Experiment: Post-colonization (Day 14) - Cage2;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0619 and BT0620 are separated by 26 nucleotides BT0620 and BT0621 are separated by 17 nucleotides BT0621 and BT0622 are separated by 22 nucleotides BT0622 and BT0623 are separated by 258 nucleotides
BT0619: BT0619 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file), at 764,439 to 765,431
BT0619
BT0620: BT0620 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfG (NCBI ptt file), at 765,458 to 766,141
BT0620
BT0621: BT0621 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file), at 766,159 to 766,743
BT0621
BT0622: BT0622 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfA (NCBI ptt file), at 766,766 to 767,338
BT0622
BT0623: BT0623 - putative UDP-glucose 4-epimerase (NCBI ptt file), at 767,597 to 768,631
BT0623
Position (kb) 766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 765.451 kb on - strand at 765.457 kb on + strand at 766.042 kb on + strand, within BT0620 at 766.124 kb on - strand at 766.136 kb on - strand at 766.164 kb on + strand at 766.291 kb on - strand, within BT0621 at 766.291 kb on - strand, within BT0621 at 766.423 kb on + strand, within BT0621 at 766.424 kb on - strand, within BT0621 at 766.444 kb on - strand, within BT0621 at 766.537 kb on - strand, within BT0621 at 766.598 kb on + strand, within BT0621 at 766.620 kb on + strand, within BT0621 at 766.626 kb on - strand, within BT0621 at 766.700 kb on + strand at 766.723 kb on - strand at 766.774 kb on + strand at 766.782 kb on + strand at 766.978 kb on - strand, within BT0622 at 767.060 kb on + strand, within BT0622 at 767.166 kb on + strand, within BT0622 at 767.383 kb on + strand at 767.393 kb on + strand at 767.425 kb on + strand at 767.451 kb on + strand at 767.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage2;Mouse2 remove 765,451 - -2.6 765,457 + -1.1 766,042 + BT0620 0.85 +0.7 766,124 - -2.5 766,136 - -1.3 766,164 + -0.3 766,291 - BT0621 0.23 -1.0 766,291 - BT0621 0.23 -1.5 766,423 + BT0621 0.45 -0.9 766,424 - BT0621 0.45 +0.3 766,444 - BT0621 0.49 -2.2 766,537 - BT0621 0.65 -1.3 766,598 + BT0621 0.75 -1.3 766,620 + BT0621 0.79 -1.5 766,626 - BT0621 0.80 -1.3 766,700 + -1.5 766,723 - -1.3 766,774 + +0.5 766,782 + -2.8 766,978 - BT0622 0.37 +0.3 767,060 + BT0622 0.51 +0.3 767,166 + BT0622 0.70 -1.3 767,383 + +1.0 767,393 + -1.7 767,425 + -0.6 767,451 + -0.0 767,482 + -0.3
Or see this region's nucleotide sequence