Experiment: Glucose (C) and Glycine betaine (N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02055 and PFLU_RS02060 are separated by 120 nucleotides PFLU_RS02060 and PFLU_RS02065 are separated by 124 nucleotides
PFLU_RS02055: PFLU_RS02055 - uroporphyrinogen decarboxylase, at 464,786 to 465,853
_RS02055
PFLU_RS02060: PFLU_RS02060 - MFS transporter, at 465,974 to 467,248
_RS02060
PFLU_RS02065: PFLU_RS02065 - LysR family transcriptional regulator, at 467,373 to 468,266
_RS02065
Position (kb) 465
466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 465.851 kb on + strand at 465.851 kb on + strand at 465.852 kb on - strand at 465.852 kb on - strand at 465.958 kb on + strand at 465.958 kb on + strand at 465.958 kb on + strand at 465.958 kb on + strand at 466.117 kb on + strand, within PFLU_RS02060 at 466.131 kb on + strand, within PFLU_RS02060 at 466.131 kb on + strand, within PFLU_RS02060 at 466.131 kb on + strand, within PFLU_RS02060 at 466.132 kb on - strand, within PFLU_RS02060 at 466.132 kb on - strand, within PFLU_RS02060 at 466.134 kb on + strand, within PFLU_RS02060 at 466.134 kb on + strand, within PFLU_RS02060 at 466.135 kb on - strand, within PFLU_RS02060 at 466.146 kb on + strand, within PFLU_RS02060 at 466.146 kb on + strand, within PFLU_RS02060 at 466.147 kb on - strand, within PFLU_RS02060 at 466.147 kb on - strand, within PFLU_RS02060 at 466.291 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.377 kb on + strand, within PFLU_RS02060 at 466.378 kb on - strand, within PFLU_RS02060 at 466.378 kb on - strand, within PFLU_RS02060 at 466.378 kb on - strand, within PFLU_RS02060 at 466.378 kb on - strand, within PFLU_RS02060 at 466.381 kb on + strand, within PFLU_RS02060 at 466.382 kb on - strand, within PFLU_RS02060 at 466.392 kb on + strand, within PFLU_RS02060 at 466.392 kb on + strand, within PFLU_RS02060 at 466.392 kb on + strand, within PFLU_RS02060 at 466.392 kb on + strand, within PFLU_RS02060 at 466.392 kb on + strand, within PFLU_RS02060 at 466.392 kb on + strand, within PFLU_RS02060 at 466.435 kb on - strand, within PFLU_RS02060 at 466.435 kb on - strand, within PFLU_RS02060 at 466.464 kb on + strand, within PFLU_RS02060 at 466.464 kb on + strand, within PFLU_RS02060 at 466.464 kb on + strand, within PFLU_RS02060 at 466.464 kb on + strand, within PFLU_RS02060 at 466.464 kb on + strand, within PFLU_RS02060 at 466.464 kb on + strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.465 kb on - strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.749 kb on + strand, within PFLU_RS02060 at 466.750 kb on - strand, within PFLU_RS02060 at 466.750 kb on - strand, within PFLU_RS02060 at 466.750 kb on - strand, within PFLU_RS02060 at 466.800 kb on + strand, within PFLU_RS02060 at 466.801 kb on - strand, within PFLU_RS02060 at 466.801 kb on - strand, within PFLU_RS02060 at 466.801 kb on - strand, within PFLU_RS02060 at 466.801 kb on - strand, within PFLU_RS02060 at 466.801 kb on - strand, within PFLU_RS02060 at 466.801 kb on - strand, within PFLU_RS02060 at 466.801 kb on - strand, within PFLU_RS02060 at 466.859 