Experiment: Post-colonization (Day 14) - Cage2;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0727 and BT0728 are separated by 349 nucleotides BT0728 and BT0729 are separated by 33 nucleotides
BT0727: BT0727 - conserved hypothetical protein (NCBI ptt file), at 900,485 to 901,666
BT0727
BT0728: BT0728 - transcriptional regulator (NCBI ptt file), at 902,016 to 902,915
BT0728
BT0729: BT0729 - transcriptional regulator (NCBI ptt file), at 902,949 to 903,851
BT0729
Position (kb) 902
903 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 901.021 kb on - strand, within BT0727 at 901.042 kb on + strand, within BT0727 at 901.043 kb on - strand, within BT0727 at 901.091 kb on + strand, within BT0727 at 901.136 kb on + strand, within BT0727 at 901.285 kb on - strand, within BT0727 at 901.330 kb on + strand, within BT0727 at 901.333 kb on - strand, within BT0727 at 901.364 kb on - strand, within BT0727 at 901.423 kb on + strand, within BT0727 at 901.500 kb on + strand, within BT0727 at 901.536 kb on + strand, within BT0727 at 901.537 kb on - strand, within BT0727 at 901.559 kb on - strand at 901.647 kb on + strand at 901.682 kb on - strand at 901.691 kb on + strand at 901.701 kb on + strand at 901.742 kb on + strand at 901.806 kb on + strand at 901.809 kb on - strand at 901.831 kb on - strand at 902.130 kb on - strand, within BT0728 at 902.136 kb on - strand, within BT0728 at 902.140 kb on - strand, within BT0728 at 902.140 kb on - strand, within BT0728 at 902.154 kb on - strand, within BT0728 at 902.154 kb on - strand, within BT0728 at 902.209 kb on + strand, within BT0728 at 902.251 kb on - strand, within BT0728 at 902.303 kb on + strand, within BT0728 at 902.413 kb on - strand, within BT0728 at 902.445 kb on - strand, within BT0728 at 902.447 kb on - strand, within BT0728 at 902.447 kb on - strand, within BT0728 at 902.499 kb on + strand, within BT0728 at 902.500 kb on - strand, within BT0728 at 902.716 kb on + strand, within BT0728 at 902.877 kb on + strand at 902.897 kb on + strand at 902.897 kb on + strand at 902.906 kb on + strand at 902.963 kb on + strand at 902.963 kb on + strand at 902.979 kb on - strand at 903.115 kb on + strand, within BT0729 at 903.345 kb on + strand, within BT0729 at 903.345 kb on + strand, within BT0729 at 903.482 kb on - strand, within BT0729 at 903.549 kb on + strand, within BT0729 at 903.653 kb on - strand, within BT0729 at 903.709 kb on + strand, within BT0729 at 903.726 kb on - strand, within BT0729 at 903.815 kb on - strand at 903.891 kb on + strand at 903.892 kb on - strand at 903.892 kb on - strand at 903.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage2;Mouse2 remove 901,021 - BT0727 0.45 -0.9 901,042 + BT0727 0.47 +0.6 901,043 - BT0727 0.47 +1.3 901,091 + BT0727 0.51 -2.7 901,136 + BT0727 0.55 +0.5 901,285 - BT0727 0.68 -1.0 901,330 + BT0727 0.71 -2.3 901,333 - BT0727 0.72 -0.8 901,364 - BT0727 0.74 -0.7 901,423 + BT0727 0.79 -1.3 901,500 + BT0727 0.86 -0.4 901,536 + BT0727 0.89 -0.1 901,537 - BT0727 0.89 -0.3 901,559 - -2.0 901,647 + +1.1 901,682 - -0.3 901,691 + +0.1 901,701 + -0.9 901,742 + -0.5 901,806 + +0.4 901,809 - -0.3 901,831 - -1.0 902,130 - BT0728 0.13 -1.5 902,136 - BT0728 0.13 -1.5 902,140 - BT0728 0.14 +1.3 902,140 - BT0728 0.14 -3.4 902,154 - BT0728 0.15 +0.3 902,154 - BT0728 0.15 -0.7 902,209 + BT0728 0.21 -2.0 902,251 - BT0728 0.26 -3.7 902,303 + BT0728 0.32 -1.2 902,413 - BT0728 0.44 -0.7 902,445 - BT0728 0.48 -2.0 902,447 - BT0728 0.48 -0.3 902,447 - BT0728 0.48 -1.3 902,499 + BT0728 0.54 -0.7 902,500 - BT0728 0.54 -4.0 902,716 + BT0728 0.78 -1.0 902,877 + -3.2 902,897 + -1.3 902,897 + -1.9 902,906 + -1.5 902,963 + -1.5 902,963 + -0.5 902,979 - +2.9 903,115 + BT0729 0.18 -0.4 903,345 + BT0729 0.44 -0.6 903,345 + BT0729 0.44 -0.3 903,482 - BT0729 0.59 -0.4 903,549 + BT0729 0.66 -0.0 903,653 - BT0729 0.78 +1.3 903,709 + BT0729 0.84 +3.6 903,726 - BT0729 0.86 -0.7 903,815 - -1.5 903,891 + -1.5 903,892 - +0.1 903,892 - -0.7 903,897 + +0.8
Or see this region's nucleotide sequence