.71	+0.3
3,767,234	-		PFLU_RS16620	0.71	+0.6
3,767,234	-		PFLU_RS16620	0.71	+0.4
3,767,234	-		PFLU_RS16620	0.71	-1.3
3,767,234	-		PFLU_RS16620	0.71	+0.7
3,767,234	-		PFLU_RS16620	0.71	+0.6
3,767,243	-		PFLU_RS16620	0.72	-1.8
3,767,482	-		PFLU_RS16620	0.89	+0.4
3,767,556	+				-0.9
3,767,615	+				-1.3
3,767,616	-				+0.5
3,767,616	-				-0.1
3,767,724	+				+1.3
3,767,724	+				-0.4
3,767,724	+				+0.3
3,767,725	-				+0.9
3,767,739	+				-0.6
3,767,739	+				+1.1
3,767,740	-				-0.1
3,767,778	+		PFLU_RS16625	0.13	+3.1
3,767,938	+		PFLU_RS16625	0.26	+0.4
3,767,938	+		PFLU_RS16625	0.26	+0.0
3,767,938	+		PFLU_RS16625	0.26	-2.3
3,767,939	-		PFLU_RS16625	0.26	+0.1
3,767,939	-		PFLU_RS16625	0.26	-1.5
3,767,939	-		PFLU_RS16625	0.26	+1.0
3,767,939	-		PFLU_RS16625	0.26	-0.5
3,767,939	-		PFLU_RS16625	0.26	+0.3
3,767,939	-		PFLU_RS16625	0.26	-1.1
3,767,940	+		PFLU_RS16625	0.26	+0.7
3,767,941	-		PFLU_RS16625	0.27	-0.8
3,767,941	-		PFLU_RS16625	0.27	+2.1
3,768,227	+		PFLU_RS16625	0.51	+0.8
3,768,227	+		PFLU_RS16625	0.51	-0.1
3,768,227	+		PFLU_RS16625	0.51	-1.5
3,768,228	-		PFLU_RS16625	0.51	-0.1
3,768,228	-		PFLU_RS16625	0.51	+0.6
3,768,228	-		PFLU_RS16625	0.51	+0.8
3,768,228	-		PFLU_RS16625	0.51	+1.1
3,768,237	+		PFLU_RS16625	0.52	+0.1
3,768,237	+		PFLU_RS16625	0.52	+1.0
3,768,237	+		PFLU_RS16625	0.52	+0.2
3,768,237	+		PFLU_RS16625	0.52	-0.5
3,768,238	-		PFLU_RS16625	0.52	-0.4
3,768,238	-		PFLU_RS16625	0.52	-2.1
3,768,238	-		PFLU_RS16625	0.52	-1.1
3,768,238	-		PFLU_RS16625	0.52	+0.6
3,768,471	+		PFLU_RS16625	0.72	-1.3
3,768,471	+		PFLU_RS16625	0.72	+0.1
3,768,471	+		PFLU_RS16625	0.72	-0.9
3,768,471	+		PFLU_RS16625	0.72	+2.4
3,768,474	+		PFLU_RS16625	0.72	-0.2
3,768,795	+				+1.6
3,768,795	+				-2.5
3,768,795	+				-0.7
3,768,796	-				-0.1
3,768,796	-				+0.5
3,768,796	-				-0.7
3,768,796	-				-2.5
3,768,796	-				+1.8
3,768,818	+				-2.6
3,768,854	-				-1.1
3,768,854	-				-0.1
3,768,854	-				-0.5
3,768,923	-				-0.2
3,768,941	-				+0.9
3,769,036	+				+1.0
3,769,036	+				+0.9
3,769,036	+				-0.5
3,769,081	+				-0.2
3,769,081	+				-0.7
3,769,081	+				-0.1
3,769,081	+				-0.9
3,769,229	-				-0.6
3,769,289	-		PFLU_RS16630	0.11	-1.2
3,769,289	-		PFLU_RS16630	0.11	-0.0
3,769,321	+		PFLU_RS16630	0.13	+3.3
3,769,322	-		PFLU_RS16630	0.13	+1.0
3,769,322	-		PFLU_RS16630	0.13	+2.0
3,769,322	-		PFLU_RS16630	0.13	-0.1
3,769,322	-		PFLU_RS16630	0.13	-1.1
3,769,322	-		PFLU_RS16630	0.13	+0.9
3,769,322	-		PFLU_RS16630	0.13	-0.5
3,769,322	-		PFLU_RS16630	0.13	-0.7
3,769,360	+		PFLU_RS16630	0.15	+0.8
3,769,360	+		PFLU_RS16630	0.15	+0.3
3,769,360	+		PFLU_RS16630	0.15	-1.7
3,769,360	+		PFLU_RS16630	0.15	-0.4
3,769,360	+		PFLU_RS16630	0.15	-1.6
3,769,361	-		PFLU_RS16630	0.15	+0.9
3,769,361	-		PFLU_RS16630	0.15	-1.0
3,769,361	-		PFLU_RS16630	0.15	-2.0
3,769,468	+		PFLU_RS16630	0.20	-0.3
3,769,468	+		PFLU_RS16630	0.20	+0.1
3,769,468	+		PFLU_RS16630	0.20	+1.4
3,769,469	-		PFLU_RS16630	0.20	-1.1
3,769,488	+		PFLU_RS16630	0.20	+2.8
3,769,606	+		PFLU_RS16630	0.26	+0.9
3,769,618	+		PFLU_RS16630	0.26	+1.3
3,769,663	+		PFLU_RS16630	0.28	+0.5
3,769,663	+		PFLU_RS16630	0.28	+4.1
3,769,664	-		PFLU_RS16630	0.28	+1.6
3,769,664	-		PFLU_RS16630	0.28	-0.4
3,769,675	+		PFLU_RS16630	0.29	-0.9
3,769,675	+		PFLU_RS16630	0.29	+1.0
3,769,675	+		PFLU_RS16630	0.29	-1.3
3,769,675	+		PFLU_RS16630	0.29	+0.6
3,769,676	-		PFLU_RS16630	0.29	-0.4
3,769,676	-		PFLU_RS16630	0.29	+1.2
3,769,676	-		PFLU_RS16630	0.29	+0.6
3,769,676	-		PFLU_RS16630	0.29	+0.5
3,769,676	-		PFLU_RS16630	0.29	+0.1
3,769,676	-		PFLU_RS16630	0.29	-0.8
3,769,676	-		PFLU_RS16630	0.29	-1.7
3,769,685	+		PFLU_RS16630	0.29	-2.2
3,769,686	-		PFLU_RS16630	0.29	-0.3
3,769,777	+		PFLU_RS16630	0.34	+0.5