kb on + strand, within PFLU_RS02060 at 466.859 kb on + strand, within PFLU_RS02060 at 466.860 kb on - strand, within PFLU_RS02060 at 466.860 kb on - strand, within PFLU_RS02060 at 466.860 kb on - strand, within PFLU_RS02060 at 466.942 kb on + strand, within PFLU_RS02060 at 466.942 kb on + strand, within PFLU_RS02060 at 466.942 kb on + strand, within PFLU_RS02060 at 466.943 kb on - strand, within PFLU_RS02060 at 466.943 kb on - strand, within PFLU_RS02060 at 467.085 kb on + strand, within PFLU_RS02060 at 467.085 kb on + strand, within PFLU_RS02060 at 467.085 kb on + strand, within PFLU_RS02060 at 467.086 kb on - strand, within PFLU_RS02060 at 467.086 kb on - strand, within PFLU_RS02060 at 467.166 kb on + strand at 467.166 kb on + strand at 467.166 kb on + strand at 467.166 kb on + strand at 467.166 kb on + strand at 467.166 kb on + strand at 467.166 kb on + strand at 467.166 kb on + strand at 467.166 kb on + strand at 467.167 kb on - strand at 467.167 kb on - strand at 467.167 kb on - strand at 467.167 kb on - strand at 467.167 kb on - strand at 467.167 kb on - strand at 467.299 kb on + strand at 467.299 kb on + strand at 467.299 kb on + strand at 467.299 kb on + strand at 467.299 kb on + strand at 467.299 kb on + strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.300 kb on - strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.301 kb on + strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.302 kb on - strand at 467.325 kb on + strand at 467.326 kb on - strand at 467.327 kb on + strand at 467.327 kb on + strand at 467.328 kb on - strand at 467.394 kb on + strand at 467.394 kb on + strand at 467.479 kb on + strand, within PFLU_RS02065 at 467.479 kb on + strand, within PFLU_RS02065 at 467.480 kb on - strand, within PFLU_RS02065 at 467.480 kb on - strand, within PFLU_RS02065 at 467.480 kb on - strand, within PFLU_RS02065 at 467.480 kb on - strand, within PFLU_RS02065 at 467.480 kb on - strand, within PFLU_RS02065 at 467.542 kb on + strand, within PFLU_RS02065 at 467.542 kb on + strand, within PFLU_RS02065 at 467.542 kb on + strand, within PFLU_RS02065 at 467.542 kb on + strand, within PFLU_RS02065 at 467.543 kb on - strand, within PFLU_RS02065 at 467.543 kb on - strand, within PFLU_RS02065 at 467.543 kb on - strand, within PFLU_RS02065 at 467.543 kb on - strand, within PFLU_RS02065 at 467.543 kb on - strand, within PFLU_RS02065 at 467.682 kb on - strand, within PFLU_RS02065 at 467.878 kb on + strand, within PFLU_RS02065 at 467.902 kb on + strand, within PFLU_RS02065 at 467.902 kb on + strand, within PFLU_RS02065 at 467.902 kb on + strand, within PFLU_RS02065 at 467.989 kb on - strand, within PFLU_RS02065 at 468.001 kb on + strand, within PFLU_RS02065 at 468.001 kb on + strand, within PFLU_RS02065 at 468.001 kb on + strand, within PFLU_RS02065 at 468.001 kb on + strand, within PFLU_RS02065 at 468.001 kb on + strand, within PFLU_RS02065 at 468.001 kb on + strand, within PFLU_RS02065 at 468.002 kb on - strand, within PFLU_RS02065 at 468.002 kb on - strand, within PFLU_RS02065 at 468.002 kb on - strand, within PFLU_RS02065 at 468.118 kb on - strand, within PFLU_RS02065 at 468.147 kb on + strand, within PFLU_RS02065 at 468.147 kb on + strand, within PFLU_RS02065 at 468.148 kb on - strand, within PFLU_RS02065 at 468.148 kb on - strand, within PFLU_RS02065 at 468.148 kb on - strand, within PFLU_RS02065
