Experiment: Post-colonization (Day 14) - Cage2;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0555 and BT0556 are separated by 27 nucleotides BT0556 and BT0557 are separated by 9 nucleotides
BT0555: BT0555 - amidophosphoribosyltransferase (NCBI ptt file), at 687,163 to 689,046
BT0555
BT0556: BT0556 - carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file), at 689,074 to 690,240
BT0556
BT0557: BT0557 - carbamyl phosphate synthetase (NCBI ptt file), at 690,250 to 693,477
BT0557
Position (kb) 689
690
691 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 688.149 kb on - strand, within BT0555 at 688.213 kb on - strand, within BT0555 at 688.236 kb on - strand, within BT0555 at 688.236 kb on - strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.477 kb on + strand, within BT0555 at 688.537 kb on - strand, within BT0555 at 688.555 kb on - strand, within BT0555 at 688.616 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 689.036 kb on - strand at 689.044 kb on + strand at 689.045 kb on - strand at 689.159 kb on + strand at 689.235 kb on + strand, within BT0556 at 689.235 kb on + strand, within BT0556 at 689.490 kb on + strand, within BT0556 at 689.566 kb on + strand, within BT0556 at 689.595 kb on - strand, within BT0556 at 689.623 kb on + strand, within BT0556 at 689.646 kb on + strand, within BT0556 at 689.872 kb on - strand, within BT0556 at 689.975 kb on - strand, within BT0556 at 690.436 kb on + strand at 690.457 kb on + strand at 690.464 kb on + strand at 690.501 kb on + strand at 690.501 kb on + strand at 690.501 kb on + strand at 690.502 kb on - strand at 690.553 kb on - strand at 690.582 kb on - strand, within BT0557 at 690.594 kb on + strand, within BT0557 at 690.603 kb on - strand, within BT0557 at 690.613 kb on - strand, within BT0557 at 690.978 kb on + strand, within BT0557 at 690.978 kb on + strand, within BT0557 at 690.979 kb on - strand, within BT0557 at 691.023 kb on + strand, within BT0557 at 691.048 kb on - strand, within BT0557 at 691.085 kb on + strand, within BT0557
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage2;Mouse2 remove 688,149 - BT0555 0.52 -2.3 688,213 - BT0555 0.56 -3.3 688,236 - BT0555 0.57 -3.1 688,236 - BT0555 0.57 -2.8 688,475 + BT0555 0.70 -3.1 688,475 + BT0555 0.70 -3.4 688,475 + BT0555 0.70 -2.7 688,477 + BT0555 0.70 -1.3 688,537 - BT0555 0.73 -3.1 688,555 - BT0555 0.74 -3.1 688,616 + BT0555 0.77 -1.3 688,816 + BT0555 0.88 -0.8 688,816 + BT0555 0.88 -2.2 688,816 + BT0555 0.88 -3.7 688,816 + BT0555 0.88 -3.7 689,036 - -2.3 689,044 + -0.7 689,045 - -4.9 689,159 + -0.8 689,235 + BT0556 0.14 -1.1 689,235 + BT0556 0.14 +0.2 689,490 + BT0556 0.36 -3.3 689,566 + BT0556 0.42 -3.7 689,595 - BT0556 0.45 -1.8 689,623 + BT0556 0.47 -3.1 689,646 + BT0556 0.49 -1.3 689,872 - BT0556 0.68 -1.3 689,975 - BT0556 0.77 -1.3 690,436 + -1.9 690,457 + -1.1 690,464 + -1.3 690,501 + -0.3 690,501 + -3.7 690,501 + -3.5 690,502 - -0.3 690,553 - -1.1 690,582 - BT0557 0.10 -4.9 690,594 + BT0557 0.11 -1.6 690,603 - BT0557 0.11 -1.6 690,613 - BT0557 0.11 -1.6 690,978 + BT0557 0.23 -1.1 690,978 + BT0557 0.23 -1.9 690,979 - BT0557 0.23 -0.3 691,023 + BT0557 0.24 -2.8 691,048 - BT0557 0.25 -4.2 691,085 + BT0557 0.26 -1.6
Or see this region's nucleotide sequence