Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2899

Experiment: Post-colonization (Day 14) - Cage2;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 14) - Cage2;Mouse2
3,626,235	+				-0.8
3,626,285	+				-0.2
3,626,286	-				-1.2
3,626,295	-				-0.3
3,626,304	-				-0.1
3,626,316	-				-1.5
3,626,316	-				-2.6
3,626,410	-		BT2898	0.18	-1.1
3,626,410	-		BT2898	0.18	-1.2
3,626,455	+		BT2898	0.23	-1.4
3,626,456	-		BT2898	0.23	-1.7
3,626,459	+		BT2898	0.23	-1.0
3,626,460	-		BT2898	0.23	-2.1
3,626,483	+		BT2898	0.26	-1.2
3,626,495	-		BT2898	0.27	-0.7
3,626,500	-		BT2898	0.28	+0.7
3,626,514	-		BT2898	0.29	+0.5
3,626,549	-		BT2898	0.33	-0.8
3,626,553	-		BT2898	0.33	-1.8
3,626,572	+		BT2898	0.35	-0.7
3,626,651	+		BT2898	0.43	-0.0
3,626,651	+		BT2898	0.43	+2.4
3,626,719	+		BT2898	0.50	-1.4
3,626,725	+		BT2898	0.50	-0.5
3,626,759	+		BT2898	0.54	-1.0
3,626,759	+		BT2898	0.54	+0.4
3,626,759	+		BT2898	0.54	-0.2
3,626,763	+		BT2898	0.54	-0.7
3,626,783	+		BT2898	0.56	-1.5
3,626,784	-		BT2898	0.56	-0.5
3,626,843	+		BT2898	0.62	-0.6
3,626,843	+		BT2898	0.62	-1.3
3,626,844	-		BT2898	0.62	-2.9
3,626,844	-		BT2898	0.62	+1.0
3,626,861	-		BT2898	0.64	-0.8
3,626,891	+		BT2898	0.67	-0.2
3,626,893	+		BT2898	0.67	-0.8
3,626,924	+		BT2898	0.71	-1.6
3,626,929	+		BT2898	0.71	+1.2
3,626,929	+		BT2898	0.71	-1.0
3,627,032	-		BT2898	0.82	-0.8
3,627,040	+		BT2898	0.82	-1.6
3,627,144	-				-0.6
3,627,144	-				-0.0
3,627,149	+				-2.1
3,627,192	-				-1.7
3,627,212	+				+0.9
3,627,212	+				+0.4
3,627,214	+				-2.0
3,627,214	+				-3.0
3,627,215	-				-0.9
3,627,217	-				-0.0
3,627,217	-				-1.5
3,627,226	+				+0.0
3,627,227	-				-1.3
3,627,273	+				-1.4
3,627,314	+				-2.2
3,627,360	-				-1.2
3,627,407	+				-1.4
3,627,426	+				-0.6
3,627,427	-				-0.6
3,627,437	+				-0.6
3,627,482	+		BT2899	0.12	-1.9
3,627,482	+		BT2899	0.12	-1.6
3,627,483	-		BT2899	0.12	-1.6
3,627,484	+		BT2899	0.12	-1.0
3,627,484	+		BT2899	0.12	-2.4
3,627,484	+		BT2899	0.12	-1.4
3,627,491	+		BT2899	0.13	+0.1
3,627,527	+		BT2899	0.14	-2.9
3,627,553	-		BT2899	0.16	-3.8
3,627,588	+		BT2899	0.17	-4.8
3,627,588	+		BT2899	0.17	-3.4
3,627,588	+		BT2899	0.17	-3.7
3,627,588	+		BT2899	0.17	-1.2
3,627,591	-		BT2899	0.18	-0.6
3,627,621	+		BT2899	0.19	-3.5
3,627,622	-		BT2899	0.19	-1.2
3,627,634	+		BT2899	0.20	-2.2
3,627,638	-		BT2899	0.20	+0.8
3,627,655	+		BT2899	0.21	-2.3
3,627,690	-		BT2899	0.22	-2.0
3,627,690	-		BT2899	0.22	-2.1
3,627,721	+		BT2899	0.24	-2.7
3,627,724	+		BT2899	0.24	-0.2
3,627,724	+		BT2899	0.24	-1.6
3,627,783	-		BT2899	0.27	-4.8
3,627,852	-		BT2899	0.30	-1.0
3,627,879	-		BT2899	0.32	-2.4
3,627,880	+		BT2899	0.32	-1.4
3,627,881	-		BT2899	0.32	-3.0