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Glycine betaine (N); with MOPS; with chloride remove 465,851 + -0.2 465,851 + +0.5 465,852 - -1.1 465,852 - +0.3 465,958 + -0.3 465,958 + +1.7 465,958 + -0.9 465,958 + +0.3 466,117 + PFLU_RS02060 0.11 -0.3 466,131 + PFLU_RS02060 0.12 +0.0 466,131 + PFLU_RS02060 0.12 +0.1 466,131 + PFLU_RS02060 0.12 -2.1 466,132 - PFLU_RS02060 0.12 -1.3 466,132 - PFLU_RS02060 0.12 -0.7 466,134 + PFLU_RS02060 0.13 -1.7 466,134 + PFLU_RS02060 0.13 +1.3 466,135 - PFLU_RS02060 0.13 -1.3 466,146 + PFLU_RS02060 0.13 -1.4 466,146 + PFLU_RS02060 0.13 +0.8 466,147 - PFLU_RS02060 0.14 +0.8 466,147 - PFLU_RS02060 0.14 -0.4 466,291 + PFLU_RS02060 0.25 -1.2 466,377 + PFLU_RS02060 0.32 +0.1 466,377 + PFLU_RS02060 0.32 +0.5 466,377 + PFLU_RS02060 0.32 +1.2 466,377 + PFLU_RS02060 0.32 -0.3 466,377 + PFLU_RS02060 0.32 -0.2 466,377 + PFLU_RS02060 0.32 +1.5 466,377 + PFLU_RS02060 0.32 +2.3 466,377 + PFLU_RS02060 0.32 +0.8 466,377 + PFLU_RS02060 0.32 +0.7 466,377 + PFLU_RS02060 0.32 +0.8 466,378 - PFLU_RS02060 0.32 +1.0 466,378 - PFLU_RS02060 0.32 +0.4 466,378 - PFLU_RS02060 0.32 +0.8 466,378 - PFLU_RS02060 0.32 +0.9 466,381 + PFLU_RS02060 0.32 +0.0 466,382 - PFLU_RS02060 0.32 +0.7 466,392 + PFLU_RS02060 0.33 +1.6 466,392 + PFLU_RS02060 0.33 +0.4 466,392 + PFLU_RS02060 0.33 -0.1 466,392 + PFLU_RS02060 0.33 +0.2 466,392 + PFLU_RS02060 0.33 -0.9 466,392 + PFLU_RS02060 0.33 +1.9 466,435 - PFLU_RS02060 0.36 -0.3 466,435 - PFLU_RS02060 0.36 -0.1 466,464 + PFLU_RS02060 0.38 -0.6 466,464 + PFLU_RS02060 0.38 +0.6 466,464 + PFLU_RS02060 0.38 +0.8 466,464 + PFLU_RS02060 0.38 +0.6 466,464 + PFLU_RS02060 0.38 -1.1 466,464 + PFLU_RS02060 0.38 +0.7 466,465 - PFLU_RS02060 0.39 -0.3 466,465 - PFLU_RS02060 0.39 -0.8 466,465 - PFLU_RS02060 0.39 -2.0 466,465 - PFLU_RS02060 0.39 +0.3 466,465 - PFLU_RS02060 0.39 +1.3 466,465 - PFLU_RS02060 0.39 -0.4 466,465 - PFLU_RS02060 0.39 +0.0 466,465 - PFLU_RS02060 0.39 +0.4 466,465 - PFLU_RS02060 0.39 +1.0 466,465 - PFLU_RS02060 0.39 -0.2 466,465 - PFLU_RS02060 0.39 -0.9 466,465 - PFLU_RS02060 0.39 +0.7 466,465 - PFLU_RS02060 0.39 -1.9 466,749 + PFLU_RS02060 0.61 -0.8 466,749 + PFLU_RS02060 0.61 +0.4 466,749 + PFLU_RS02060 0.61 -2.1 466,749 + PFLU_RS02060 0.61 +1.6 466,749 + PFLU_RS02060 0.61 -2.1 466,749 + PFLU_RS02060 0.61 +0.8 466,749 + PFLU_RS02060 0.61 +1.0 466,749 + PFLU_RS02060 0.61 -0.2 466,749 + PFLU_RS02060 0.61 +1.0 466,749 + PFLU_RS02060 0.61 +1.5 466,749 + PFLU_RS02060 0.61 -1.7 466,750 - PFLU_RS02060 0.61 +0.3 466,750 - PFLU_RS02060 0.61 +0.2 466,750 - PFLU_RS02060 0.61 +0.5 466,800 + PFLU_RS02060 0.65 +2.8 466,801 - PFLU_RS02060 0.65 -2.7 466,801 - PFLU_RS02060 0.65 -0.0 466,801 - PFLU_RS02060 0.65 +0.2 466,801 - PFLU_RS02060 0.65 +0.7 466,801 - PFLU_RS02060 0.65 +0.2 466,801 - PFLU_RS02060 0.65 +1.0 466,801 - PFLU_RS02060 0.65 -1.1 466,859 + PFLU_RS02060 0.69 +0.4 466,859 + PFLU_RS02060 0.69 +0.0 466,860 - PFLU_RS02060 0.69 +0.6 466,860 - PFLU_RS02060 0.69 +0.2 466,860 - PFLU_RS02060 0.69 -1.7 466,942 + PFLU_RS02060 0.76 -2.3 466,942 + PFLU_RS02060 0.76 -0.0 466,942 + PFLU_RS02060 0.76 +0.8 466,943 - PFLU_RS02060 0.76 +1.8 466,943 - PFLU_RS02060 0.76 +0.3 467,085 + PFLU_RS02060 0.87 -0.2 467,085 + PFLU_RS02060 0.87 -0.7 467,085 + PFLU_RS02060 0.87 +0.4 467,086 - PFLU_RS02060 0.87 -0.1 467,086 - PFLU_RS02060 0.87 -0.2 467,166 + -1.1 467,166 + -2.4 467,166 + -0.6 467,166 + -0.5 467,166 + -0.3 467,166 + +0.1 467,166 + -0.1 467,166 + -1.1 467,166 + -0.2 467,167 - -0.3 467,167 - -0.3 467,167 - +0.4 467,167 - +0.5 467,167 - +1.4 467,167 - +1.3 467,299 + -2.4 467,299 + -0.3 467,299 + +0.4 467,299 + +0.4 467,299 + +0.5 467,299 + -1.0 467,300 - -0.0 467,300 - -1.9 467,300 - +0.6 467,300 - -0.5 467,300 - -0.1 467,300 - -2.4 467,300 - -0.2 467,300 - +0.4 467,300 - +0.3 467,300 - +1.3 467,300 - +1.9 467,300 - -1.3 467,301 + -1.0 467,301 + +1.0 467,301 + +0.5 467,301 + +1.1 467,301 + +0.3 467,301 + +0.8 467,301 + -1.6 467,301 + -0.5 467,301 + -0.6 467,301 + +0.2 467,301 + -0.3 467,301 + -0.1 467,301 + +0.6 467,301 + +1.3 467,301 + +0.3 467,301 + -2.8 467,301 + +0.8 467,301 + +1.3 467,301 + +1.5 467,301 + -2.0 467,301 + -0.0 467,301 + +0.8 467,301 + +1.3 467,301 + -0.4 467,302 - -0.5 467,302 - +1.5 467,302 - +0.3 467,302 - +0.8 467,302 - +0.4 467,302 - +1.2 467,302 - -0.2 467,302 - +0.6 467,302 - -0.2 467,302 - -0.3 467,302 - -2.6 467,302 - +0.6 467,302 - +1.4 467,302 - +1.8 467,302 - -0.3 467,302 - -0.1 467,302 - -2.5 467,302 - -0.0 467,302 - +1.6 467,302 - -1.2 467,302 - +2.0 467,302 - +0.1 467,302 - +1.6 467,325 + -0.6 467,326 - +0.3 467,327 + +1.6 467,327 + +1.6 467,328 - +0.2 467,394 + -0.4 467,394 + +0.2 467,479 + PFLU_RS02065 0.12 -2.3 467,479 + PFLU_RS02065 0.12 -1.4 467,480 - PFLU_RS02065 0.12 -0.4 467,480 - PFLU_RS02065 0.12 +0.7 467,480 - PFLU_RS02065 0.12 -0.5 467,480 - PFLU_RS02065 0.12 -0.0 467,480 - PFLU_RS02065 0.12 -1.1 467,542 + PFLU_RS02065 0.19 +1.4 467,542 + PFLU_RS02065 0.19 -0.5 467,542 + PFLU_RS02065 0.19 +0.0 467,542 + PFLU_RS02065 0.19 +2.0 467,543 - PFLU_RS02065 0.19 -0.2 467,543 - PFLU_RS02065 0.19 +1.0 467,543 - PFLU_RS02065 0.19 -0.8 467,543 - PFLU_RS02065 0.19 -1.1 467,543 - PFLU_RS02065 0.19 -0.6 467,682 - PFLU_RS02065 0.35 -0.3 467,878 + PFLU_RS02065 0.56 -1.1 467,902 + PFLU_RS02065 0.59 +0.1 467,902 + PFLU_RS02065 0.59 +0.1 467,902 + PFLU_RS02065 0.59 -0.9 467,989 - PFLU_RS02065 0.69 +2.3 468,001 + PFLU_RS02065 0.70 -0.0 468,001 + PFLU_RS02065 0.70 +0.2 468,001 + PFLU_RS02065 0.70 +0.4 468,001 + PFLU_RS02065 0.70 +0.1 468,001 + PFLU_RS02065 0.70 -1.3 468,001 + PFLU_RS02065 0.70 -1.7 468,002 - PFLU_RS02065 0.70 +0.1 468,002 - PFLU_RS02065 0.70 +0.6 468,002 - PFLU_RS02065 0.70 -1.3 468,118 - PFLU_RS02065 0.83 +0.3 468,147 + PFLU_RS02065 0.87 +0.6 468,147 + PFLU_RS02065 0.87 -0.4 468,148 - PFLU_RS02065 0.87 -0.8 468,148 - PFLU_RS02065 0.87 +0.5 468,148 - PFLU_RS02065 0.87 +0.7
Or see this region's nucleotide sequence