Experiment: Post-colonization (Day 14) - Cage2;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4501 and BT4502 are separated by 100 nucleotides BT4502 and BT4503 are separated by 106 nucleotides BT4503 and BT4504 are separated by 215 nucleotides BT4504 and BT4505 overlap by 6 nucleotides
BT4501: BT4501 - ribosomal large subunit pseudouridine synthase A (NCBI ptt file), at 5,916,372 to 5,918,021
BT4501
BT4502: BT4502 - conserved hypothetical protein (NCBI ptt file), at 5,918,122 to 5,918,652
BT4502
BT4503: BT4503 - conserved hypothetical protein (NCBI ptt file), at 5,918,759 to 5,919,223
BT4503
BT4504: BT4504 - conserved hypothetical protein (NCBI ptt file), at 5,919,439 to 5,920,113
BT4504
BT4505: BT4505 - hypothetical protein (NCBI ptt file), at 5,920,108 to 5,920,650
BT4505
Position (kb) 5918
5919
5920 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5917.950 kb on - strand at 5917.950 kb on - strand at 5917.952 kb on - strand at 5917.963 kb on + strand at 5917.964 kb on - strand at 5918.150 kb on + strand at 5918.189 kb on - strand, within BT4502 at 5918.216 kb on - strand, within BT4502 at 5918.243 kb on - strand, within BT4502 at 5918.353 kb on + strand, within BT4502 at 5918.385 kb on + strand, within BT4502 at 5918.432 kb on - strand, within BT4502 at 5918.433 kb on + strand, within BT4502 at 5918.477 kb on + strand, within BT4502 at 5918.502 kb on + strand, within BT4502 at 5918.692 kb on + strand at 5918.692 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.734 kb on - strand at 5918.774 kb on - strand at 5918.901 kb on + strand, within BT4503 at 5918.923 kb on - strand, within BT4503 at 5918.923 kb on - strand, within BT4503 at 5918.942 kb on - strand, within BT4503 at 5919.016 kb on - strand, within BT4503 at 5919.217 kb on + strand at 5919.245 kb on - strand at 5919.281 kb on + strand at 5919.391 kb on - strand at 5919.396 kb on - strand at 5919.402 kb on - strand at 5919.446 kb on + strand at 5919.447 kb on - strand at 5919.585 kb on - strand, within BT4504 at 5919.612 kb on - strand, within BT4504 at 5919.627 kb on - strand, within BT4504 at 5919.801 kb on - strand, within BT4504 at 5919.801 kb on - strand, within BT4504 at 5919.801 kb on - strand, within BT4504 at 5919.859 kb on - strand, within BT4504 at 5919.888 kb on + strand, within BT4504 at 5919.936 kb on + strand, within BT4504 at 5919.936 kb on + strand, within BT4504 at 5919.936 kb on + strand, within BT4504 at 5919.937 kb on - strand, within BT4504 at 5919.937 kb on - strand, within BT4504 at 5919.953 kb on + strand, within BT4504 at 5920.061 kb on + strand at 5920.062 kb on - strand at 5920.092 kb on - strand at 5920.107 kb on - strand at 5920.109 kb on + strand at 5920.218 kb on + strand, within BT4505 at 5920.218 kb on + strand, within BT4505 at 5920.218 kb on + strand, within BT4505 at 5920.219 kb on - strand, within BT4505 at 5920.219 kb on - strand, within BT4505 at 5920.219 kb on - strand, within BT4505
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage2;Mouse2 remove 5,917,950 - +1.4 5,917,950 - +0.7 5,917,952 - -0.4 5,917,963 + +0.8 5,917,964 - +1.1 5,918,150 + -0.9 5,918,189 - BT4502 0.13 -0.0 5,918,216 - BT4502 0.18 +0.4 5,918,243 - BT4502 0.23 -0.5 5,918,353 + BT4502 0.44 +2.2 5,918,385 + BT4502 0.50 -1.6 5,918,432 - BT4502 0.58 -1.3 5,918,433 + BT4502 0.59 +0.1 5,918,477 + BT4502 0.67 -0.2 5,918,502 + BT4502 0.72 -0.2 5,918,692 + -0.8 5,918,692 + +1.1 5,918,733 + -0.9 5,918,733 + -0.4 5,918,733 + -0.3 5,918,733 + +0.5 5,918,733 + -0.3 5,918,734 - -1.0 5,918,774 - -2.4 5,918,901 + BT4503 0.31 -0.9 5,918,923 - BT4503 0.35 -2.0 5,918,923 - BT4503 0.35 -1.4 5,918,942 - BT4503 0.39 -1.6 5,919,016 - BT4503 0.55 -1.2 5,919,217 + -0.2 5,919,245 - +1.0 5,919,281 + -0.3 5,919,391 - -1.7 5,919,396 - -1.4 5,919,402 - +0.9 5,919,446 + -0.3 5,919,447 - -1.3 5,919,585 - BT4504 0.22 -0.3 5,919,612 - BT4504 0.26 -1.4 5,919,627 - BT4504 0.28 -0.2 5,919,801 - BT4504 0.54 +0.1 5,919,801 - BT4504 0.54 +0.1 5,919,801 - BT4504 0.54 -0.6 5,919,859 - BT4504 0.62 -0.1 5,919,888 + BT4504 0.67 +0.0 5,919,936 + BT4504 0.74 -0.5 5,919,936 + BT4504 0.74 +0.4 5,919,936 + BT4504 0.74 -0.4 5,919,937 - BT4504 0.74 -1.2 5,919,937 - BT4504 0.74 -1.6 5,919,953 + BT4504 0.76 -0.9 5,920,061 + -0.1 5,920,062 - -1.2 5,920,092 - -0.1 5,920,107 - +0.0 5,920,109 + -1.5 5,920,218 + BT4505 0.20 -3.4 5,920,218 + BT4505 0.20 -1.9 5,920,218 + BT4505 0.20 -1.3 5,920,219 - BT4505 0.20 +0.5 5,920,219 - BT4505 0.20 -1.1 5,920,219 - BT4505 0.20 -1.6
Or see this region's nucleotide sequence