3,627,914	+		BT2899	0.33	-3.2
3,627,918	-		BT2899	0.34	-2.5
3,627,930	-		BT2899	0.34	-2.3
3,627,996	-		BT2899	0.37	-1.6
3,628,088	-		BT2899	0.42	-1.0
3,628,211	+		BT2899	0.48	-0.9
3,628,212	-		BT2899	0.48	-4.3
3,628,347	+		BT2899	0.55	-1.4
3,628,360	+		BT2899	0.55	-1.1
3,628,377	-		BT2899	0.56	-0.8
3,628,442	+		BT2899	0.59	-3.2
3,628,463	-		BT2899	0.60	-0.9
3,628,463	-		BT2899	0.60	-2.4
3,628,466	+		BT2899	0.61	-1.2
3,628,466	+		BT2899	0.61	-2.4
3,628,467	-		BT2899	0.61	-4.3
3,628,467	-		BT2899	0.61	-2.4
3,628,467	-		BT2899	0.61	-0.6
3,628,477	+		BT2899	0.61	-1.6
3,628,528	+		BT2899	0.64	-1.4
3,628,532	+		BT2899	0.64	-1.9
3,628,615	+		BT2899	0.68	-1.8
3,628,658	+		BT2899	0.70	-3.6
3,628,659	-		BT2899	0.70	-1.0
3,628,662	+		BT2899	0.70	-1.4
3,628,662	+		BT2899	0.70	-1.4
3,628,663	-		BT2899	0.70	-3.0
3,628,808	-		BT2899	0.77	-4.5
3,628,812	-		BT2899	0.78	-0.6
3,628,826	+		BT2899	0.78	+0.4
3,628,827	-		BT2899	0.78	-1.0
3,628,830	+		BT2899	0.78	-3.2
3,628,830	+		BT2899	0.78	-1.8
3,628,830	+		BT2899	0.78	-1.6
3,628,836	-		BT2899	0.79	-0.2
3,628,857	-		BT2899	0.80	-1.8
3,628,897	-		BT2899	0.82	-3.1
3,628,927	+		BT2899	0.83	-0.5
3,629,006	+		BT2899	0.87	-2.5
3,629,006	+		BT2899	0.87	-2.1
3,629,007	-		BT2899	0.87	-2.7
3,629,007	-		BT2899	0.87	-4.2
3,629,010	+		BT2899	0.87	-2.6
3,629,016	+		BT2899	0.88	-2.5
3,629,017	-		BT2899	0.88	-2.4
3,629,092	+				+0.4
3,629,171	+				-2.8
3,629,172	-				-3.9
3,629,204	+				-3.2
3,629,212	-				-0.6
3,629,234	+				-0.6
3,629,250	+				-0.2
3,629,260	-				-3.9
3,629,268	-				-2.9
3,629,270	-				-3.4
3,629,333	+				-0.7
3,629,334	-				-0.1
3,629,467	-				-1.6
3,629,483	+				+0.0
3,629,487	+				+0.0
3,629,553	+				-0.9
3,629,615	-				+0.8
3,629,680	-		BT2900	0.16	+0.4
3,629,690	-		BT2900	0.17	-3.2
3,629,751	+		BT2900	0.23	-0.5
3,629,763	+		BT2900	0.24	+1.4
3,629,764	-		BT2900	0.24	-0.5
3,629,779	-		BT2900	0.26	-1.0
3,629,786	+		BT2900	0.26	+1.4
3,629,786	+		BT2900	0.26	-0.5
3,629,786	+		BT2900	0.26	-0.1
3,629,786	+		BT2900	0.26	+0.4
3,629,787	-		BT2900	0.27	+0.4
3,629,829	-		BT2900	0.31	+1.4
3,629,877	-		BT2900	0.36	-0.1
3,629,880	-		BT2900	0.36	-0.6
3,629,880	-		BT2900	0.36	-0.4
3,629,903	+		BT2900	0.38	-0.2
3,629,904	-		BT2900	0.39	-1.4
3,629,904	-		BT2900	0.39	+0.9
3,629,978	-		BT2900	0.46	+0.4
3,629,984	-		BT2900	0.47	+1.4
3,629,991	-		BT2900	0.47	-0.4
3,629,992	+		BT2900	0.48	-2.9
3,629,992	+		BT2900	0.48	-0.4
3,629,993	-		BT2900	0.48	-0.2
3,630,087	+		BT2900	0.57	+0.4
3,630,087	+		BT2900	0.57	-0.9
3,630,107	-		BT2900	0.59	-1.2
3,630,188	+		BT2900	0.68	-1.6
3,630,189	-		BT2900	0.68	-1.8
3,630,197	+		BT2900	0.69	+0.0
3,630,197	+		BT2900	0.69	+0.1